Guide Gene
- Gene ID
- Mapoly0097s0033
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [PTHR10870] CELL CYCLE CHECKPOINT PROTEIN RAD1; [KOG3194] Checkpoint 9-1-1 complex, RAD1 component; [PF02144] Repair protein Rad1/Rec1/Rad17; [GO:0005634] nucleus; [K02830] cell cycle checkpoint protein [EC:3.1.11.2]; [GO:0006281] DNA repair; [3.1.11.2] Exodeoxyribonuclease III.
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0097s0033 [PTHR10870] CELL CYCLE CHECKPOINT PROTEIN RAD1; [KOG3194] Checkpoint 9-1-1 complex, RAD1 component; [PF02144] Repair protein Rad1/Rec1/Rad17; [GO:0005634] nucleus; [K02830] cell cycle checkpoint protein [EC:3.1.11.2]; [GO:0006281] DNA repair; [3.1.11.2] Exodeoxyribonuclease III. 0.00 1.0000 1 Mapoly0001s0197 [K10733] GINS complex subunit 2; [GO:0006260] DNA replication; [PF05916] GINS complex protein; [GO:0005634] nucleus; [KOG4071] Uncharacterized conserved protein; [PTHR12772] DNA REPLICATION COMPLEX GINS PROTEIN PSF2 2.24 0.7911 2 Mapoly0016s0052 [K10752] histone-binding protein RBBP4; [GO:0005515] protein binding; [KOG0264] Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1; [PTHR22850] WD40 REPEAT FAMILY; [PF12265] Histone-binding protein RBBP4 or subunit C of CAF1 complex; [PF00400] WD domain, G-beta repeat 2.45 0.7681 3 Mapoly0014s0217 [GO:0005515] protein binding; [KOG0322] G-protein beta subunit-like protein GNB1L, contains WD repeats; [PTHR19854:SF1] GB DEF: GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN 1 G PROTEIN BETA-S; [PTHR19854] TRANSDUCIN BETA-LIKE 3; [PF00400] WD domain, G-beta repeat 4.24 0.7717 4 Mapoly0118s0024 [PTHR22840] FAMILY NOT NAMED; [GO:0005515] protein binding; [K14406] cleavage stimulation factor subunit 1; [KOG0640] mRNA cleavage stimulating factor complex; subunit 1; [PF00400] WD domain, G-beta repeat 4.58 0.7614 5 Mapoly0007s0061 [KOG1434] Meiotic recombination protein Dmc1; [PTHR22942] RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER; [K10869] RAD51-like protein 1; [PTHR22942:SF15] DNA REPAIR PROTEIN RAD51 HOMOLOG 2, R51H2; [PF08423] Rad51 5.83 0.7412 6 Mapoly0065s0033 [GO:0003723] RNA binding; [3.1.26.5] Ribonuclease P.; [K03538] ribonuclease P protein subunit POP4 [EC:3.1.26.5]; [GO:0000172] ribonuclease MRP complex; [PF01868] Domain of unknown function UPF0086; [PTHR13348] RIBONUCLEASE P; [GO:0006364] rRNA processing; [GO:0008033] tRNA processing; [GO:0030677] ribonuclease P complex; [GO:0006379] mRNA cleavage; [KOG4046] RNase MRP and P, subunit POP4/p29; [GO:0004540] ribonuclease activity 6.32 0.7702 7 Mapoly0117s0010 [PTHR11024] PROTEIN TRANSPORT PROTEIN SEC13-RELATED; [GO:0005515] protein binding; [KOG2445] Nuclear pore complex component (sc Seh1); [PF00400] WD domain, G-beta repeat 6.93 0.7487 8 Mapoly0059s0052 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding 7.21 0.7485 9 Mapoly0113s0020 [GO:0003677] DNA binding; [PTHR12604:SF2] KU P70 DNA HELICASE; [K10884] ATP-dependent DNA helicase 2 subunit 1; [GO:0042162] telomeric DNA binding; [PF03730] Ku70/Ku80 C-terminal arm; [PF02735] Ku70/Ku80 beta-barrel domain; [PF03731] Ku70/Ku80 N-terminal alpha/beta domain; [GO:0043564] Ku70:Ku80 complex; [GO:0005634] nucleus; [GO:0004003] ATP-dependent DNA helicase activity; [GO:0003676] nucleic acid binding; [KOG2327] DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen); [PTHR12604] KU AUTOANTIGEN DNA