Download Gene Coexpression Data

Organism Platform ID Release Date Number of Genes Number of Samples Coexpression Data Codon Score *1 GO Score *2
Marchantia polymorpha Mpo-R1-17-12 2017.12.11 10913 266 - -

*1  :  Codon Score means the degree of coincidence between the gene coexpression and the codon usage similarity.

*2  :  GO Score means the degree of coincidence between the gene coexpression and the functional similarity.             

Data Format

Gene coexpression data folder contains a number of files, and file names correspond to the query gene IDs. Each file includes the coexpressed gene list as in the following format (Example about Mapoly0001s0025 in Mpo.v17-12.G10913-S266.quantile.mrgeo.d.geneid).

File Name
Mapoly0001s0025
Line1
Mapoly0102s0025    1.00    0.9677
Line2
Mapoly0058s0006    1.73    0.9601
Line3
Mapoly0066s0050    2.45    0.9643
Line4
Mapoly0083s0003    4.47    0.9598
Line5
Mapoly0006s0261    5.00    0.9563
  • Columns are tab-deliminated.
  • Lines are sorted by column2.
  • Column1: ID of coexpressed gene.
  • Column2: Matual Rank (MR). [smaller MR indicates stronger coexpression]
  • Column3: Pearson's Correlation Coefficient (PCC). [larger PCC indicates stronger coexpression]