Guide Gene

Gene ID
Mapoly0003s0234
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR23139] RNA-BINDING PROTEIN; [K13154] U11/U12 small nuclear ribonucleoprotein 31 kDa protein; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [KOG4206] Spliceosomal protein snRNP-U1A/U2B; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0003s0234 [PTHR23139] RNA-BINDING PROTEIN; [K13154] U11/U12 small nuclear ribonucleoprotein 31 kDa protein; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [KOG4206] Spliceosomal protein snRNP-U1A/U2B; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.00 1.0000
1 Mapoly0010s0030 [PTHR22880] FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS; [GO:0005515] protein binding; [PF00439] Bromodomain1.730.8532
2 Mapoly0059s0052 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding2.450.7862
3 Mapoly0020s0153 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF00580] UvrD/REP helicase N-terminal domain; [PF13361] UvrD-like helicase C-terminal domain; [GO:0016787] hydrolase activity; [KOG2108] 3'-5' DNA helicase; [3.6.4.12] DNA helicase.; [K03657] DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]; [GO:0004003] ATP-dependent DNA helicase activity; [PTHR11070] UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER3.740.8052
4 Mapoly0045s0077 [PTHR11807:SF2] CELL CYCLE PROTEIN MESJ; [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [PTHR11807] ATPASES OF THE PP SUPERFAMILY-RELATED; [GO:0016879] ligase activity, forming carbon-nitrogen bonds; [PF01171] PP-loop family; [GO:0008033] tRNA processing4.580.7979
5 Mapoly0014s0217 [GO:0005515] protein binding; [KOG0322] G-protein beta subunit-like protein GNB1L, contains WD repeats; [PTHR19854:SF1] GB DEF: GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN 1 G PROTEIN BETA-S; [PTHR19854] TRANSDUCIN BETA-LIKE 3; [PF00400] WD domain, G-beta repeat5.290.7836
6 Mapoly0072s0033 [KOG1454] Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily); [PTHR10992] ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN; [PF12697] Alpha/beta hydrolase family9.490.7803
7 Mapoly0037s0071 [GO:0006355] regulation of transcription, DNA-dependent; [KOG0835] Cyclin L; [GO:0019901] protein kinase binding; [PF00134] Cyclin, N-terminal domain; [PTHR10026] CYCLIN; [PTHR10026:SF13] CYCLIN-L1-RELATED; [GO:0000079] regulation of cyclin-dependent protein serine/threonine kinase activity10.720.7870
8 Mapoly0129s0044 -13.190.7307
9 Mapoly0104s0042 [PTHR22846:SF2] TRANSDUCIN BETA-LIKE 1; [GO:0005515] protein binding; [PTHR22846] WD40 REPEAT PROTEIN; [KOG0273] Beta-transducin family (WD-40 repeat) protein; [PF08513] LisH; [PF00400] WD domain, G-beta repeat13.270.7877
10 Mapoly0041s0053 [K13099] CD2 antigen cytoplasmic tail-binding protein 2; [PTHR13138:SF3] SUBFAMILY NOT NAMED; [PTHR13138] PROTEIN LIN1; [KOG2950] Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain13.560.7149
11 Mapoly0001s0348 [KOG1342] Histone deacetylase complex, catalytic component RPD3; [PF00850] Histone deacetylase domain; [PTHR10625] HISTONE DEACETYLASE14.280.7520
12 Mapoly0021s0138 [KOG1548] Transcription elongation factor TAT-SF1; [GO:0005515] protein binding; [K13093] HIV Tat-specific factor 1; [PF02213] GYF domain; [PTHR15608] SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2; [PF14237] Domain of unknown function (DUF4339); [GO:0003676] nucleic acid binding; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)14.420.7808
