Guide Gene

Gene ID
Mapoly0002s0007
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [GO:0009451] RNA modification; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase; [PTHR21600] RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B; [PF01479] S4 domain

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0002s0007 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [GO:0009451] RNA modification; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase; [PTHR21600] RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B; [PF01479] S4 domain 0.00 1.0000
1 Mapoly0031s0052 -1.000.7873
2 Mapoly0001s0065 [GO:0019867] outer membrane; [PF07244] Surface antigen variable number repeat; [PF01103] Surface antigen; [PTHR12815] SORTING AND ASSEMBLY MACHINERY (SAM50) PROTEIN4.240.7853
3 Mapoly0133s0024 [K12871] coiled-coil domain-containing protein 12; [KOG3407] Uncharacterized conserved protein; [PF08315] cwf18 pre-mRNA splicing factor; [PTHR31551] FAMILY NOT NAMED9.800.7423
4 Mapoly0083s0034 -12.850.7554
5 Mapoly0001s0497 -13.270.7510
6 Mapoly0001s0238 [PF02978] Signal peptide binding domain; [GO:0048500] signal recognition particle; [PF00448] SRP54-type protein, GTPase domain; [GO:0008312] 7S RNA binding; [K03106] signal recognition particle subunit SRP54; [KOG0780] Signal recognition particle, subunit Srp54; [GO:0006614] SRP-dependent cotranslational protein targeting to membrane; [PF02881] SRP54-type protein, helical bundle domain; [GO:0005525] GTP binding; [PTHR11564:SF5] SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN; [PTHR11564] GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS20.200.7085
7 Mapoly0002s0035 -20.370.7497
8 Mapoly0067s0015 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [GO:0005515] protein binding; [PF00856] SET domain; [PF09273] Rubisco LSMT substrate-binding20.490.7174
9 Mapoly0044s0136 [PF12171] Zinc-finger double-stranded RNA-binding; [K13104] zinc finger protein 830; [PTHR13278] UNCHARACTERIZED; [KOG3032] Uncharacterized conserved protein21.210.6684
10 Mapoly0056s0020 [PF04548] AIG1 family; [PTHR10903] GTPASE, IMAP FAMILY MEMBER-RELATED; [GO:0005525] GTP binding23.020.7380
11 Mapoly0071s0016 [PF00183] Hsp90 protein; [GO:0005524] ATP binding; [GO:0006950] response to stress; [PTHR11528:SF41] SUBFAMILY NOT NAMED; [GO:0006457] protein folding; [PF13589] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [PTHR11528] HEAT SHOCK PROTEIN 90; [KOG0019] Molecular chaperone (HSP90 family); [GO:0051082] unfolded protein binding27.820.7040
12 Mapoly0030s0106 [GO:0031072] heat shock protein binding; [KOG0715] Molecular chaperone (DnaJ superfamily); [PF00226] DnaJ domain; [PF01556] DnaJ C terminal domain; [PTHR24076] FAMILY NOT NAMED; [PF00684] DnaJ central domain; [GO:0051082] unfolded protein binding29.700.7453
13 Mapoly0004s0122 [PF07498] Rho termination factor, N-terminal domain; [GO:0006353] DNA-dependent transcription, termination31.750.7487
14 Mapoly0039s0001 -33.050.7247
15 Mapoly0011s0137 [K03504] DNA polymerase delta subunit 3; [GO:0006260] DNA replication; [PTHR17598] FAMILY NOT NAMED; [PF09507] DNA polymerase subunit Cdc27; [GO:0005634] nucleus37.230.7378
16 Mapoly0045s0080 [GO:0004659] prenyltransferase activity; [GO:0016021] integral to membrane; [2.5.1.62] Chlorophyll synthase.; [PTHR11048] PRENYLTRANSFERASES; [PF01040] UbiA prenyltransferase family; [K04040] chlorophyll synthase [EC:2.5.1.62]; [KOG1381] Para-hydroxybenzoate-polyprenyl transferase39.120.7399
