Guide Gene

Gene ID
Mapoly0015s0062
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0006284] base-excision repair; [GO:0006289] nucleotide-excision repair; [4.2.99.18] DNA-(apurinic or apyrimidinic site) lyase.; [GO:0008270] zinc ion binding; [3.2.2.23] DNA-formamidopyrimidine glycosylase.; [GO:0003906] DNA-(apurinic or apyrimidinic site) lyase activity; [GO:0016799] hydrolase activity, hydrolyzing N-glycosyl compounds; [GO:0003684] damaged DNA binding; [PF06831] Formamidopyrimidine-DNA glycosylase H2TH domain; [PF01149] Formamidopyrimidine-DNA glycosylase N-terminal domain; [PTHR22993] FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; [K10563] formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0015s0062 [GO:0006284] base-excision repair; [GO:0006289] nucleotide-excision repair; [4.2.99.18] DNA-(apurinic or apyrimidinic site) lyase.; [GO:0008270] zinc ion binding; [3.2.2.23] DNA-formamidopyrimidine glycosylase.; [GO:0003906] DNA-(apurinic or apyrimidinic site) lyase activity; [GO:0016799] hydrolase activity, hydrolyzing N-glycosyl compounds; [GO:0003684] damaged DNA binding; [PF06831] Formamidopyrimidine-DNA glycosylase H2TH domain; [PF01149] Formamidopyrimidine-DNA glycosylase N-terminal domain; [PTHR22993] FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; [K10563] formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] 0.00 1.0000
1 Mapoly0059s0052 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding1.410.7551
2 Mapoly0091s0089 -4.580.7188
3 Mapoly0019s0116 [K12449] UDP-apiose/xylose synthase; [PF01370] NAD dependent epimerase/dehydratase family; [GO:0003824] catalytic activity; [KOG1429] dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase; [GO:0050662] coenzyme binding; [PTHR10366] NAD DEPENDENT EPIMERASE/DEHYDRATASE5.480.6752
4 Mapoly0046s0082 [GO:0000287] magnesium ion binding; [GO:0004743] pyruvate kinase activity; [GO:0006096] glycolysis; [GO:0030955] potassium ion binding; [PF02887] Pyruvate kinase, alpha/beta domain; [PF00224] Pyruvate kinase, barrel domain; [K00873] pyruvate kinase [EC:2.7.1.40]; [KOG2323] Pyruvate kinase; [PTHR11817] PYRUVATE KINASE; [2.7.1.40] Pyruvate kinase.7.140.6526
5 Mapoly0002s0271 -7.350.7205
6 Mapoly0014s0073 [KOG1663] O-methyltransferase; [GO:0008171] O-methyltransferase activity; [PTHR10509] O-METHYLTRANSFERASE-RELATED; [PF01596] O-methyltransferase10.200.7100
7 Mapoly0051s0110 [KOG2855] Ribokinase; [PF00294] pfkB family carbohydrate kinase; [PTHR10584] SUGAR KINASE15.000.6550
8 Mapoly0021s0024 [PF01370] NAD dependent epimerase/dehydratase family; [GO:0003824] catalytic activity; [GO:0050662] coenzyme binding; [KOG1502] Flavonol reductase/cinnamoyl-CoA reductase; [PTHR10366] NAD DEPENDENT EPIMERASE/DEHYDRATASE17.490.6077
9 Mapoly0040s0067 [GO:0016758] transferase activity, transferring hexosyl groups; [PF00201] UDP-glucoronosyl and UDP-glucosyl transferase; [PTHR11926] GLUCOSYL/GLUCURONOSYL TRANSFERASES; [GO:0008152] metabolic process; [KOG1192] UDP-glucuronosyl and UDP-glucosyl transferase20.780.6767
10 Mapoly0113s0030 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K14440] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:3.6.4.12]; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [KOG1000] Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily; [PF00271] Helicase conserved C-terminal domain; [PTHR10799:SF43] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 123.690.6730
11 Mapoly0036s0043 [GO:0005515] protein binding; [PF00856] SET domain; [PTHR22884] SET DOMAIN PROTEINS25.420.6508
12 Mapoly0187s0003 [PTHR22880] FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS; [K06062] histone acetyltransferase [EC:2.3.1.48]; [GO:0005515] protein binding; [PF00439] Bromodomain; [GO:0008080] N-acetyltransferase activity; [PF00583] Acetyltransferase (GNAT) family; [2.3.1.48] Histone acetyltransferase.26.150.6891
13 Mapoly0014s0064 [PTHR10552] U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A; [K11092] U2 small nuclear ribonucleoprotein A'; [KOG1644] U2-associated snRNP A' protein; [PF14580] Leucine-rich repeat26.170.7072
