Guide Gene
- Gene ID
- Mapoly0035s0096
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [PF01426] BAH domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PTHR12505] PHD FINGER TRANSCRIPTION FACTOR
Coexpressed Gene List
Search : Show :Showing 1 to 50 of 200 records
Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0035s0096 [PF01426] BAH domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PTHR12505] PHD FINGER TRANSCRIPTION FACTOR 0.00 1.0000 1 Mapoly0055s0119 [PF05148] Hypothetical methyltransferase; [KOG3045] Predicted RNA methylase involved in rRNA processing; [GO:0008168] methyltransferase activity; [PTHR12787:SF0] SUBFAMILY NOT NAMED; [PTHR12787] UNCHARACTERIZED 2.00 0.8475 2 Mapoly0008s0063 [PTHR10742] AMINE OXIDASE; [PF01593] Flavin containing amine oxidoreductase; [GO:0055114] oxidation-reduction process; [GO:0005515] protein binding; [PF04433] SWIRM domain; [GO:0016491] oxidoreductase activity; [K11450] lysine-specific histone demethylase 1 [EC:1.-.-.-]; [KOG0029] Amine oxidase; [1.-.-.-] Oxidoreductases. 2.24 0.8592 3 Mapoly0008s0256 [PTHR12656] BRG-1 ASSOCIATED FACTOR 250 (BAF250) 3.00 0.8460 4 Mapoly0007s0084 [GO:0006357] regulation of transcription from RNA polymerase II promoter; [PTHR13208] MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4; [PF10018] Vitamin-D-receptor interacting Mediator subunit 4; [GO:0016592] mediator complex; [GO:0001104] RNA polymerase II transcription cofactor activity; [PTHR13208:SF2] gb def: cg8609 gene product [drosophila melanogaster] 5.92 0.8453 5 Mapoly0061s0070 [K12847] U4/U6.U5 tri-snRNP-associated protein 2; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0008270] zinc ion binding; [PTHR24619] FAMILY NOT NAMED; [PF02148] Zn-finger in ubiquitin-hydrolases and other protein; [KOG2026] Spindle pole body protein - Sad1p 6.63 0.8458 6 Mapoly0187s0004 [KOG0533] RRM motif-containing protein; [PTHR15241] TRANSFORMER-2-RELATED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.80 0.7974 7 Mapoly0056s0071 [PTHR13507] UNCHARACTERIZED; [PF06658] Protein of unknown function (DUF1168) 13.96 0.8015 8 Mapoly0035s0095 [GO:0003677] DNA binding; [PF00538] linker histone H1 and H5 family; [GO:0000786] nucleosome; [GO:0005634] nucleus; [PTHR11467] HISTONE H1/H5; [GO:0006334] nucleosome assembly; [K11275] histone H1/5 14.70 0.7793 9 Mapoly0030s0047 [PF07572] Bucentaur or craniofacial development; [KOG4776] Uncharacterized conserved protein BCNT; [PTHR23227] BUCENTAUR RELATED 16.12 0.8181 10 Mapoly0066s0098 [GO:0006284] base-excision repair; [KOG2875] 8-oxoguanine DNA glycosylase; [GO:0006289] nucleotide-excision repair; [4.2.99.18] DNA-(apurinic or apyrimidinic site) lyase.; [PTHR10242] N-GLYCOSYLASE/DNA LYASE; [PF07934] 8-oxoguanine DNA glycosylase, N-terminal domain; [PF00730] HhH-GPD superfamily base excision DNA repair protein; [K03660] N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]; [GO:0003684] damaged DNA binding; [GO:0008534] oxidized purine nucleobase lesion DNA N-glycosylase activity; [3.2.2.-] Hydrolyzing N-glycosyl compounds. 