Guide Gene
- Gene ID
- Mapoly0016s0052
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [K10752] histone-binding protein RBBP4; [GO:0005515] protein binding; [KOG0264] Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1; [PTHR22850] WD40 REPEAT FAMILY; [PF12265] Histone-binding protein RBBP4 or subunit C of CAF1 complex; [PF00400] WD domain, G-beta repeat
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0016s0052 [K10752] histone-binding protein RBBP4; [GO:0005515] protein binding; [KOG0264] Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1; [PTHR22850] WD40 REPEAT FAMILY; [PF12265] Histone-binding protein RBBP4 or subunit C of CAF1 complex; [PF00400] WD domain, G-beta repeat 0.00 1.0000 1 Mapoly0097s0033 [PTHR10870] CELL CYCLE CHECKPOINT PROTEIN RAD1; [KOG3194] Checkpoint 9-1-1 complex, RAD1 component; [PF02144] Repair protein Rad1/Rec1/Rad17; [GO:0005634] nucleus; [K02830] cell cycle checkpoint protein [EC:3.1.11.2]; [GO:0006281] DNA repair; [3.1.11.2] Exodeoxyribonuclease III. 2.45 0.7681 2 Mapoly0059s0052 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding 4.47 0.7174 3 Mapoly0044s0016 - 5.66 0.6702 4 Mapoly0059s0054 [GO:0006338] chromatin remodeling; [PTHR10019] SNF5; [GO:0000228] nuclear chromosome; [K11648] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; [PF04855] SNF5 / SMARCB1 / INI1 9.64 0.7105 5 Mapoly0019s0131 [PTHR23111] ZINC FINGER PROTEIN; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others 12.17 0.6296 6 Mapoly0141s0028 [PTHR23002] ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN; [PF06839] GRF zinc finger; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [GO:0003676] nucleic acid binding 12.65 0.6952 7 Mapoly0029s0084 - 12.73 0.6899 8 Mapoly0033s0093 [PTHR10825:SF5] E3 UBIQUITIN-PROTEIN LIGASE RING2; [PF00097] Zinc finger, C3HC4 type (RING finger); [GO:0046872] metal ion binding; [PTHR10825] RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT 13.08 0.6065 9 Mapoly0052s0093 [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [PTHR10108] METHYLTRANSFERASE; [PF01209] ubiE/COQ5 methyltransferase family; [K06127] ubiquinone biosynthesis methyltransferase [EC:2.1.1.-]; [PTHR10108:SF24] UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHYLTRANSFERASE; [KOG1540] Ubiquinone biosynthesis methyltransferase COQ5 13.49 0.6822 10 Mapoly0023s0060 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [GO:0004000] adenosine deaminase activity; [PTHR10910] EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN; [PF02137] Adenosine-deaminase (editase) domain 13.96 0.7064 11 Mapoly0113s0020 [GO:0003677] DNA binding; [PTHR12604:SF2] KU P70 DNA HELICASE; [K10884] ATP-dependent DNA helicase 2 subunit 1; [GO:0042162] telomeric DNA binding; [PF03730] Ku70/Ku80 C-terminal arm; [PF02735] Ku70/Ku80 beta-barrel domain; [PF03731] Ku70/Ku80 N-terminal alpha/beta domain; [GO:0043564] Ku70:Ku80 complex; [GO:0005634] nucleus; [GO:0004003] ATP-dependent DNA helicase activity; [GO:0003676] nucleic acid binding; [KOG2327] DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen); [PTHR12604] KU AUTOANTIGEN DNA HELICASE; [GO:0003684] damaged DNA binding; [GO:0006303] double-strand break repair via nonhomologous end joining; [PF02037] SAP domain; [GO:0000723] telomere maintenance 14.70 0.6963 12 Mapoly0006s0306 [GO:0005524] ATP binding; [PTHR22942] RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER; [GO:0003697] single-stranded DNA binding; [GO:0006281] DNA repair; [GO:0009432] SOS response; [PF00154] recA bacterial DNA recombination protein; [K03553] recombination protein RecA; [KOG1433] DNA repair protein RAD51/RHP55 14.97 0.6954 13 Mapoly0056s0134 [PTHR12197] SET AND MYND DOMAIN CONTAINING; [PF01753] MYND finger 