Guide Gene

Gene ID
Mapoly0007s0084
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0006357] regulation of transcription from RNA polymerase II promoter; [PTHR13208] MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4; [PF10018] Vitamin-D-receptor interacting Mediator subunit 4; [GO:0016592] mediator complex; [GO:0001104] RNA polymerase II transcription cofactor activity; [PTHR13208:SF2] gb def: cg8609 gene product [drosophila melanogaster]

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0007s0084 [GO:0006357] regulation of transcription from RNA polymerase II promoter; [PTHR13208] MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4; [PF10018] Vitamin-D-receptor interacting Mediator subunit 4; [GO:0016592] mediator complex; [GO:0001104] RNA polymerase II transcription cofactor activity; [PTHR13208:SF2] gb def: cg8609 gene product [drosophila melanogaster] 0.00 1.0000
1 Mapoly0008s0063 [PTHR10742] AMINE OXIDASE; [PF01593] Flavin containing amine oxidoreductase; [GO:0055114] oxidation-reduction process; [GO:0005515] protein binding; [PF04433] SWIRM domain; [GO:0016491] oxidoreductase activity; [K11450] lysine-specific histone demethylase 1 [EC:1.-.-.-]; [KOG0029] Amine oxidase; [1.-.-.-] