Guide Gene

Gene ID
Mapoly0031s0039
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003677] DNA binding; [PTHR13408] DNA-DIRECTED RNA POLYMERASE III; [PF05132] RNA polymerase III RPC4; [PTHR13408:SF0] SUBFAMILY NOT NAMED; [GO:0005666] DNA-directed RNA polymerase III complex; [GO:0003899] DNA-directed RNA polymerase activity; [GO:0006383] transcription from RNA polymerase III promoter

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0031s0039 [GO:0003677] DNA binding; [PTHR13408] DNA-DIRECTED RNA POLYMERASE III; [PF05132] RNA polymerase III RPC4; [PTHR13408:SF0] SUBFAMILY NOT NAMED; [GO:0005666] DNA-directed RNA polymerase III complex; [GO:0003899] DNA-directed RNA polymerase activity; [GO:0006383] transcription from RNA polymerase III promoter 0.00 1.0000
1 Mapoly0002s0233 [GO:0008168] methyltransferase activity; [KOG2899] Predicted methyltransferase; [PF06859] Bicoid-interacting protein 3 (Bin3); [PTHR12315:SF0] SUBFAMILY NOT NAMED; [PTHR12315] BICOID-INTERACTING PROTEIN RELATED1.730.7793
2 Mapoly0014s0202 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [PF01926] 50S ribosome-binding GTPase; [PTHR11089:SF3] GTP-BINDING PROTEIN-RELATED PLANT/BACTERIA; [K13427] nitric-oxide synthase, plant [EC:1.14.13.39]; [1.14.13.39] Nitric-oxide synthase (NADPH dependent).; [GO:0005525] GTP binding4.240.7253
3 Mapoly0006s0051 [PF13917] Zinc knuckle; [KOG2985] Uncharacterized conserved protein; [PTHR31437] FAMILY NOT NAMED8.060.7116
4 Mapoly0015s0022 [GO:0005634] nucleus; [PTHR12722] XAP-5 PROTEIN-RELATED; [PF04921] XAP5, circadian clock regulator; [K13119] protein FAM50; [KOG2894] Uncharacterized conserved protein XAP-58.490.7543
5 Mapoly0130s0032 [K12592] exosome complex protein LRP1; [PTHR15341] SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR; [PF04000] Sas10/Utp3/C1D family; [KOG4835] DNA-binding protein C1D involved in regulation of double-strand break repair8.490.6970
6 Mapoly0003s0305 [PF13481] AAA domain; [PF13662] Toprim domain; [GO:0003697] single-stranded DNA binding; [PTHR12873] T7-LIKE MITOCHONDRIAL DNA HELICASE; [KOG2373] Predicted mitochondrial DNA helicase twinkle; [GO:0043139] 5'-3' DNA helicase activity12.170.7218
7 Mapoly0013s0140 [K13107] RNA-binding motif protein, X-linked 2; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [PTHR23139] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)13.860.6928
8 Mapoly0004s0034 [PTHR21738:SF0] SUBFAMILY NOT NAMED; [PTHR21738] UNCHARACTERIZED; [KOG3190] Uncharacterized conserved protein; [PF06102] Domain of unknown function (DUF947)16.880.6814
9 Mapoly0013s0135 [KOG4282] Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain; [PF13837] Myb/SANT-like DNA-binding domain23.470.6797
10 Mapoly0045s0049 -24.700.6945
11 Mapoly0069s0077 [PTHR11736:SF14] MAGE-RELATED; [PTHR11736] MELANOMA-ASSOCIATED ANTIGEN (MAGE ANTIGEN); [PF01454] MAGE family; [KOG4562] Uncharacterized conserved protein (tumor-rejection antigen MAGE in humans)25.100.6805
12 Mapoly0013s0192 [PF05477] Surfeit locus protein 2 (SURF2); [PTHR32175] FAMILY NOT NAMED25.920.6494
13 Mapoly0071s0060 -27.930.6874
14 Mapoly0170s0019 [PF07719] Tetratricopeptide repeat; [PTHR22767:SF3] PEPTIDE ALPHA-N-ACETYLTRANSFERASE-RELATED; [KOG2053] Mitochondrial inheritance and actin cytoskeleton organization protein; [PF09797] N-acetyltransferase B complex (NatB) non catalytic subunit; [PTHR22767] N-TERMINAL ACETLYTRANSFERASE-RELATED28.250.7014
15 Mapoly0012s0210 [PTHR13486:SF2] SUBFAMILY NOT NAMED; [KOG3345] Uncharacterized conserved protein; [PF07052] Hepatocellular carcinoma-associated antigen 59; [PTHR13486] FAMILY NOT NAMED30.200.7023
16 Mapoly0207s0010 -30.740.6948
17 Mapoly0001s0516 [KOG2428] Uncharacterized conserved protein; [PF04004] Leo1-like protein; [PTHR23146] LEO1 PROTEIN; [PTHR23146:SF0] SUBFAMILY NOT NAMED33.750.6807
