Guide Gene

Gene ID
Mapoly0187s0004
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[KOG0533] RRM motif-containing protein; [PTHR15241] TRANSFORMER-2-RELATED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0187s0004 [KOG0533] RRM motif-containing protein; [PTHR15241] TRANSFORMER-2-RELATED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.00 1.0000
1 Mapoly0008s0256 [PTHR12656] BRG-1 ASSOCIATED FACTOR 250 (BAF250)2.240.8416
2 Mapoly0098s0012 [PTHR23147] SERINE/ARGININE RICH SPLICING FACTOR; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)2.450.8302
3 Mapoly0005s0018 [KOG4508] Uncharacterized conserved protein; [PTHR15975] UNCHARACTERIZED; [PF10155] Uncharacterized conserved protein (DUF2363)3.460.8208
4 Mapoly0037s0072 [GO:0005515] protein binding; [PTHR21712] UNCHARACTERIZED; [PF00498] FHA domain6.320.7936
5 Mapoly0027s0023 -7.480.7964
6 Mapoly0006s0271 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [3.6.4.13] RNA helicase.; [K12823] ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding8.490.8012
7 Mapoly0035s0096 [PF01426] BAH domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PTHR12505] PHD FINGER TRANSCRIPTION FACTOR9.800.7974
8 Mapoly0001s0121 [PF00641] Zn-finger in Ran binding protein and others; [PTHR23238] RNA BINDING PROTEIN; [KOG1995] Conserved Zn-finger protein; [GO:0008270] zinc ion binding10.200.7877
9 Mapoly0011s0124 [PTHR12225] ADHESION REGULATING MOLECULE 1 (110 KDA CELL MEMBRANE GLYCOPROTEIN); [GO:0005737] cytoplasm; [GO:0005634] nucleus; [KOG3037] Cell membrane glycoprotein; [PF04683] Proteasome complex subunit Rpn13 ubiquitin receptor10.680.7295
10 Mapoly0035s0098 -10.950.7853
11 Mapoly0114s0034 [GO:0003723] RNA binding; [KOG1588] RNA-binding protein Sam68 and related KH domain proteins; [PF00013] KH domain; [PTHR11208] RNA-BINDING PROTEIN RELATED11.220.7877
12 Mapoly0014s0119 [GO:0006355] regulation of transcription, DNA-dependent; [K11308] histone acetyltransferase MYST1 [EC:2.3.1.48]; [PF11717] RNA binding activity-knot of a chromodomain; [PTHR10615] HISTONE ACETYLTRANSFERASE; [GO:0016747] transferase activity, transferring acyl groups other than amino-acyl groups; [GO:0005634] nucleus; [PF01853] MOZ/SAS family; [2.3.1.48] Histone acetyltransferase.; [KOG2747] Histone acetyltransferase (MYST family)11.830.7724
13 Mapoly0004s0253 [GO:0016020] membrane; [PTHR10896] GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE (BETA-1,3-GLUCURONYLTRANSFERASE); [PF03360] Glycosyltransferase family 43; [KOG1476] Beta-1,3-glucuronyltransferase B3GAT1/SQV-8; [GO:0015018] galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity12.410.7890
14 Mapoly0026s0023 [KOG3263] Nucleic acid binding protein; [PF08648] Protein of unknown function (DUF1777); [PTHR31077] FAMILY NOT NAMED; [K12846] U4/U6.U5 tri-snRNP-associated protein 315.910.7656
15 Mapoly0003s0175 [KOG1105] Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1; [PF07500] Transcription factor S-II (TFIIS), central domain; [GO:0008270] zinc ion binding; [PTHR11477] TRANSCRIPTION ELONGATION FACTOR S-II; [GO:0006351] transcription, DNA-dependent; [GO:0003676] nucleic acid binding; [K03145] transcription elongation factor S-II; [PF01096] Transcription factor S-II (TFIIS)16.430.7610
16 Mapoly0022s0014 [GO:0006355] regulation of transcription, DNA-dependent; [PF07818] HCNGP-like protein; [PTHR13464] TRANSCRIPTIONAL REGULATOR PROTEIN HCNGP16.430.7573
17 Mapoly0224s0005 [PTHR11711] ADP RIBOSYLATION FACTOR-RELATED; [PTHR11711:SF26] ADP-RIBOSYLATION FACTOR-LIKE 2, ARL2; [PF00025] ADP-ribosylation factor family; [K07943] ADP-ribosylation factor-like 2; [KOG0073] GTP-binding ADP-ribosylation factor-like protein ARL2; [GO:0005525] GTP binding16.430.7827
18 Mapoly0182s0013 [PF07719] Tetratricopeptide repeat; [PF13414] TPR repeat; [KOG2449] Methylmalonate semialdehyde dehydrogenase; [PTHR22904] TPR REPEAT CONTAINING PROTEIN16.970.7390
