Guide Gene

Gene ID
Mapoly0044s0136
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF12171] Zinc-finger double-stranded RNA-binding; [K13104] zinc finger protein 830; [PTHR13278] UNCHARACTERIZED; [KOG3032] Uncharacterized conserved protein

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0044s0136 [PF12171] Zinc-finger double-stranded RNA-binding; [K13104] zinc finger protein 830; [PTHR13278] UNCHARACTERIZED; [KOG3032] Uncharacterized conserved protein 0.00 1.0000
1 Mapoly0009s0086 [PTHR10741:SF4] PUTATIVE UNCHARACTERIZED PROTEIN ORF-C08_005 (PUTATIVE UNCHARACTERIZED PROTEIN); [PTHR10741] TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X; [GO:0043565] sequence-specific DNA binding; [KOG3066] Translin-associated protein X; [PF01997] Translin family6.930.6938
2 Mapoly0001s0238 [PF02978] Signal peptide binding domain; [GO:0048500] signal recognition particle; [PF00448] SRP54-type protein, GTPase domain; [GO:0008312] 7S RNA binding; [K03106] signal recognition particle subunit SRP54; [KOG0780] Signal recognition particle, subunit Srp54; [GO:0006614] SRP-dependent cotranslational protein targeting to membrane; [PF02881] SRP54-type protein, helical bundle domain; [GO:0005525] GTP binding; [PTHR11564:SF5] SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN; [PTHR11564] GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS7.620.7011
3 Mapoly0004s0034 [PTHR21738:SF0] SUBFAMILY NOT NAMED; [PTHR21738] UNCHARACTERIZED; [KOG3190] Uncharacterized conserved protein; [PF06102] Domain of unknown function (DUF947)7.750.6904
4 Mapoly0015s0164 [GO:0003677] DNA binding; [PF02362] B3 DNA binding domain; [PTHR31391] FAMILY NOT NAMED11.000.7284
5 Mapoly0068s0080 [PF07719] Tetratricopeptide repeat; [KOG0543] FKBP-type peptidyl-prolyl cis-trans isomerase; [PTHR10516] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF13414] TPR repeat; [GO:0006457] protein folding; [PF00254] FKBP-type peptidyl-prolyl cis-trans isomerase12.730.6364
6 Mapoly0031s0028 -15.170.6889
7 Mapoly0013s0192 [PF05477] Surfeit locus protein 2 (SURF2); [PTHR32175] FAMILY NOT NAMED16.490.6586
8 Mapoly0074s0025 [PTHR12933] ORF PROTEIN-RELATED; [PF06862] Protein of unknown function (DUF1253); [KOG2340] Uncharacterized conserved protein; [GO:0005634] nucleus19.750.6369
9 Mapoly0002s0007 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [GO:0009451] RNA modification; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase; [PTHR21600] RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B; [PF01479] S4 domain21.210.6684
10 Mapoly0094s0008 [PTHR21100:SF9] SUBFAMILY NOT NAMED; [PTHR21100] FAMILY NOT NAMED; [GO:0016272] prefoldin complex; [KOG1760] Molecular chaperone Prefoldin, subunit 4; [GO:0006457] protein folding; [K09550] prefoldin subunit 4; [GO:0051082] unfolded protein binding; [PF01920] Prefoldin subunit22.320.6884
11 Mapoly0013s0140 [K13107] RNA-binding motif protein, X-linked 2; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [PTHR23139] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)23.320.6542
12 Mapoly0036s0004 [GO:0034477] U6 snRNA 3'-end processing; [PTHR13522] UNCHARACTERIZED; [KOG3102] Uncharacterized conserved protein; [GO:0004518] nuclease activity; [PF09749] Uncharacterised conserved protein25.690.6061
13 Mapoly0016s0021 -30.590.6266
14 Mapoly0039s0008 [PF01926] 50S ribosome-binding GTPase; [PTHR11702] DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED; [PTHR11702:SF26] GTP-BINDING PROTEIN-RELATED; [KOG1486] GTP-binding protein DRG2 (ODN superfamily); [PF02824] TGS domain; [GO:0005525] GTP binding33.260.6594
15 Mapoly0001s0457 [PTHR14360:SF1] UNCHARACTERIZED; [PF07798] Protein of unknown function (DUF1640); [KOG3156] Uncharacterized membrane protein; [PTHR14360] UNCHARACTERIZED33.500.6684