18 Mapoly0116s0041 [PF13297] Telomere stability C-terminal; [PTHR12786:SF2] SPLICING FACTOR 3A; [PF12108] Splicing factor SF3a60 binding domain; [KOG2636] Splicing factor 3a, subunit 3; [PTHR12786] SPLICING FACTOR SF3A-RELATED; [K12827] splicing factor 3A subunit 3; [PF11931] Domain of unknown function (DUF3449)53.680.6939
19 Mapoly0060s0063 -54.300.6756
20 Mapoly0039s0062 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold55.450.6720
21 Mapoly0167s0009 [GO:0005524] ATP binding; [KOG0348] ATP-dependent RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031:SF89] ATP-INDEPENDENT RNA HELICASE; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF13959] Domain of unknown function (DUF4217)55.520.6739
22 Mapoly0056s0030 [KOG1040] Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit); [PTHR12357] YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING; [PF04146] YT521-B-like domain; [PTHR12357:SF3] SPLICING FACTOR YT521-B60.820.6560
23 Mapoly0158s0003 [PF13921] Myb-like DNA-binding domain63.500.6347
24 Mapoly0001s0132 [PTHR14211] GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2; [PF07767] Nop53 (60S ribosomal biogenesis); [KOG2823] Cellular protein (glioma tumor suppressor candidate region gene 2)66.680.6461
25 Mapoly0092s0013 [GO:0003723] RNA binding; [PTHR13326] TRNA PSEUDOURIDINE SYNTHASE D; [GO:0001522] pseudouridine synthesis; [GO:0009451] RNA modification; [PF01142] tRNA pseudouridine synthase D (TruD); [GO:0009982] pseudouridine synthase activity; [KOG2339] Uncharacterized conserved protein68.030.6635
26 Mapoly0010s0036 [KOG2002] TPR-containing nuclear phosphoprotein that regulates K(+) uptake; [PF07719] Tetratricopeptide repeat; [PTHR14027:SF2] TPR REPEAT NUCLEAR PHOSPHOPROTEIN; [GO:0005515] protein binding; [PF13414] TPR repeat; [PF13174] Tetratricopeptide repeat; [PF13181] Tetratricopeptide repeat; [PF13424] Tetratricopeptide repeat; [PTHR14027] TPR REPEAT NUCLEAR PHOSPHOPROTEIN/CTR9; [PF00515] Tetratricopeptide repeat69.200.6854
27 Mapoly0054s0054 [KOG3276] Uncharacterized conserved protein, contains YggU domain; [PTHR13420:SF1] gb def: y66d12a.8.p [caenorhabditis elegans]; [K09131] hypothetical protein; [PTHR13420] UNCHARACTERIZED; [PF02594] Uncharacterised ACR, YggU family COG187270.820.5781
28 Mapoly0133s0014 [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN71.830.6187
29 Mapoly0068s0080 [PF07719] Tetratricopeptide repeat; [KOG0543] FKBP-type peptidyl-prolyl cis-trans isomerase; [PTHR10516] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF13414] TPR repeat; [GO:0006457] protein folding; [PF00254] FKBP-type peptidyl-prolyl cis-trans isomerase76.940.5750
30 Mapoly0001s0195 [GO:0070985] TFIIK complex; [GO:0006355] regulation of transcription, DNA-dependent; [GO:0016538] cyclin-dependent protein serine/threonine kinase regulator activity; [GO:0019901] protein kinase binding; [PTHR10026:SF8] CYCLIN H; [PF00134] Cyclin, N-terminal domain; [PTHR10026] CYCLIN; [KOG2496] Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit; [GO:0006351] transcription, DNA-dependent; [GO:0000079] regulation of cyclin-dependent protein serine/threonine kinase activity77.050.6305
31 Mapoly0051s0020 [PTHR12785:SF6] SUBFAMILY NOT NAMED; [K12829] splicing factor 3B subunit 2; [GO:0005634] nucleus; [PF04046] PSP; [KOG2330] Splicing factor 3b, subunit 2; [PTHR12785] FAMILY NOT NAMED; [PF04037] Domain of unknown function (DUF382)77.330.6775
32 Mapoly0209s0009 [PF04266] ASCH domain77.330.6336
33 Mapoly0027s0149 [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031:SF2] SUBFAMILY NOT NAMED; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF13959] Domain of unknown function (DUF4217); [KOG0345] ATP-dependent RNA helicase78.130.6544
34 Mapoly0009s0102 [PTHR11567] ACID PHOSPHATASE-RELATED; [K13121] protein FRA10AC1; [PTHR11567:SF25] FRA10AC1 PROTEIN; [KOG1297] Uncharacterized conserved protein; [PF09725] Folate-sensitive fragile site protein Fra10Ac178.170.6190