13 Mapoly0001s0322 [PTHR24022:SF20] PROGRAMMED CELL DEATH PROTEIN 7; [PTHR24022] COMPLEMENT C1Q-RELATED14.970.7568
14 Mapoly0001s0195 [GO:0070985] TFIIK complex; [GO:0006355] regulation of transcription, DNA-dependent; [GO:0016538] cyclin-dependent protein serine/threonine kinase regulator activity; [GO:0019901] protein kinase binding; [PTHR10026:SF8] CYCLIN H; [PF00134] Cyclin, N-terminal domain; [PTHR10026] CYCLIN; [KOG2496] Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit; [GO:0006351] transcription, DNA-dependent; [GO:0000079] regulation of cyclin-dependent protein serine/threonine kinase activity15.170.7384
15 Mapoly0013s0166 [KOG1731] FAD-dependent sulfhydryl oxidase/quiescin and related proteins; [GO:0016972] thiol oxidase activity; [GO:0055114] oxidation-reduction process; [GO:0045454] cell redox homeostasis; [PTHR22897:SF8] SUBFAMILY NOT NAMED; [PTHR22897] QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE; [PF04777] Erv1 / Alr family; [PF00085] Thioredoxin15.560.7403
16 Mapoly0014s0032 [PTHR14873] FAMILY NOT NAMED; [PF10521] Protein of unknown function (DUF2454); [PTHR14873:SF1] SUBFAMILY NOT NAMED16.120.7599
17 Mapoly0154s0010 -16.430.7541
18 Mapoly0065s0033 [GO:0003723] RNA binding; [3.1.26.5] Ribonuclease P.; [K03538] ribonuclease P protein subunit POP4 [EC:3.1.26.5]; [GO:0000172] ribonuclease MRP complex; [PF01868] Domain of unknown function UPF0086; [PTHR13348] RIBONUCLEASE P; [GO:0006364] rRNA processing; [GO:0008033] tRNA processing; [GO:0030677] ribonuclease P complex; [GO:0006379] mRNA cleavage; [KOG4046] RNase MRP and P, subunit POP4/p29; [GO:0004540] ribonuclease activity16.880.7445
19 Mapoly0029s0009 [PF12313] NPR1/NIM1 like defence protein C terminal; [PF00651] BTB/POZ domain; [GO:0005515] protein binding; [PF12796] Ankyrin repeats (3 copies); [PTHR24198] ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN18.000.7246
20 Mapoly0021s0158 [GO:0008168] methyltransferase activity; [PTHR11006] PROTEIN ARGININE N-METHYLTRANSFERASE; [PTHR11006:SF4] PROTEIN ARGININE N-METHYLTRANSFERASE 7; [GO:0006479] protein methylation20.710.7220
21 Mapoly0056s0134 [PTHR12197] SET AND MYND DOMAIN CONTAINING; [PF01753] MYND finger20.930.6845
22 Mapoly0002s0230 [GO:0003677] DNA binding; [GO:0000784] nuclear chromosome, telomeric region; [PF02765] Telomeric single stranded DNA binding POT1/CDC13; [GO:0043047] single-stranded telomeric DNA binding; [PTHR14513] PROTECTION OF TELOMERES 1; [KOG4757] Predicted telomere binding protein; [GO:0000723] telomere maintenance21.820.7342
23 Mapoly0116s0006 [PF00651] BTB/POZ domain; [PF07707] BTB And C-terminal Kelch; [GO:0005515] protein binding; [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN22.910.7412
24 Mapoly0009s0161 [PTHR15606:SF4] SUBFAMILY NOT NAMED; [PF00226] DnaJ domain; [PTHR15606] DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED; [KOG1150] Predicted molecular chaperone (DnaJ superfamily); [K09528] DnaJ homolog subfamily C member 823.370.6794
25 Mapoly0002s0236 [PTHR10782:SF4] SUBFAMILY NOT NAMED; [PTHR10782] ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN; [GO:0008270] zinc ion binding; [GO:0019789] SUMO ligase activity; [PF02891] MIZ/SP-RING zinc finger25.690.7720