17.55 0.8013 11 Mapoly0154s0004 [PTHR12999] FAMILY NOT NAMED; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17.94 0.8207 12 Mapoly0032s0049 [KOG0144] RNA-binding protein CUGBP1/BRUNO (RRM superfamily); [GO:0003676] nucleic acid binding; [PTHR24622] FAMILY NOT NAMED; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18.55 0.8204 13 Mapoly0019s0032 - 19.29 0.8126 14 Mapoly0001s0040 [PTHR12466:SF8] SUBFAMILY NOT NAMED; [PF05179] RNA pol II accessory factor, Cdc73 family; [KOG3786] RNA polymerase II assessory factor Cdc73p; [PTHR12466] CDC73 DOMAIN PROTEIN 20.35 0.8273 15 Mapoly0026s0023 [KOG3263] Nucleic acid binding protein; [PF08648] Protein of unknown function (DUF1777); [PTHR31077] FAMILY NOT NAMED; [K12846] U4/U6.U5 tri-snRNP-associated protein 3 24.80 0.7620 16 Mapoly0003s0303 [GO:0005515] protein binding; [KOG0305] Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits; [PTHR19918:SF7] gb def: SPCC1620.04c protein; [PTHR19918] CELL DIVISION CYCLE 20 (CDC20) (FIZZY)-RELATED; [K03364] cell division cycle 20-like protein 1, cofactor of APC complex; [PF00400] WD domain, G-beta repeat 26.15 0.7474 17 Mapoly0003s0175 [KOG1105] Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1; [PF07500] Transcription factor S-II (TFIIS), central domain; [GO:0008270] zinc ion binding; [PTHR11477] TRANSCRIPTION ELONGATION FACTOR S-II; [GO:0006351] transcription, DNA-dependent; [GO:0003676] nucleic acid binding; [K03145] transcription elongation factor S-II; [PF01096] Transcription factor S-II (TFIIS) 26.55 0.7537 18 Mapoly0122s0055 [GO:0031625] ubiquitin protein ligase binding; [PTHR11932:SF5] ANAPHASE-PROMOTING COMPLEX SUBUNIT 2; [GO:0031461] cullin-RING ubiquitin ligase complex; [GO:0006511] ubiquitin-dependent protein catabolic process; [K03349] anaphase-promoting complex subunit 2; [KOG2165] Anaphase-promoting complex (APC), subunit 2; [PTHR11932] CULLIN; [PF00888] Cullin family; [PF08672] Anaphase promoting complex (APC) subunit 2 27.17 0.8200 19 Mapoly0066s0029 [PTHR12707] PINN; [K13114] pinin; [KOG3756] Pinin (desmosome-associated protein); [PF04696] pinin/SDK/memA/ protein conserved region 28.72 0.8006 20 Mapoly0041s0104 [PTHR31307] FAMILY NOT NAMED; [PF13837] Myb/SANT-like DNA-binding domain 28.98 0.7711 21 Mapoly0042s0051 [PF06694] Plant nuclear matrix protein 1 (NMP1); [PTHR14352] FAMILY NOT NAMED 29.93 0.7432 22 Mapoly0088s0017 [PF13934] Nuclear pore complex assembly; [PTHR10044] INHIBITOR OF APOPTOSIS; [PF13920] Zinc finger, C3HC4 type (RING finger) 38.68 0.7838 23 Mapoly0075s0060 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR15725] ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING; [GO:0046872] metal ion binding 42.85 0.7959 24 Mapoly0107s0026 [GO:0003723] RNA binding; [GO:0005737] cytoplasm; [K12839] survival of motor neuron-related-splicing factor 30; [GO:0006397] mRNA processing; [KOG3026] Splicing factor SPF30; [GO:0005634] nucleus; [PF06003] Survival motor neuron protein (SMN); [PTHR12664] SURVIVAL MOTOR NEURON PROTEIN 42.93 0.7885 25 Mapoly0071s0030 [PF03725] 3' exoribonuclease family, domain 2; [K12586] exosome complex component RRP43; [PTHR11097:SF9] EXOSOME COMPLEX EXONUCLEASE RRP43 (RIBOSOMAL RNA PROCESSING PROTEIN 43); [PTHR11097] EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN); [PF01138] 3' exoribonuclease family, domain 1; [KOG1613] Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 43.44 0.7972 26 Mapoly0064s0032 [GO:0005515] protein binding; [KOG1063] RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily; [PTHR13729] ELONGATOR COMPLEX PROTEIN 2 (STAT3-INTERACTING PROTEIN); [K11374] elongator complex protein 