19 Mapoly0105s0008 [GO:0003677] DNA binding; [KOG1745] Histones H3 and H4; [GO:0000786] nucleosome; [K11253] histone H3; [PTHR11426] HISTONE H3; [PF00125] Core histone H2A/H2B/H3/H417.860.7597
20 Mapoly0038s0053 [PTHR23139] RNA-BINDING PROTEIN; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG0120] Splicing factor U2AF, large subunit (RRM superfamily); [GO:0003676] nucleic acid binding; [PTHR23139:SF9] SPLICING FACTOR U2AF LARGE SUBUNIT; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)18.330.7883
21 Mapoly0055s0119 [PF05148] Hypothetical methyltransferase; [KOG3045] Predicted RNA methylase involved in rRNA processing; [GO:0008168] methyltransferase activity; [PTHR12787:SF0] SUBFAMILY NOT NAMED; [PTHR12787] UNCHARACTERIZED20.780.7852
22 Mapoly0058s0003 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [PF04818] RNA polymerase II-binding domain.; [PTHR12323] SR-RELATED CTD ASSOCIATED FACTOR 6; [PF01805] Surp module20.780.7900
23 Mapoly0047s0022 [PF00782] Dual specificity phosphatase, catalytic domain; [K01104] protein-tyrosine phosphatase [EC:3.1.3.48]; [GO:0006470] protein dephosphorylation; [PTHR23339] TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE; [GO:0008138] protein tyrosine/serine/threonine phosphatase activity; [3.1.3.48] Protein-tyrosine-phosphatase.; [PTHR23339:SF25] DUAL SPECIFICITY PROTEIN PHOSPHATASE21.210.7892
24 Mapoly0032s0049 [KOG0144] RNA-binding protein CUGBP1/BRUNO (RRM superfamily); [GO:0003676] nucleic acid binding; [PTHR24622] FAMILY NOT NAMED; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)21.330.7977
25 Mapoly0011s0128 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family23.690.7846
26 Mapoly0013s0147 [KOG2361] Predicted methyltransferase; [PF13489] Methyltransferase domain; [PTHR22809] METHYLTRANSFERASE-RELATED25.420.7461
27 Mapoly0027s0068 [KOG4172] Predicted E3 ubiquitin ligase; [PF13920] Zinc finger, C3HC4 type (RING finger)26.500.7626
28 Mapoly0105s0006 [GO:0043565] sequence-specific DNA binding; [PF00808] Histone-like transcription factor (CBF/NF-Y) and archaeal histone; [PTHR11064] CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED; [GO:0005622] intracellular; [KOG0870] DNA polymerase epsilon, subunit D28.270.7391
29 Mapoly0158s0010 [KOG1375] Beta tubulin; [PF00091] Tubulin/FtsZ family, GTPase domain; [GO:0005874] microtubule; [K07375] tubulin beta; [PTHR11588] TUBULIN; [GO:0007017] microtubule-based process; [PF03953] Tubulin C-terminal domain; [GO:0006184] GTP catabolic process; [GO:0003924] GTPase activity; [GO:0051258] protein polymerization; [GO:0043234] protein complex; [GO:0005525] GTP binding28.530.7193
30 Mapoly0019s0153 [GO:0005524] ATP binding; [GO:0005674] transcription factor TFIIF complex; [PTHR10445:SF0] GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2; [KOG2905] Transcription initiation factor IIF, small subunit (RAP30); [3.6.4.12] DNA helicase.; [K03139] transcription initiation factor TFIIF subunit beta [EC:3.6.4.12]; [PF02270] Transcription initiation factor IIF, beta subunit; [GO:0006367] transcription initiation from RNA polymerase II promoter; [PTHR10445] GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 228.570.7217
31 Mapoly0024s0122 [PTHR30060] INNER MEMBRANE PROTEIN; [PF09745] Coiled-coil domain-containing protein 55 (DUF2040); [PTHR30060:SF0] INNER MEMBRANE PROTEIN28.860.6929
32 Mapoly0052s0020 [K03424] TatD DNase family protein [EC:3.1.21.-]; [GO:0016888] endodeoxyribonuclease activity, producing 5'-phosphomonoesters; [KOG3020] TatD-related DNase; [3.1.21.-] Endodeoxyribonucleases producing 5'-phosphomonoesters.; [PF01026] TatD related DNase; [PTHR10060] TATD FAMILY DEOXYRIBONUCLEASE28.980.7601
33 Mapoly0052s0047 [PF03556] Cullin binding; [PTHR12281] RP42 RELATED29.290.7456
34 Mapoly0054s0019 [PTHR16105:SF0] SUBFAMILY NOT NAMED; [PTHR16105] UNCHARACTERIZED; [GO:0003676] nucleic acid binding; [K13157] U11/U12 small nuclear ribonucleoprotein 65 kDa protein; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)30.500.7573