14 Mapoly0058s0108 [GO:0003677] DNA binding; [KOG0214] RNA polymerase II, second largest subunit; [PF04567] RNA polymerase Rpb2, domain 5; [PF04565] RNA polymerase Rpb2, domain 3; [PTHR20856] DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2; [PF00562] RNA polymerase Rpb2, domain 6; [PF04566] RNA polymerase Rpb2, domain 4; [GO:0032549] ribonucleoside binding; [PF04561] RNA polymerase Rpb2, domain 2; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF04560] RNA polymerase Rpb2, domain 7; [PF04563] RNA polymerase beta subunit32.830.6812
15 Mapoly0028s0032 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [K12733] peptidyl-prolyl cis-trans isomerase-like 1 [EC:5.2.1.8]; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [KOG0881] Cyclophilin type peptidyl-prolyl cis-trans isomerase39.660.6686
16 Mapoly0022s0148 [PTHR23245] UNCHARACTERIZED; [PTHR23245:SF25] METHIONINE 10+ HOMOLOG; [PF02475] Met-10+ like-protein; [GO:0016740] transferase activity; [KOG2078] tRNA modification enzyme; [K07055] TatD-related deoxyribonuclease40.300.6048
17 Mapoly0010s0011 [GO:0005737] cytoplasm; [GO:0006974] response to DNA damage stimulus; [GO:0006281] DNA repair; [PF03652] Uncharacterised protein family (UPF0081); [GO:0016788] hydrolase activity, acting on ester bonds; [3.1.-.-] Acting on ester bonds.; [GO:0006310] DNA recombination; [K07447] putative holliday junction resolvase [EC:3.1.-.-]41.570.6364
18 Mapoly0009s0203 -42.140.6694
19 Mapoly0005s0196 [PTHR24011] FAMILY NOT NAMED; [PF04059] RNA recognition motif 2; [GO:0003676] nucleic acid binding; [KOG4660] Protein Mei2, essential for commitment to meiosis, and related proteins; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)43.160.6765
20 Mapoly0056s0047 -44.400.5928
21 Mapoly0129s0047 [K10862] tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]; [KOG2031] Tyrosyl-DNA phosphodiesterase; [PTHR12415:SF0] SUBFAMILY NOT NAMED; [GO:0005634] nucleus; [GO:0006281] DNA repair; [PF06087] Tyrosyl-DNA phosphodiesterase; [GO:0008081] phosphoric diester hydrolase activity; [PTHR12415] TYROSYL-DNA PHOSPHODIESTERASE 1; [3.1.4.-] Phosphoric diester hydrolases.45.170.6005
22 Mapoly0003s0234 [PTHR23139] RNA-BINDING PROTEIN; [K13154] U11/U12 small nuclear ribonucleoprotein 31 kDa protein; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [KOG4206] Spliceosomal protein snRNP-U1A/U2B; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)46.090.6518
23 Mapoly0009s0238 [PTHR31232] FAMILY NOT NAMED; [PF05938] Plant self-incompatibility protein S146.320.6328
24 Mapoly0088s0005 [PTHR12270:SF6] GLYCOSYLTRANSFERASE-RELATED; [KOG3765] Predicted glycosyltransferase; [PF13896] Glycosyl-transferase for dystroglycan; [K09668] glycosyltransferase-like protein LARGE; [PTHR12270] GLYCOSYLTRANSFERASE-RELATED47.750.6048
25 Mapoly0140s0033 [GO:0005524] ATP binding; [KOG1187] Serine/threonine protein kinase; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE48.500.6548
26 Mapoly0001s0311 [PTHR15131] SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1; [PF09808] Small nuclear RNA activating complex (SNAPc), subunit SNAP4353.220.6419
27 Mapoly0022s0178 [KOG1339] Aspartyl protease; [PF14543] Xylanase inhibitor N-terminal; [PTHR13683] ASPARTYL PROTEASES; [PF14541] Xylanase inhibitor C-terminal; [GO:0004190] aspartic-type endopeptidase activity; [GO:0006508] proteolysis58.970.6112
28 Mapoly0214s0003 [KOG1342] Histone deacetylase complex, catalytic component RPD3; [PF00850] Histone deacetylase domain; [PTHR10625] HISTONE DEACETYLASE63.060.5601
29 Mapoly0168s0005 [PTHR14255:SF4] SUBFAMILY NOT NAMED; [PTHR14255] ATP-DEPENDENT PROTEASE (CEREBLON); [KOG1400] Predicted ATP-dependent protease PIL, contains LON domain; [GO:0004176] ATP-dependent peptidase activity; [K11793] cereblon; [PF02190] ATP-dependent protease La (LON) domain; [GO:0006508] proteolysis65.360.5867
30 Mapoly0001s0501 [PF12681] Glyoxalase-like domain66.500.6472
31 Mapoly0007s0152 [PTHR23147] SERINE/ARGININE RICH SPLICING FACTOR; [KOG4207] Predicted splicing factor, SR protein superfamily; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)67.230.6486
32 Mapoly0010s0030 [PTHR22880] FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS; [GO:0005515] protein binding; [PF00439] Bromodomain67.660.6474