2; [PTHR13729:SF2] ELONGATOR COMPLEX PROTEIN 2 (STAT3-INTERACTING PROTEIN); [PF00400] WD domain, G-beta repeat 43.62 0.8136 27 Mapoly0046s0042 [KOG1605] TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation); [PF03031] NLI interacting factor-like phosphatase; [GO:0005515] protein binding; [PTHR12210] NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 45.23 0.7329 28 Mapoly0016s0042 [PTHR11142] PSEUDOURIDYLATE SYNTHASE; [GO:0003723] RNA binding; [K06173] tRNA pseudouridine synthase A [EC:5.4.99.12]; [GO:0001522] pseudouridine synthesis; [KOG4393] Predicted pseudouridylate synthase; [PTHR11142:SF1] PSEUDOURIDYLATE SYNTHASE-RELATED; [GO:0009451] RNA modification; [PF01416] tRNA pseudouridine synthase; [GO:0009982] pseudouridine synthase activity; [5.4.99.12] tRNA pseudouridine(38-40) synthase. 45.96 0.7799 29 Mapoly0160s0021 [PTHR11062] EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED; [KOG1021] Acetylglucosaminyltransferase EXT1/exostosin 1; [PF03016] Exostosin family 46.22 0.7338 30 Mapoly0028s0083 [3.1.2.15] Ubiquitin thiolesterase.; [KOG0944] Ubiquitin-specific protease UBP14; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [GO:0005515] protein binding; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0008270] zinc ion binding; [K11836] ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.1.2.15]; [PF00627] UBA/TS-N domain; [PTHR24006] FAMILY NOT NAMED; [PF02148] Zn-finger in ubiquitin-hydrolases and other protein 46.28 0.7446 31 Mapoly0058s0003 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [PF04818] RNA polymerase II-binding domain.; [PTHR12323] SR-RELATED CTD ASSOCIATED FACTOR 6; [PF01805] Surp module 46.58 0.7746 32 Mapoly0086s0009 [GO:0070461] SAGA-type complex; [PTHR21277] FAMILY NOT NAMED; [PF12767] Transcriptional regulator of RNA polII, SAGA, subunit 46.99 0.7815 33 Mapoly0004s0253 [GO:0016020] membrane; [PTHR10896] GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE (BETA-1,3-GLUCURONYLTRANSFERASE); [PF03360] Glycosyltransferase family 43; [KOG1476] Beta-1,3-glucuronyltransferase B3GAT1/SQV-8; [GO:0015018] galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity 49.50 0.7514 34 Mapoly0032s0042 [GO:0051297] centrosome organization; [PF14661] HAUS augmin-like complex subunit 6 N-terminus; [PTHR16151] UNCHARACTERIZED; [GO:0051225] spindle assembly; [GO:0070652] HAUS complex 51.50 0.7509 35 Mapoly0019s0080 [PTHR13798:SF2] gb def: RNA binding motif protein 11 (Fragment); [GO:0003676] nucleic acid binding; [PTHR13798] RNA BINDING MOTIF(RBM)PROTEIN -RELATED; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52.08 0.7248 36 Mapoly0161s0009 [GO:0003723] RNA binding; [PTHR13452] THUMP DOMAIN CONTAINING PROTEIN 1-RELATED; [PF02926] THUMP domain 52.38 0.7772 37 Mapoly0061s0094 [GO:0005634] nucleus; [PTHR15217:SF0] SUBFAMILY NOT NAMED; [PTHR15217] WILMS' TUMOR 1-ASSOCIATING PROTEIN; [KOG2991] Splicing regulator; [GO:0048024] regulation of mRNA splicing, via spliceosome 55.50 0.7621 38 Mapoly0091s0021 [PTHR13135] CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26; [PF10258] PHAX RNA-binding domain; [KOG3948] Mediator of U snRNA nuclear export PHAX 58.75 0.7771 39 Mapoly0001s0482 [PF05764] YL1 nuclear protein; [KOG2897] DNA-binding protein YL1 and related proteins; [GO:0006355] regulation of transcription, DNA-dependent; [PF08265] YL1 