HELICASE; [GO:0003684] damaged DNA binding; [GO:0006303] double-strand break repair via nonhomologous end joining; [PF02037] SAP domain; [GO:0000723] telomere maintenance 8.37 0.7530 10 Mapoly0014s0064 [PTHR10552] U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A; [K11092] U2 small nuclear ribonucleoprotein A'; [KOG1644] U2-associated snRNP A' protein; [PF14580] Leucine-rich repeat 9.59 0.7815 11 Mapoly0024s0018 [PTHR23147] SERINE/ARGININE RICH SPLICING FACTOR; [KOG4207] Predicted splicing factor, SR protein superfamily; [K12891] splicing factor, arginine/serine-rich 2; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10.58 0.7708 12 Mapoly0002s0230 [GO:0003677] DNA binding; [GO:0000784] nuclear chromosome, telomeric region; [PF02765] Telomeric single stranded DNA binding POT1/CDC13; [GO:0043047] single-stranded telomeric DNA binding; [PTHR14513] PROTECTION OF TELOMERES 1; [KOG4757] Predicted telomere binding protein; [GO:0000723] telomere maintenance 12.85 0.7462 13 Mapoly0123s0035 [PTHR14614] HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN; [PF10294] Putative methyltransferase; [KOG3201] Uncharacterized conserved protein 13.56 0.6878 14 Mapoly0096s0048 [GO:0030915] Smc5-Smc6 complex; [PTHR21330] UNCHARACTERIZED; [GO:0019789] SUMO ligase activity; [PF11789] Zinc-finger of the MIZ type in Nse subunit; [GO:0000724] double-strand break repair via homologous recombination 14.70 0.7282 15 Mapoly0009s0203 - 17.55 0.7506 16 Mapoly0066s0106 [PTHR15588] LSM1; [KOG1784] Small Nuclear ribonucleoprotein splicing factor; [K12627] U6 snRNA-associated Sm-like protein LSm8; [PF01423] LSM domain 18.73 0.7551 17 Mapoly0023s0117 [PTHR10139] DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11A; [PF04152] Mre11 DNA-binding presumed domain; [KOG2310] DNA repair exonuclease MRE11; [GO:0006259] DNA metabolic process; [PF00149] Calcineurin-like phosphoesterase; [GO:0006302] double-strand break repair; [GO:0016787] hydrolase activity; [GO:0030145] manganese ion binding; [GO:0005634] nucleus; [GO:0004527] exonuclease activity; [K10865] double-strand break repair protein MRE11; [GO:0004519] endonuclease activity 20.00 0.7592 18 Mapoly0011s0044 [K03132] transcription initiation factor TFIID subunit 7; [PF04658] TAFII55 protein conserved region; [PTHR12228] TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED; [GO:0005669] transcription factor TFIID complex; [GO:0006367] transcription initiation from RNA polymerase II promoter 21.45 0.7320 19 Mapoly0147s0029 [PTHR21596] RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED; [PF01248] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 23.15 0.6742 20 Mapoly0055s0054 [PTHR13476] UNCHARACTERIZED; [PTHR13476:SF0] SUBFAMILY NOT NAMED; [PF09340] Histone acetyltransferase subunit NuA4; [K11344] chromatin modification-related protein EAF6 23.87 0.7321 21 Mapoly0187s0003 [PTHR22880] FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS; [K06062] histone acetyltransferase [EC:2.3.1.48]; [GO:0005515] protein binding; [PF00439] Bromodomain; [GO:0008080] N-acetyltransferase activity; [PF00583] Acetyltransferase (GNAT) family; [2.3.1.48] Histone acetyltransferase. 25.30 0.7430 22 Mapoly0154s0022 [GO:0003723] RNA binding; [GO:0016787] hydrolase activity; [PTHR23114] FAMILY NOT NAMED; [PF05026] Dcp2, box A domain; [GO:0030145] manganese ion binding; [PTHR23114:SF9] SUBFAMILY NOT NAMED; [3.