16 Mapoly0100s0024 [KOG1763] Uncharacterized conserved protein, contains CCCH-type Zn-finger; [PTHR12681] ZINC FINGER-CONTAINING PROTEIN P48ZNF33.540.6393
17 Mapoly0014s0191 [GO:0006355] regulation of transcription, DNA-dependent; [PTHR15970] FAMILY NOT NAMED; [GO:0032783] ELL-EAF complex; [KOG4795] Protein associated with transcriptional elongation factor ELL; [PTHR15970:SF2] GB DEF: HYPOTHETICAL PROTEIN F23N20.7 (AT1G71080/F23N20_7); [PF09816] RNA polymerase II transcription elongation factor37.750.5981
18 Mapoly0007s0156 [PTHR31745] FAMILY NOT NAMED; [PF08536] Whirly transcription factor37.830.6727
19 Mapoly0009s0136 [PTHR24012] FAMILY NOT NAMED; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)40.300.6811
20 Mapoly0009s0161 [PTHR15606:SF4] SUBFAMILY NOT NAMED; [PF00226] DnaJ domain; [PTHR15606] DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED; [KOG1150] Predicted molecular chaperone (DnaJ superfamily); [K09528] DnaJ homolog subfamily C member 840.400.6148
21 Mapoly0011s0137 [K03504] DNA polymerase delta subunit 3; [GO:0006260] DNA replication; [PTHR17598] FAMILY NOT NAMED; [PF09507] DNA polymerase subunit Cdc27; [GO:0005634] nucleus45.340.6728
22 Mapoly0167s0006 -50.350.6612
23 Mapoly0028s0103 [PF01713] Smr domain; [GO:0003677] DNA binding; [PF00488] MutS domain V; [GO:0005524] ATP binding; [PTHR11361] DNA MISMATCH REPAIR MUTS RELATED PROTEINS; [K07456] DNA mismatch repair protein MutS2; [GO:0016887] ATPase activity; [PTHR11361:SF14] DNA MISMATCH REPAIR PROTEIN MUTS2; [GO:0006298] mismatch repair; [GO:0030983] mismatched DNA binding; [GO:0045910] negative regulation of DNA recombination52.310.6075
24 Mapoly0039s0099 [PF00169] PH domain; [PTHR12092] PLECKSTRIN52.650.6333
25 Mapoly0054s0054 [KOG3276] Uncharacterized conserved protein, contains YggU domain; [PTHR13420:SF1] gb def: y66d12a.8.p [caenorhabditis elegans]; [K09131] hypothetical protein; [PTHR13420] UNCHARACTERIZED; [PF02594] Uncharacterised ACR, YggU family COG187253.850.5824
26 Mapoly0039s0001 -57.580.6588
27 Mapoly0004s0058 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PTHR13215:SF4] SUBFAMILY NOT NAMED; [PF08766] DEK C terminal domain; [PF02229] Transcriptional Coactivator p15 (PC4); [KOG2712] Transcriptional coactivator; [PTHR13215] RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR; [GO:0003713] transcription coactivator activity62.710.6469
28 Mapoly0102s0010 [PF10235] Microtubule-associated protein CRIPT; [KOG3476] Microtubule-associated protein CRIPT; [PTHR11800] DNA-DIRECTED RNA POLYMERASE63.170.6210
29 Mapoly0060s0048 [GO:0003743] translation initiation factor activity; [PF01253] Translation initiation factor SUI1; [GO:0006413] translational initiation; [PTHR12789] DENSITY-REGULATED PROTEIN HOMOLOG; [KOG3239] Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1)64.480.6526
30 Mapoly0043s0062 [GO:0003677] DNA binding; [GO:0006284] base-excision repair; [PTHR10359] A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III; [PF14815] NUDIX domain; [K03575] A/G-specific adenine glycosylase [EC:3.2.2.-]; [KOG1921] Endonuclease III; [PF00730] HhH-GPD superfamily base excision DNA repair protein; [PF00633] Helix-hairpin-helix motif; [3.2.2.-] Hydrolyzing N-glycosyl compounds.65.130.6463
31 Mapoly0083s0062 [K09553] stress-induced-phosphoprotein 1; [GO:0005515] protein binding; [PF13414] TPR repeat; [KOG0548] Molecular co-chaperone STI1; [PF00515] Tetratricopeptide repeat; [PTHR22904] TPR REPEAT CONTAINING PROTEIN65.240.6341
32 Mapoly0061s0091 [PTHR10229:SF1] GTP-BINDING PROTEIN HFLX; [PF01926] 50S ribosome-binding GTPase; [KOG0410] Predicted GTP binding protein; [PTHR10229] GTP-BINDING PROTEIN HFLX; [GO:0005525] GTP binding65.880.5517
33 Mapoly0133s0024 [K12871] coiled-coil domain-containing protein 12; [KOG3407] Uncharacterized conserved protein; [PF08315] cwf18 pre-mRNA splicing factor; [PTHR31551] FAMILY NOT NAMED65.880.6280