26 Mapoly0038s0101 [K12837] splicing factor U2AF 65 kDa subunit; [PTHR23139] RNA-BINDING PROTEIN; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG0120] Splicing factor U2AF, large subunit (RRM superfamily); [GO:0003676] nucleic acid binding; [PTHR23139:SF9] SPLICING FACTOR U2AF LARGE SUBUNIT; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)25.690.7742
27 Mapoly0052s0068 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE25.790.7246
28 Mapoly0014s0064 [PTHR10552] U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A; [K11092] U2 small nuclear ribonucleoprotein A'; [KOG1644] U2-associated snRNP A' protein; [PF14580] Leucine-rich repeat27.280.7618
29 Mapoly0016s0052 [K10752] histone-binding protein RBBP4; [GO:0005515] protein binding; [KOG0264] Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1; [PTHR22850] WD40 REPEAT FAMILY; [PF12265] Histone-binding protein RBBP4 or subunit C of CAF1 complex; [PF00400] WD domain, G-beta repeat27.750.6850
30 Mapoly0042s0063 [PF01494] FAD binding domain; [KOG3855] Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis; [PTHR13789] MONOOXYGENASE29.600.6347
31 Mapoly0154s0022 [GO:0003723] RNA binding; [GO:0016787] hydrolase activity; [PTHR23114] FAMILY NOT NAMED; [PF05026] Dcp2, box A domain; [GO:0030145] manganese ion binding; [PTHR23114:SF9] SUBFAMILY NOT NAMED; [3.-.-.-] Hydrolases.; [KOG2839] Diadenosine and diphosphoinositol polyphosphate phosphohydrolase; [PF00293] NUDIX domain; [K12613] mRNA-decapping enzyme subunit 2 [EC:3.-.-.-]29.980.7295
32 Mapoly0113s0030 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K14440] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:3.6.4.12]; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [KOG1000] Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily; [PF00271] Helicase conserved C-terminal domain; [PTHR10799:SF43] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 130.590.7094
33 Mapoly0019s0098 [PF13345] Domain of unknown function (DUF4098)34.600.6955
34 Mapoly0040s0067 [GO:0016758] transferase activity, transferring hexosyl groups; [PF00201] UDP-glucoronosyl and UDP-glucosyl transferase; [PTHR11926] GLUCOSYL/GLUCURONOSYL TRANSFERASES; [GO:0008152] metabolic process; [KOG1192] UDP-glucuronosyl and UDP-glucosyl transferase35.360.7116
35 Mapoly0025s0110 -36.330.7167
36 Mapoly0063s0002 [PF01480] PWI domain; [K13171] serine/arginine repetitive matrix protein 1; [PTHR23148] SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN; [GO:0006397] mRNA processing; [KOG2146] Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain)37.420.7433
37 Mapoly0097s0033 [PTHR10870] CELL CYCLE CHECKPOINT PROTEIN RAD1; [KOG3194] Checkpoint 9-1-1 complex, RAD1 component; [PF02144] Repair protein Rad1/Rec1/Rad17; [GO:0005634] nucleus; [K02830] cell cycle checkpoint protein [EC:3.1.11.2]; [GO:0006281] DNA repair; [3.1.11.2] Exodeoxyribonuclease III.37.700.7125
38 Mapoly0174s0020 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [PF13086] AAA domain; [PF13087] AAA domain; [KOG1801] tRNA-splicing endonuclease positive effector (SEN1)40.250.7515
39 Mapoly0100s0056 [2.5.1.-] Transferring alkyl or aryl groups, other than methyl groups.; [GO:0004659] prenyltransferase activity; [K06125] 4-hydroxybenzoate hexaprenyltransferase [EC:2.5.1.-]; [GO:0016021] integral to membrane; [PTHR11048:SF7] SUBFAMILY NOT NAMED; [PTHR11048] PRENYLTRANSFERASES; [PF01040] UbiA prenyltransferase family; [KOG1381] Para-hydroxybenzoate-polyprenyl transferase40.820.6661