17 Mapoly0005s0203 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PF00313] 'Cold-shock' DNA-binding domain; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [PTHR11544] COLD SHOCK DOMAIN CONTAINING PROTEINS; [K09250] cellular nucleic acid-binding protein; [GO:0003676] nucleic acid binding; [KOG3070] Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing39.650.7313
18 Mapoly0069s0029 [PTHR10795:SF157] UNCHARACTERIZED; [KOG1114] Tripeptidyl peptidase II; [K01280] tripeptidyl-peptidase II [EC:3.4.14.10]; [GO:0004252] serine-type endopeptidase activity; [3.4.14.10] Tripeptidyl-peptidase II.; [PF00082] Subtilase family; [PF12580] Tripeptidyl peptidase II; [GO:0006508] proteolysis; [PTHR10795] PROPROTEIN CONVERTASE SUBTILISIN/KEXIN40.000.7029
19 Mapoly0063s0035 -40.500.6028
20 Mapoly0004s0058 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PTHR13215:SF4] SUBFAMILY NOT NAMED; [PF08766] DEK C terminal domain; [PF02229] Transcriptional Coactivator p15 (PC4); [KOG2712] Transcriptional coactivator; [PTHR13215] RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR; [GO:0003713] transcription coactivator activity42.900.6983
21 Mapoly0042s0007 [GO:0003677] DNA binding; [K02213] cell division control protein 6; [KOG2227] Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase; [PF13401] AAA domain; [PF01429] Methyl-CpG binding domain; [GO:0005634] nucleus; [PF09079] CDC6, C terminal; [PTHR10763] CELL DIVISION CONTROL PROTEIN 6-RELATED44.110.7241
22 Mapoly0049s0045 [PF13301] Protein of unknown function (DUF4079)49.480.6485
23 Mapoly0005s0125 [PF05383] La domain; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [PF08777] RNA binding motif; [K11090] lupus La protein; [KOG4213] RNA-binding protein La; [PTHR22792] LUPUS LA PROTEIN-RELATED55.230.6967
24 Mapoly0002s0238 [GO:0003847] 1-alkyl-2-acetylglycerophosphocholine esterase activity; [GO:0016042] lipid catabolic process; [3.1.1.47] 1-alkyl-2-acetylglycerophosphocholine esterase.; [K01062] 1-alkyl-2-acetylglycerophosphocholine esterase [EC:3.1.1.47]; [PTHR10272] PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE; [PF03403] Platelet-activating factor acetylhydrolase, isoform II; [KOG3847] Phospholipase A2 (platelet-activating factor acetylhydrolase in humans)55.320.5721
25 Mapoly0043s0090 [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [6.1.1.22] Asparagine--tRNA ligase.; [KOG0554] Asparaginyl-tRNA synthetase (mitochondrial); [K01893] asparaginyl-tRNA synthetase [EC:6.1.1.22]; [GO:0003676] nucleic acid binding; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N)57.050.6858
26 Mapoly0047s0069 [GO:0005524] ATP binding; [GO:0044267] cellular protein metabolic process; [PTHR11353] CHAPERONIN; [PF00118] TCP-1/cpn60 chaperonin family; [KOG0358] Chaperonin complex component, TCP-1 delta subunit (CCT4)58.400.6991
27 Mapoly0046s0087 [GO:0005524] ATP binding; [KOG1187] Serine/threonine protein kinase; [PTHR24420:SF145] SUBFAMILY NOT NAMED; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE59.900.6440
28 Mapoly0038s0048 [GO:0005737] cytoplasm; [PF08597] Translation initiation factor eIF3 subunit; [GO:0003743] translation initiation factor activity; [K03245] translation initiation factor eIF-3 subunit 1; [PTHR21681] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1; [GO:0005852] eukaryotic translation initiation factor 3 complex; [KOG4813] Translation initiation factor eIF3, p35 subunit60.760.6466