nuclear protein C-terminal domain; [K11664] vacuolar protein sorting-associated protein 72; [GO:0005634] nucleus; [PTHR13275] YL-1 PROTEIN (TRANSCRIPTION FACTOR-LIKE 1) 60.89 0.7710 40 Mapoly0036s0127 [GO:0008168] methyltransferase activity; [PTHR12829] N6-ADENOSINE-METHYLTRANSFERASE; [PF05063] MT-A70; [GO:0006139] nucleobase-containing compound metabolic process 61.11 0.7548 41 Mapoly0038s0053 [PTHR23139] RNA-BINDING PROTEIN; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG0120] Splicing factor U2AF, large subunit (RRM superfamily); [GO:0003676] nucleic acid binding; [PTHR23139:SF9] SPLICING FACTOR U2AF LARGE SUBUNIT; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62.35 0.7530 42 Mapoly0005s0269 [PF13855] Leucine rich repeat; [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [KOG0192] Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs; [PTHR24359] SERINE/THREONINE-PROTEIN KINASE SBK1; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [PF00560] Leucine Rich Repeat; [GO:0006468] protein phosphorylation; [PF14381] Ethylene-responsive protein kinase Le-CTR1 64.50 0.7795 43 Mapoly0027s0023 - 64.65 0.7320 44 Mapoly0170s0020 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [GO:0005681] spliceosomal complex; [PTHR10887:SF5] INTRON-BINDING PROTEIN AQUARIUS; [PF13086] AAA domain; [GO:0000398] mRNA splicing, via spliceosome; [K12874] intron-binding protein aquarius; [PF13087] AAA domain; [KOG1806] DEAD box containing helicases 64.97 0.7849 45 Mapoly0011s0185 [KOG0919] C-5 cytosine-specific DNA methylase; [GO:0008168] methyltransferase activity; [PTHR10629] CYTOSINE-SPECIFIC METHYLTRANSFERASE; [K00558] DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]; [PF00145] C-5 cytosine-specific DNA methylase; [2.1.1.37] DNA (cytosine-5-)-methyltransferase. 65.57 0.7797 46 Mapoly0061s0123 [GO:0005515] protein binding; [PTHR19846] WD40 REPEAT PROTEIN; [KOG0272] U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats); [K12662] U4/U6 small nuclear ribonucleoprotein PRP4; [PF00400] WD domain, G-beta repeat; [PF08799] pre-mRNA processing factor 4 (PRP4) like 67.23 0.7882 47 Mapoly0147s0014 [PTHR14790] FAMILY NOT NAMED; [PF08585] Domain of unknown function (DUF1767) 68.48 0.7428 48 Mapoly0007s0209 [PF15275] PEHE domain; [GO:0005515] protein binding; [PF00439] Bromodomain; [PTHR22881] BROMODOMAIN CONTAINING PROTEIN 68.93 0.7728 49 Mapoly0167s0023 [GO:0000287] magnesium ion binding; [K10761] tRNA(His) guanylyltransferase [EC:2.7.7.-]; [PTHR12729:SF1] UNCHARACTERIZED; [PF04446] tRNAHis guanylyltransferase; [GO:0008193] tRNA guanylyltransferase activity; [PF14413] Thg1 C terminal domain; [2.7.7.-] Nucleotidyltransferases.; [PTHR12729] UNCHARACTERIZED; [GO:0006400] tRNA modification; [KOG2721] Uncharacterized conserved protein 69.35 0.7681 50 Mapoly0019s0153 [GO:0005524] ATP binding; [GO:0005674] transcription factor TFIIF complex; [PTHR10445:SF0] GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2; [KOG2905] Transcription initiation factor IIF, small subunit (RAP30); [3.6.4.12] DNA helicase.; [K03139] transcription initiation factor TFIIF subunit beta [EC:3.6.4.12]; [PF02270] Transcription initiation factor IIF, beta subunit; [GO:0006367] transcription initiation from RNA polymerase II promoter; [PTHR10445] GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 69.64 0.6989