34 Mapoly0063s0035 -66.230.5626
35 Mapoly0004s0213 [PF03215] Rad17 cell cycle checkpoint protein; [GO:0005634] nucleus; [GO:0006281] DNA repair; [PTHR12172] CELL CYCLE CHECKPOINT PROTEIN RAD17; [KOG1970] Checkpoint RAD17-RFC complex, RAD17/RAD24 component; [PTHR12172:SF0] SUBFAMILY NOT NAMED; [K06662] cell cycle checkpoint protein; [GO:0007049] cell cycle68.260.6466
36 Mapoly0007s0163 [PTHR22055] 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN (PDGF-ASSOCIATED PROTEIN); [PF10252] Casein kinase substrate phosphoprotein PP28; [KOG3375] Phosphoprotein/predicted coiled-coil protein69.020.6678
37 Mapoly0123s0035 [PTHR14614] HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN; [PF10294] Putative methyltransferase; [KOG3201] Uncharacterized conserved protein69.740.5975
38 Mapoly0131s0021 [PTHR13119] FAMILY NOT NAMED; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [GO:0046872] metal ion binding70.580.5862
39 Mapoly0051s0067 [PF00651] BTB/POZ domain; [PTHR24411] FAMILY NOT NAMED; [PF00917] MATH domain; [GO:0005515] protein binding; [KOG1987] Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains73.530.6307
40 Mapoly0009s0066 [GO:0005515] protein binding; [KOG2699] Predicted ubiquitin regulatory protein; [PF09409] PUB domain; [PF00627] UBA/TS-N domain; [PTHR13020] UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAINING75.110.6051
41 Mapoly0073s0077 [PF07719] Tetratricopeptide repeat; [KOG1174] Anaphase-promoting complex (APC), subunit 7; [GO:0005515] protein binding; [PF13181] Tetratricopeptide repeat; [PTHR12558:SF8] ANAPHASE PROMOTING COMPLEX SUBUNIT 7; [PTHR12558] CELL DIVISION CYCLE 16,23,2776.840.6007
42 Mapoly0045s0049 -77.350.6341
43 Mapoly0069s0077 [PTHR11736:SF14] MAGE-RELATED; [PTHR11736] MELANOMA-ASSOCIATED ANTIGEN (MAGE ANTIGEN); [PF01454] MAGE family; [KOG4562] Uncharacterized conserved protein (tumor-rejection antigen MAGE in humans)79.670.6156
44 Mapoly0031s0039 [GO:0003677] DNA binding; [PTHR13408] DNA-DIRECTED RNA POLYMERASE III; [PF05132] RNA polymerase III RPC4; [PTHR13408:SF0] SUBFAMILY NOT NAMED; [GO:0005666] DNA-directed RNA polymerase III complex; [GO:0003899] DNA-directed RNA polymerase activity; [GO:0006383] transcription from RNA polymerase III promoter79.810.6028
45 Mapoly0006s0051 [PF13917] Zinc knuckle; [KOG2985] Uncharacterized conserved protein; [PTHR31437] FAMILY NOT NAMED80.220.6084
46 Mapoly0133s0014 [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN84.100.6020
47 Mapoly0004s0250 [GO:0005643] nuclear pore; [PF07817] GLE1-like protein; [GO:0016973] poly(A)+ mRNA export from nucleus; [KOG2412] Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor; [PTHR12960:SF0] SUBFAMILY NOT NAMED; [PTHR12960] GLE-1-RELATED87.770.6402
48 Mapoly0026s0057 [PTHR23417] 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE; [PF02390] Putative methyltransferase; [GO:0008176] tRNA (guanine-N7-)-methyltransferase activity; [K03439] tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]; [2.1.1.33] tRNA (guanine(46)-N(7))-methyltransferase.; [KOG3115] Methyltransferase-like protein; [GO:0006400] tRNA modification87.860.6216
49 Mapoly0117s0005 [K13109] IK cytokine; [PTHR12765] RED PROTEIN (IK FACTOR) (CYTOKINE IK); [KOG2498] IK cytokine down-regulator of HLA class II; [PF07807] RED-like protein C-terminal region; [PTHR12765:SF5] RED PROTEIN (IK FACTOR) (CYTOKINE IK); [GO:0005634] nucleus; [PF07808] RED-like protein N-terminal region92.000.6414
50 Mapoly0043s0090 [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [6.1.1.22] Asparagine--tRNA ligase.; [KOG0554] Asparaginyl-tRNA synthetase (mitochondrial); [K01893] asparaginyl-tRNA synthetase [EC:6.1.1.22]; [GO:0003676] nucleic acid binding; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N)93.280.6236
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