40 Mapoly0158s0019 [PTHR24012] FAMILY NOT NAMED; [KOG4205] RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)42.430.7376
41 Mapoly0055s0054 [PTHR13476] UNCHARACTERIZED; [PTHR13476:SF0] SUBFAMILY NOT NAMED; [PF09340] Histone acetyltransferase subunit NuA4; [K11344] chromatin modification-related protein EAF642.500.7167
42 Mapoly0005s0201 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0005515] protein binding; [GO:0003700] sequence-specific DNA binding transcription factor activity; [PTHR12348] TSC22; [PF00498] FHA domain42.850.7351
43 Mapoly0010s0132 [KOG4825] Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa); [PF02151] UvrB/uvrC motif; [GO:0005515] protein binding; [PTHR13371] GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN; [PTHR13371:SF0] SUBFAMILY NOT NAMED42.850.6875
44 Mapoly0019s0054 [PTHR13040:SF2] SUBFAMILY NOT NAMED; [GO:0005737] cytoplasm; [K08339] autophagy-related protein 5; [PTHR13040] AUTOPHAGY PROTEIN 5; [GO:0006914] autophagy; [PF04106] Autophagy protein Apg5; [KOG2976] Protein involved in autophagy and nutrient starvation42.850.6632
45 Mapoly0065s0024 -42.990.6883
46 Mapoly0091s0013 [GO:0003723] RNA binding; [KOG2202] U2 snRNP splicing factor, small subunit, and related proteins; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12620] U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT; [GO:0005634] nucleus; [K12836] splicing factor U2AF 35 kDa subunit; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [GO:0046872] metal ion binding43.080.7527
47 Mapoly0187s0003 [PTHR22880] FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS; [K06062] histone acetyltransferase [EC:2.3.1.48]; [GO:0005515] protein binding; [PF00439] Bromodomain; [GO:0008080] N-acetyltransferase activity; [PF00583] Acetyltransferase (GNAT) family; [2.3.1.48] Histone acetyltransferase.45.920.7241
48 Mapoly0015s0062 [GO:0006284] base-excision repair; [GO:0006289] nucleotide-excision repair; [4.2.99.18] DNA-(apurinic or apyrimidinic site) lyase.; [GO:0008270] zinc ion binding; [3.2.2.23] DNA-formamidopyrimidine glycosylase.; [GO:0003906] DNA-(apurinic or apyrimidinic site) lyase activity; [GO:0016799] hydrolase activity, hydrolyzing N-glycosyl compounds; [GO:0003684] damaged DNA binding; [PF06831] Formamidopyrimidine-DNA glycosylase H2TH domain; [PF01149] Formamidopyrimidine-DNA glycosylase N-terminal domain; [PTHR22993] FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; [K10563] formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]46.090.6518
49 Mapoly0090s0070 [PF00169] PH domain46.910.6849
50 Mapoly0113s0020 [GO:0003677] DNA binding; [PTHR12604:SF2] KU P70 DNA HELICASE; [K10884] ATP-dependent DNA helicase 2 subunit 1; [GO:0042162] telomeric DNA binding; [PF03730] Ku70/Ku80 C-terminal arm; [PF02735] Ku70/Ku80 beta-barrel domain; [PF03731] Ku70/Ku80 N-terminal alpha/beta domain; [GO:0043564] Ku70:Ku80 complex; [GO:0005634] nucleus; [GO:0004003] ATP-dependent DNA helicase activity; [GO:0003676] nucleic acid binding; [KOG2327] DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen); [PTHR12604] KU AUTOANTIGEN DNA HELICASE; [GO:0003684] damaged DNA binding; [GO:0006303] double-strand break repair via nonhomologous end joining; [PF02037] SAP domain; [GO:0000723] telomere maintenance47.560.6932
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