35 Mapoly0024s0131 -78.990.6808
36 Mapoly0024s0108 [PF13371] Tetratricopeptide repeat; [PTHR23082] TRANSCRIPTION INITIATION FACTOR IIIC (TFIIIC), POLYPEPTIDE 3-RELATED; [GO:0005515] protein binding; [PF13414] TPR repeat; [PF13174] Tetratricopeptide repeat; [KOG2076] RNA polymerase III transcription factor TFIIIC79.370.6470
37 Mapoly0044s0136 [PF12171] Zinc-finger double-stranded RNA-binding; [K13104] zinc finger protein 830; [PTHR13278] UNCHARACTERIZED; [KOG3032] Uncharacterized conserved protein79.810.6028
38 Mapoly0021s0077 [GO:0005685] U1 snRNP; [GO:0006376] mRNA splice site selection; [PF03194] LUC7 N_terminus; [PTHR12375] RNA-BINDING PROTEIN LUC7-RELATED; [KOG0796] Spliceosome subunit; [GO:0003729] mRNA binding79.900.6723
39 Mapoly0004s0202 -84.500.6774
40 Mapoly0002s0209 [PF04413] 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); [K02527] 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.-.-.-]; [PTHR23417] 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE; [2.-.-.-] Transferases.84.710.5999
41 Mapoly0002s0019 [PF00919] Uncharacterized protein family UPF0004; [PF04055] Radical SAM superfamily; [GO:0051539] 4 iron, 4 sulfur cluster binding; [GO:0009451] RNA modification; [KOG4355] Predicted Fe-S oxidoreductase; [GO:0003824] catalytic activity; [GO:0051536] iron-sulfur cluster binding; [PTHR11918:SF45] UNCHARACTERIZED; [PTHR11918] RADICAL SAM PROTEINS; [PF01938] TRAM domain85.060.5345
42 Mapoly0069s0028 [3.1.27.-] Endoribonucleases producing other than 5'-phosphomonoesters.; [PF07521] RNA-metabolising metallo-beta-lactamase; [PTHR11203] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; [PF11718] Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; [KOG1137] mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit); [PF00753] Metallo-beta-lactamase superfamily; [K14403] cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]; [PF10996] Beta-Casp domain; [PTHR11203:SF32] UNCHARACTERIZED91.850.6260
43 Mapoly0019s0115 [PTHR23002] ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN; [PF14392] Zinc knuckle; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [GO:0003676] nucleic acid binding93.170.6450
44 Mapoly0006s0052 [GO:0003723] RNA binding; [GO:0004523] ribonuclease H activity; [PF01351] Ribonuclease HII; [PTHR10954] RIBONUCLEASE H2 SUBUNIT A; [K10743] ribonuclease H2 subunit A [EC:3.1.26.4]; [3.1.26.4] Ribonuclease H.; [PTHR10954:SF7] RIBONUCLEASE H2 SUBUNIT A; [KOG2299] Ribonuclease HI94.120.6391
45 Mapoly0004s0056 [PTHR23424] SERUM AMYLOID A94.280.6389
46 Mapoly0144s0001 [PF08312] cwf21 domain; [PTHR23140:SF0] SUBFAMILY NOT NAMED; [PTHR23140] RNA PROCESSING PROTEIN LD23810P98.490.6023
47 Mapoly0061s0104 [KOG3064] RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger; [PTHR23405:SF4] MAINTENANCE OF KILLER 16 (MAK16) PROTEIN; [PF01778] Ribosomal L28e protein family; [PF04874] Mak16 protein C-terminal region; [PTHR23405] MAINTENANCE OF KILLER 16 (MAK16) PROTEIN-RELATED99.950.6462
48 Mapoly0174s0023 [GO:0006396] RNA processing; [PTHR13734] TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER; [GO:0003723] RNA binding; [PF01743] Poly A polymerase head domain; [KOG2159] tRNA nucleotidyltransferase/poly(A) polymerase; [GO:0016779] nucleotidyltransferase activity; [PTHR13734:SF5] POLY(A) POLYMERASE101.240.6342
49 Mapoly0138s0022 [KOG2889] Predicted PRP38-like splicing factor; [PF03371] PRP38 family; [PTHR23142] UNCHARACTERIZED; [K12849] pre-mRNA-splicing factor 38A101.960.6379
50 Mapoly0074s0043 [GO:0005685] U1 snRNP; [GO:0006376] mRNA splice site selection; [PF03194] LUC7 N_terminus; [PTHR12375] RNA-BINDING PROTEIN LUC7-RELATED; [GO:0003729] mRNA binding102.740.6543
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