29 Mapoly0015s0164 [GO:0003677] DNA binding; [PF02362] B3 DNA binding domain; [PTHR31391] FAMILY NOT NAMED60.790.7021
30 Mapoly0038s0098 [K03351] anaphase-promoting complex subunit 4; [PF12896] Anaphase-promoting complex, cyclosome, subunit 4; [KOG4640] Anaphase-promoting complex (APC), subunit 4; [GO:0030071] regulation of mitotic metaphase/anaphase transition; [PF12894] Anaphase-promoting complex subunit 4 WD40 domain; [PTHR13260] ANAPHASE PROMOTING COMPLEX SUBUNIT 4 (APC4) (CYCLOSOME SUBUNIT 4); [GO:0005680] anaphase-promoting complex; [GO:0031145] anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process61.510.6742
31 Mapoly0033s0016 [PTHR30523:SF0] PHOSPHOENOLPYRUVATE CARBOXYLASE; [GO:0006099] tricarboxylic acid cycle; [PTHR30523] PHOSPHOENOLPYRUVATE CARBOXYLASE; [PF00311] Phosphoenolpyruvate carboxylase; [GO:0008964] phosphoenolpyruvate carboxylase activity; [4.1.1.31] Phosphoenolpyruvate carboxylase.; [GO:0015977] carbon fixation; [K01595] phosphoenolpyruvate carboxylase [EC:4.1.1.31]62.210.6860
32 Mapoly0084s0045 [PF07719] Tetratricopeptide repeat; [KOG1211] Amidases; [PF13414] TPR repeat; [PTHR11895] AMIDASE; [GO:0016884] carbon-nitrogen ligase activity, with glutamine as amido-N-donor; [PTHR11895:SF6] AMIDASE; [PF01425] Amidase64.580.6713
33 Mapoly0056s0016 [PTHR11359] AMP DEAMINASE; [PF00962] Adenosine/AMP deaminase; [GO:0032264] IMP salvage; [K01490] AMP deaminase [EC:3.5.4.6]; [GO:0019239] deaminase activity; [GO:0003876] AMP deaminase activity; [3.5.4.6] AMP deaminase.; [KOG1096] Adenosine monophosphate deaminase66.360.6756
34 Mapoly0083s0001 [GO:0008168] methyltransferase activity; [PF05891] AdoMet dependent proline di-methyltransferase; [PTHR12753] AD-003 - RELATED66.850.6722
35 Mapoly0014s0006 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [KOG0752] Mitochondrial solute carrier protein67.080.5597
36 Mapoly0029s0092 [GO:0006561] proline biosynthetic process; [PF03807] NADP oxidoreductase coenzyme F420-dependent; [K00286] pyrroline-5-carboxylate reductase [EC:1.5.1.2]; [GO:0055114] oxidation-reduction process; [GO:0004735] pyrroline-5-carboxylate reductase activity; [KOG3124] Pyrroline-5-carboxylate reductase; [1.5.1.2] Pyrroline-5-carboxylate reductase.; [PTHR11645] PYRROLINE-5-CARBOXYLATE REDUCTASE; [PF14748] Pyrroline-5-carboxylate reductase dimerisation69.170.7128
37 Mapoly0001s0191 [GO:0005524] ATP binding; [GO:0016021] integral to membrane; [PF00664] ABC transporter transmembrane region; [KOG0058] Peptide exporter, ABC superfamily; [GO:0016887] ATPase activity; [GO:0006810] transport; [GO:0055085] transmembrane transport; [GO:0042626] ATPase activity, coupled to transmembrane movement of substances; [PTHR24221] FAMILY NOT NAMED; [PF00005] ABC transporter71.130.6236
38 Mapoly0033s0031 [GO:0005524] ATP binding; [GO:0050515] 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity; [PTHR20861] HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE; [PF00288] GHMP kinases N terminal domain; [PTHR20861:SF2] 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE; [2.7.1.148] 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase.; [GO:0016114] terpenoid biosynthetic process; [K00919] 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]72.730.6665
39 Mapoly0091s0060 -75.910.6617
40 Mapoly0013s0048 [KOG0381] HMG box-containing protein; [PF00505] HMG (high mobility group) box; [PTHR13711] SWI/SNF-RELATED CHROMATIN BINDING PROTEIN77.490.7035