-.-.-] Hydrolases.; [KOG2839] Diadenosine and diphosphoinositol polyphosphate phosphohydrolase; [PF00293] NUDIX domain; [K12613] mRNA-decapping enzyme subunit 2 [EC:3.-.-.-] 26.27 0.7286 23 Mapoly0054s0011 [PF06220] U1 zinc finger; [K13152] U11/U12 small nuclear ribonucleoprotein 20 kDa protein; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [GO:0008270] zinc ion binding; [KOG3454] U1 snRNP-specific protein C; [PTHR16465] NUCLEASE-RELATED; [GO:0046872] metal ion binding; [PTHR16465:SF0] SUBFAMILY NOT NAMED 28.53 0.7000 24 Mapoly0014s0096 [GO:0005524] ATP binding; [K10755] replication factor C subunit 2/4; [KOG0989] Replication factor C, subunit RFC4; [PTHR11669] REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT; [PF00004] ATPase family associated with various cellular activities (AAA); [PF08542] Replication factor C C-terminal domain 30.30 0.7411 25 Mapoly0052s0123 [PTHR12616] VACUOLAR PROTEIN SORTING VPS41 30.40 0.7319 26 Mapoly0004s0008 - 32.79 0.7239 27 Mapoly0011s0164 [GO:0005524] ATP binding; [PTHR24223:SF5] SUBFAMILY NOT NAMED; [GO:0016021] integral to membrane; [PTHR24223] FAMILY NOT NAMED; [PF00664] ABC transporter transmembrane region; [GO:0016887] ATPase activity; [GO:0006810] transport; [GO:0055085] transmembrane transport; [KOG0054] Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily; [GO:0042626] ATPase activity, coupled to transmembrane movement of substances; [PF00005] ABC transporter 33.27 0.6361 28 Mapoly0003s0234 [PTHR23139] RNA-BINDING PROTEIN; [K13154] U11/U12 small nuclear ribonucleoprotein 31 kDa protein; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [KOG4206] Spliceosomal protein snRNP-U1A/U2B; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37.70 0.7125 29 Mapoly0001s0064 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [GO:0008173] RNA methyltransferase activity; [PTHR12029] RNA METHYLTRANSFERASE; [KOG0838] RNA Methylase, SpoU family; [PF00588] SpoU rRNA Methylase family 37.97 0.7470 30 Mapoly0065s0031 [GO:0042393] histone binding; [PF12165] Domain of unknown function (DUF3594); [GO:0006355] regulation of transcription, DNA-dependent; [PTHR12321] CPG BINDING PROTEIN 42.08 0.6661 31 Mapoly0101s0047 [KOG2084] Predicted histone tail methylase containing SET domain; [GO:0005515] protein binding; [PF00856] SET domain; [K11426] SET and MYND domain-containing protein; [PTHR12197] SET AND MYND DOMAIN CONTAINING; [PF01753] MYND finger 42.57 0.6242 32 Mapoly0101s0017 [KOG1294] Apurinic/apyrimidinic endonuclease and related enzymes; [PTHR22748:SF1] AP ENDONUCLEASE; [GO:0006281] DNA repair; [PF03372] Endonuclease/Exonuclease/phosphatase family; [GO:0004518] nuclease activity; [PTHR22748] AP ENDONUCLEASE 42.97 0.7178 33 Mapoly0214s0009 [KOG3467] Histone H4; [GO:0003677] DNA binding; [PTHR10484] HISTONE H4; [K11254] histone H4; [PF00125] Core histone H2A/H2B/H3/H4 42.99 0.7157 34 Mapoly0052s0093 [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [PTHR10108] METHYLTRANSFERASE; [PF01209] ubiE/COQ5 methyltransferase family; [K06127] ubiquinone biosynthesis methyltransferase [EC:2.1.1.