35 Mapoly0062s0098 [PF09229] Activator of Hsp90 ATPase, N-terminal; [GO:0051087] chaperone binding; [PTHR13009] HEAT SHOCK PROTEIN 90 (HSP90) CO-CHAPERONE AHA-1; [GO:0001671] ATPase activator activity32.250.7164
36 Mapoly0086s0048 [PTHR22936:SF17] RHOMBOID 1; [GO:0016021] integral to membrane; [GO:0004252] serine-type endopeptidase activity; [PF01694] Rhomboid family; [PTHR22936] RHOMBOID-RELATED; [GO:0006508] proteolysis34.480.7446
37 Mapoly0006s0154 -35.100.7401
38 Mapoly0061s0070 [K12847] U4/U6.U5 tri-snRNP-associated protein 2; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0008270] zinc ion binding; [PTHR24619] FAMILY NOT NAMED; [PF02148] Zn-finger in ubiquitin-hydrolases and other protein; [KOG2026] Spindle pole body protein - Sad1p36.730.7792
39 Mapoly0042s0051 [PF06694] Plant nuclear matrix protein 1 (NMP1); [PTHR14352] FAMILY NOT NAMED42.210.7220
40 Mapoly0019s0138 [GO:0030833] regulation of actin filament polymerization; [KOG2826] Actin-related protein Arp2/3 complex, subunit ARPC2; [PF04045] Arp2/3 complex, 34 kD subunit p34-Arc; [GO:0005856] cytoskeleton; [PTHR12058] ARP2/3 COMPLEX 34 KDA SUBUNIT; [K05758] actin related protein 2/3 complex, subunit 246.310.6761
41 Mapoly0070s0050 [GO:0004843] ubiquitin-specific protease activity; [PTHR10589] UBIQUITIN CARBOXYL-TERMINAL HYDROLASE; [K05610] ubiquitin carboxyl-terminal hydrolase L5 [EC:3.4.19.12]; [GO:0006511] ubiquitin-dependent protein catabolic process; [KOG2778] Ubiquitin C-terminal hydrolase; [GO:0005622] intracellular; [3.4.19.12] Ubiquitinyl hydrolase 1.; [PTHR10589:SF16] UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5; [PF01088] Ubiquitin carboxyl-terminal hydrolase, family 146.830.7415
42 Mapoly0003s0199 [KOG4723] Uncharacterized conserved protein; [PTHR16184] FAMILY NOT NAMED; [PF09807] Uncharacterized conserved protein (DUF2348)47.330.7525
43 Mapoly0168s0008 [PTHR24011:SF139] SUBFAMILY NOT NAMED; [KOG0131] Splicing factor 3b, subunit 4; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)47.840.7713
44 Mapoly0117s0022 [KOG3467] Histone H4; [GO:0003677] DNA binding; [PTHR10484] HISTONE H4; [K11254] histone H4; [PF00125] Core histone H2A/H2B/H3/H448.930.6949
45 Mapoly0135s0033 [PF07093] SGT1 protein; [KOG2406] MADS box transcription factor; [PTHR13060] SGT1 PROTEIN (HSGT1) (SUPPRESSOR OF GCR2)49.840.7312
46 Mapoly0095s0037 [PTHR14003:SF1] YY1-RELATED; [PF13465] Zinc-finger double domain; [PTHR14003] TRANSCRIPTIONAL REPRESSOR PROTEIN YY; [PF13894] C2H2-type zinc finger50.720.7139
47 Mapoly0003s0077 [PTHR15606:SF3] HSP40-RELATED; [KOG4188] Uncharacterized conserved protein; [PF00226] DnaJ domain; [PTHR15606] DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED; [PF12572] Protein of unknown function (DUF3752)53.150.6954
48 Mapoly0080s0056 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [GO:0006260] DNA replication; [PF00493] MCM2/3/5 family; [K10738] minichromosome maintenance protein 9; [PTHR11630:SF48] DNA REPLICATION LICENSING FACTOR MCM1; [PTHR11630] DNA REPLICATION LICENSING FACTOR; [KOG0477] DNA replication licensing factor, MCM2 component54.740.7157
49 Mapoly0001s0482 [PF05764] YL1 nuclear protein; [KOG2897] DNA-binding protein YL1 and related proteins; [GO:0006355] regulation of transcription, DNA-dependent; [PF08265] YL1 nuclear protein C-terminal domain; [K11664] vacuolar protein sorting-associated protein 72; [GO:0005634] nucleus; [PTHR13275] YL-1 PROTEIN (TRANSCRIPTION FACTOR-LIKE 1)55.230.7629
50 Mapoly0112s0059 [GO:0005524] ATP binding; [KOG0328] Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily; [PTHR24031:SF57] SUBFAMILY NOT NAMED; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [K13025] ATP-dependent RNA helicase [EC:3.6.4.13]; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding55.500.7302
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