41 Mapoly0133s0052 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [K08851] TP53 regulating kinase [EC:2.7.11.1]; [PTHR12209] O-SIALOGLYCOPROTEIN ENDOPEPTIDASE; [GO:0006468] protein phosphorylation; [KOG3087] Serine/threonine protein kinase; [GO:0004674] protein serine/threonine kinase activity78.500.6940
42 Mapoly0061s0132 [PF00225] Kinesin motor domain; [GO:0005524] ATP binding; [PTHR24115] FAMILY NOT NAMED; [GO:0005871] kinesin complex; [GO:0007018] microtubule-based movement; [GO:0008017] microtubule binding; [GO:0003777] microtubule motor activity; [KOG0246] Kinesin-like protein; [K10393] kinesin family member 2/2478.780.6544
43 Mapoly0034s0012 [GO:0003723] RNA binding; [GO:0005737] cytoplasm; [GO:0003743] translation initiation factor activity; [KOG1669] Predicted mRNA cap-binding protein related to eIF-4E; [K03259] translation initiation factor eIF-4E; [PF01652] Eukaryotic initiation factor 4E; [GO:0006413] translational initiation; [PTHR11960] EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED81.390.6768
44 Mapoly0011s0194 [PF02897] Prolyl oligopeptidase, N-terminal beta-propeller domain; [GO:0008236] serine-type peptidase activity; [PTHR11757:SF3] OLIGOPEPTIDASE B (LYSYL AND ARGININYL OLIGOPEPTIDASE); [3.4.21.83] Oligopeptidase B.; [GO:0070008] serine-type exopeptidase activity; [K01354] oligopeptidase B [EC:3.4.21.83]; [GO:0004252] serine-type endopeptidase activity; [GO:0006508] proteolysis; [PTHR11757] PROTEASE FAMILY S9A OLIGOPEPTIDASE; [PF00326] Prolyl oligopeptidase family; [KOG2237] Predicted serine protease82.850.6486
45 Mapoly0013s0201 [PTHR23269:SF0] SUBFAMILY NOT NAMED; [KOG0128] RNA-binding protein SART3 (RRM superfamily); [PF05391] Lsm interaction motif; [GO:0003676] nucleic acid binding; [PTHR23269] RIBONUCLEOPROTEIN-RELATED; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)84.470.6840
46 Mapoly0112s0033 [KOG0978] E3 ubiquitin ligase involved in syntaxin degradation; [PTHR13140] MYOSIN85.700.6243
47 Mapoly0009s0136 [PTHR24012] FAMILY NOT NAMED; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)86.170.6828
48 Mapoly0007s0079 [KOG1308] Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein; [PTHR22904] TPR REPEAT CONTAINING PROTEIN86.390.6969
49 Mapoly0119s0016 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [GO:0006260] DNA replication; [PF00493] MCM2/3/5 family; [GO:0042555] MCM complex; [KOG0480] DNA replication licensing factor, MCM6 component; [GO:0005634] nucleus; [GO:0006270] DNA replication initiation; [PTHR11630:SF43] DNA REPLICATION LICENSING FACTOR MCM6; [K02542] minichromosome maintenance protein 6; [PTHR11630] DNA REPLICATION LICENSING FACTOR; [GO:0003678] DNA helicase activity; [PF14551] MCM N-terminal domain91.390.6900
50 Mapoly0016s0043 [2.7.2.4] Aspartate kinase.; [PF00742] Homoserine dehydrogenase; [GO:0016597] amino acid binding; [PTHR21499] ASPARTATE KINASE; [PF01842] ACT domain; [GO:0055114] oxidation-reduction process; [GO:0016491] oxidoreductase activity; [PF00696] Amino acid kinase family; [GO:0008152] metabolic process; [GO:0006520] cellular amino acid metabolic process; [K12524] bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]; [KOG0455] Homoserine dehydrogenase; [GO:0050661] NADP binding; [PF03447] Homoserine dehydrogenase, NAD binding domain; [1.1.1.3] Homoserine dehydrogenase.93.470.6606
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