16.91 0.6521 14 Mapoly0024s0018 [PTHR23147] SERINE/ARGININE RICH SPLICING FACTOR; [KOG4207] Predicted splicing factor, SR protein superfamily; [K12891] splicing factor, arginine/serine-rich 2; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18.65 0.7085 15 Mapoly0093s0007 [GO:0016020] membrane; [GO:0008137] NADH dehydrogenase (ubiquinone) activity; [PTHR12910] NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2; [GO:0009055] electron carrier activity; [PF05071] NADH ubiquinone oxidoreductase subunit NDUFA12; [PTHR12910:SF1] NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2 21.21 0.6363 16 Mapoly0080s0021 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [3.6.4.13] RNA helicase.; [K13117] ATP-dependent RNA helicase DDX35 [EC:3.6.4.13]; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold 22.18 0.6823 17 Mapoly0057s0042 [PTHR31307] FAMILY NOT NAMED; [KOG4282] Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain; [PF13837] Myb/SANT-like DNA-binding domain 26.12 0.5961 18 Mapoly0154s0010 - 26.65 0.6866 19 Mapoly0007s0225 - 27.11 0.6531 20 Mapoly0003s0234 [PTHR23139] RNA-BINDING PROTEIN; [K13154] U11/U12 small nuclear ribonucleoprotein 31 kDa protein; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [KOG4206] Spliceosomal protein snRNP-U1A/U2B; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27.75 0.6850 21 Mapoly0007s0061 [KOG1434] Meiotic recombination protein Dmc1; [PTHR22942] RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER; [K10869] RAD51-like protein 1; [PTHR22942:SF15] DNA REPAIR PROTEIN RAD51 HOMOLOG 2, R51H2; [PF08423] Rad51 29.24 0.6545 22 Mapoly0044s0012 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0006289] nucleotide-excision repair; [PTHR12831] TRANSCRIPTION INITIATION FACTOR IIH (TFIIH), POLYPEPTIDE 3-RELATED; [PF03850] Transcription factor Tfb4; [K03143] transcription initiation factor TFIIH subunit 3; [KOG2487] RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4; [PTHR12831:SF0] GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 3; [GO:0000439] core TFIIH complex 30.30 0.6349 23 Mapoly0147s0029 [PTHR21596] RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED; [PF01248] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 32.12 0.6223 24 Mapoly0032s0121 [PTHR22976] BIOTIN SYNTHASE; [PTHR22976:SF4] SUBFAMILY NOT NAMED; [PF04055] Radical SAM superfamily; [GO:0003824] catalytic activity; [GO:0051536] iron-sulfur cluster binding 37.68 0.6533 25 Mapoly0065s0033 [GO:0003723] RNA binding; [3.1.26.5] Ribonuclease P.; [K03538] ribonuclease P protein subunit POP4 [EC:3.1.26.5]; [GO:0000172] ribonuclease MRP complex; [PF01868] Domain of unknown function UPF0086; [PTHR13348] RIBONUCLEASE P; [GO:0006364] rRNA processing; [GO:0008033] tRNA processing; [GO:0030677] ribonuclease P complex; [GO:0006379] mRNA cleavage; [KOG4046] RNase MRP and P, subunit POP4/p29; [GO:0004540] ribonuclease activity 38.73 0.6719 26 Mapoly0187s0003 [PTHR22880] FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS; [K06062] histone acetyltransferase [EC:2.3.1.48]; [GO:0005515] protein binding; [PF00439] Bromodomain; [GO:0008080] N-acetyltransferase activity; [PF00583] Acetyltransferase (GNAT) family; [2.3.1.48] Histone acetyltransferase. 