33 Mapoly0096s0048 [GO:0030915] Smc5-Smc6 complex; [PTHR21330] UNCHARACTERIZED; [GO:0019789] SUMO ligase activity; [PF11789] Zinc-finger of the MIZ type in Nse subunit; [GO:0000724] double-strand break repair via homologous recombination67.810.6198
34 Mapoly0165s0015 -71.870.5896
35 Mapoly0007s0066 [GO:0030915] Smc5-Smc6 complex; [PTHR19306] STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5, SMC6); [PTHR19306:SF1] STRUCTURAL MAINTENANCE OF CHROMOSOMES 5 SMC5; [KOG0979] Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily; [PF02463] RecF/RecN/SMC N terminal domain; [GO:0006281] DNA repair; [GO:0000724] double-strand break repair via homologous recombination72.070.6551
36 Mapoly0189s0018 -73.240.6269
37 Mapoly0100s0056 [2.5.1.-] Transferring alkyl or aryl groups, other than methyl groups.; [GO:0004659] prenyltransferase activity; [K06125] 4-hydroxybenzoate hexaprenyltransferase [EC:2.5.1.-]; [GO:0016021] integral to membrane; [PTHR11048:SF7] SUBFAMILY NOT NAMED; [PTHR11048] PRENYLTRANSFERASES; [PF01040] UbiA prenyltransferase family; [KOG1381] Para-hydroxybenzoate-polyprenyl transferase75.320.5992
38 Mapoly0068s0050 [PTHR32295:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [PF00612] IQ calmodulin-binding motif; [PTHR32295] FAMILY NOT NAMED; [PF13178] Protein of unknown function (DUF4005)75.830.6113
39 Mapoly0011s0104 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [KOG0546] HSP90 co-chaperone CPR7/Cyclophilin; [GO:0006457] protein folding78.610.6321
40 Mapoly0199s0010 [PF00188] Cysteine-rich secretory protein family; [PTHR10334] CYSTEINE-RICH SECRETORY PROTEIN-RELATED83.320.6066
41 Mapoly0117s0010 [PTHR11024] PROTEIN TRANSPORT PROTEIN SEC13-RELATED; [GO:0005515] protein binding; [KOG2445] Nuclear pore complex component (sc Seh1); [PF00400] WD domain, G-beta repeat86.610.5990
42 Mapoly0004s0058 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PTHR13215:SF4] SUBFAMILY NOT NAMED; [PF08766] DEK C terminal domain; [PF02229] Transcriptional Coactivator p15 (PC4); [KOG2712] Transcriptional coactivator; [PTHR13215] RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR; [GO:0003713] transcription coactivator activity90.860.6281
43 Mapoly0007s0156 [PTHR31745] FAMILY NOT NAMED; [PF08536] Whirly transcription factor91.370.6274
44 Mapoly0051s0085 [KOG2267] Eukaryotic-type DNA primase, large subunit; [GO:0006269] DNA replication, synthesis of RNA primer; [GO:0003896] DNA primase activity; [PTHR10537] DNA PRIMASE LARGE SUBUNIT; [K02685] DNA primase large subunit [EC:2.7.7.-]; [PF04104] Eukaryotic and archaeal DNA primase, large subunit; [2.7.7.-] Nucleotidyltransferases.92.120.6432
45 Mapoly0012s0102 [PTHR23365] POLY-A BINDING PROTEIN 2; [K14396] polyadenylate-binding protein 2; [KOG4209] Splicing factor RNPS1, SR protein superfamily; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)92.160.6318
46 Mapoly0014s0217 [GO:0005515] protein binding; [KOG0322] G-protein beta subunit-like protein GNB1L, contains WD repeats; [PTHR19854:SF1] GB DEF: GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN 1 G PROTEIN BETA-S; [PTHR19854] TRANSDUCIN BETA-LIKE 3; [PF00400] WD domain, G-beta repeat93.200.6138
47 Mapoly0037s0132 [PF00450] Serine carboxypeptidase; [PTHR11802] SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE; [KOG1282] Serine carboxypeptidases (lysosomal cathepsin A); [GO:0004185] serine-type carboxypeptidase activity; [GO:0006508] proteolysis94.680.5497
48 Mapoly0064s0076 -96.990.5983
49 Mapoly0061s0010 [GO:0006269] DNA replication, synthesis of RNA primer; [GO:0003896] DNA primase activity; [PTHR10536] DNA PRIMASE SMALL SUBUNIT; [KOG2851] Eukaryotic-type DNA primase, catalytic (small) subunit; [K02684] DNA primase small subunit [EC:2.7.7.-]; [2.7.7.-] Nucleotidyltransferases.; [PF01896] Eukaryotic and archaeal DNA primase small subunit99.120.6378
50 Mapoly0002s0230 [GO:0003677] DNA binding; [GO:0000784] nuclear chromosome, telomeric region; [PF02765] Telomeric single stranded DNA binding POT1/CDC13; [GO:0043047] single-stranded telomeric DNA binding; [PTHR14513] PROTECTION OF TELOMERES 1; [KOG4757] Predicted telomere binding protein; [GO:0000723] telomere maintenance99.140.6146
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