-]; [PTHR10108:SF24] UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHYLTRANSFERASE; [KOG1540] Ubiquinone biosynthesis methyltransferase COQ5 45.28 0.6608 35 Mapoly0099s0020 - 50.11 0.6624 36 Mapoly0059s0054 [GO:0006338] chromatin remodeling; [PTHR10019] SNF5; [GO:0000228] nuclear chromosome; [K11648] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; [PF04855] SNF5 / SMARCB1 / INI1 51.38 0.6855 37 Mapoly0080s0021 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [3.6.4.13] RNA helicase.; [K13117] ATP-dependent RNA helicase DDX35 [EC:3.6.4.13]; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold 51.38 0.6788 38 Mapoly0158s0032 [PTHR13561] DNA REPLICATION REGULATOR DPB11-RELATED; [K10728] topoisomerase (DNA) II binding protein 1; [PF00533] BRCA1 C Terminus (BRCT) domain; [PF12738] twin BRCT domain 51.38 0.7059 39 Mapoly0024s0037 [K13151] snurportin-1; [KOG3132] m3G-cap-specific nuclear import receptor (Snurportin1); [PTHR13403:SF6] SNURPORTIN1 (RNUT1 PROTEIN) (RNA, U TRANSPORTER 1); [PTHR13403] SNURPORTIN1 (RNUT1 PROTEIN) (RNA, U TRANSPORTER 1) 52.23 0.6350 40 Mapoly0075s0044 - 54.80 0.6553 41 Mapoly0052s0057 [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [PTHR22807:SF16] SUN FAMILY PROTEIN-RELATED; [PF01189] NOL1/NOP2/sun family; [KOG2198] tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily 56.32 0.6787 42 Mapoly0109s0054 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PF02229] Transcriptional Coactivator p15 (PC4); [KOG2712] Transcriptional coactivator; [PTHR13215] RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR; [GO:0003713] transcription coactivator activity 57.06 0.7316 43 Mapoly0090s0070 [PF00169] PH domain 57.45 0.6670 44 Mapoly0004s0118 [KOG0121] Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily); [PTHR15241] TRANSFORMER-2-RELATED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58.31 0.6741 45 Mapoly0106s0044 [PF03980] Nnf1 63.48 0.6770 46 Mapoly0023s0072 [3.1.27.-] Endoribonucleases producing other than 5'-phosphomonoesters.; [K13148] integrator complex subunit 11 [EC:3.1.27.-]; [PF07521] RNA-metabolising metallo-beta-lactamase; [PTHR11203] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; [PF00753] Metallo-beta-lactamase superfamily; [PTHR11203:SF11] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; [PF10996] Beta-Casp domain; [KOG1136] Predicted cleavage and polyadenylation specificity factor (CPSF subunit) 63.99 0.6974 47 Mapoly0076s0002 [PTHR14854] NIF3L1BP1 PROTEIN-RELATED; [KOG3215] Uncharacterized conserved protein; [GO:0000445] THO complex part of transcription export complex; [GO:0006397] mRNA processing; [K13176] THO complex subunit 7; [PF05615] Tho complex subunit 7 64.93 0.6780 48 Mapoly0063s0059 [GO:0000812] Swr1 complex; [GO:0006338] chromatin remodeling; [GO:0006355] regulation of transcription, DNA-dependent; [GO:0031011] Ino80 complex; [PTHR11937:SF47] SUBFAMILY NOT NAMED; [GO:0035267] NuA4 histone acetyltransferase complex; [PF00022] Actin; [GO:0006281] DNA repair; [PTHR11937] ACTIN; [KOG0679] Actin-related protein - Arp4p/Act3p 65.35 0.7005 49 Mapoly0086s0067 [GO:0005524] ATP binding; [GO:0032300] mismatch repair complex; [KOG1979] DNA mismatch repair protein - MLH1 family; [PTHR10073] DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL); [PTHR10073:SF12] DNA MISMATCH REPAIR PROTEIN MUTL; [PF13589] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [K08734] DNA mismatch repair protein MLH1; [GO:0006298] mismatch repair; [GO:0030983] mismatched DNA binding; [PF01119] DNA mismatch repair protein, C-terminal domain 66.33 0.6571 50 Mapoly0189s0018 - 67.41 0.6772