44.43 0.6791 27 Mapoly0099s0020 - 45.83 0.6310 28 Mapoly0117s0010 [PTHR11024] PROTEIN TRANSPORT PROTEIN SEC13-RELATED; [GO:0005515] protein binding; [KOG2445] Nuclear pore complex component (sc Seh1); [PF00400] WD domain, G-beta repeat 46.91 0.6330 29 Mapoly0024s0037 [K13151] snurportin-1; [KOG3132] m3G-cap-specific nuclear import receptor (Snurportin1); [PTHR13403:SF6] SNURPORTIN1 (RNUT1 PROTEIN) (RNA, U TRANSPORTER 1); [PTHR13403] SNURPORTIN1 (RNUT1 PROTEIN) (RNA, U TRANSPORTER 1) 47.43 0.6118 30 Mapoly0026s0137 - 49.38 0.6194 31 Mapoly0033s0067 [KOG2611] Neurochondrin/leucine-rich protein (Neurochondrin); [PTHR13109] NEUROCHONDRIN; [PF05536] Neurochondrin 51.50 0.6677 32 Mapoly0001s0495 [PF14368] Probable lipid transfer 53.07 0.6223 33 Mapoly0003s0036 - 53.10 0.6192 34 Mapoly0226s0007 [PF00817] impB/mucB/samB family; [2.7.7.7] DNA-directed DNA polymerase.; [GO:0006281] DNA repair; [PF11799] impB/mucB/samB family C-terminal domain; [PTHR11076] DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER; [PTHR11076:SF11] DNA POLYMERASE ETA; [GO:0003887] DNA-directed DNA polymerase activity; [GO:0003684] damaged DNA binding; [K03509] DNA polymerase eta subunit [EC:2.7.7.7] 56.22 0.6339 35 Mapoly0111s0002 [K12848] U4/U6.U5 tri-snRNP component SNU23; [PF12874] Zinc-finger of C2H2 type; [PTHR23067] DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN; [KOG4727] U1-like Zn-finger protein 57.55 0.6171 36 Mapoly0072s0033 [KOG1454] Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily); [PTHR10992] ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN; [PF12697] Alpha/beta hydrolase family 60.12 0.6350 37 Mapoly0076s0002 [PTHR14854] NIF3L1BP1 PROTEIN-RELATED; [KOG3215] Uncharacterized conserved protein; [GO:0000445] THO complex part of transcription export complex; [GO:0006397] mRNA processing; [K13176] THO complex subunit 7; [PF05615] Tho complex subunit 7 61.24 0.6335 38 Mapoly0052s0068 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 62.40 0.6324 39 Mapoly0104s0010 [PTHR17204:SF5] PRE-MRNA PROCESSING PROTEIN PRP39-RELATED; [K13217] pre-mRNA-processing factor 39; [KOG1258] mRNA processing protein; [GO:0006397] mRNA processing; [GO:0005634] nucleus; [PF05843] Suppressor of forked protein (Suf); [PTHR17204] PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 64.20 0.6638 40 Mapoly0019s0084 [GO:0030001] metal ion transport; [GO:0000166] nucleotide binding; [PF00702] haloacid dehalogenase-like hydrolase; [3.6.3.3] Cadmium-exporting ATPase.; [3.6.3.5] Zinc-exporting ATPase.; [PTHR24093] FAMILY NOT NAMED; [PF00403] Heavy-metal-associated domain; [GO:0046872] metal ion binding; [K01534] Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]; [KOG0207] Cation transport ATPase; [PF00122] E1-E2 ATPase 64.81 0.5725 41 Mapoly0057s0040 [PTHR21493] CGI-141-RELATED/LIPASE CONTAINING PROTEIN; [PF01764] Lipase (class 3); [GO:0006629] lipid metabolic process 66.82 0.5680 42 Mapoly0075s0019 [PF13661] 2OG-Fe(II) oxygenase superfamily; [PTHR14049] LEPRECAN 1 68.37 0.5724 43 Mapoly0023s0072 [3.1.27.-] Endoribonucleases producing other than 5'-phosphomonoesters.; [K13148] integrator complex subunit 11 [EC:3.1.27.-]; [PF07521] RNA-metabolising metallo-beta-lactamase; [PTHR11203] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; [PF00753] Metallo-beta-lactamase superfamily; [PTHR11203:SF11] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; [PF10996] Beta-Casp domain; [KOG1136] Predicted cleavage and polyadenylation specificity factor (CPSF subunit) 69.17 0.6502 44 Mapoly0032s0124 [PF04864] Allinase; [GO:0016846] carbon-sulfur lyase activity; [PTHR11751] SUBGROUP I AMINOTRANSFERASE RELATED; [PF04863] Alliinase EGF-like domain 69.62 0.5494 45 Mapoly0129s0044 - 72.28 0.6077 46 Mapoly0459s0001 - 74.33 0.5918 47 Mapoly0209s0009 [PF04266] ASCH domain 75.02 0.6226 48 Mapoly0010s0051 [PF12689] Acid Phosphatase; [GO:0016791] phosphatase activity; [PTHR17901] FAMILY NOT NAMED; [KOG4549] Magnesium-dependent phosphatase 75.30 0.5943 49 Mapoly0189s0018 - 75.89 0.6274 50 Mapoly0055s0054 [PTHR13476] UNCHARACTERIZED; [PTHR13476:SF0] SUBFAMILY NOT NAMED; [PF09340] Histone acetyltransferase subunit NuA4; [K11344] chromatin modification-related protein EAF6 76.52 0.6364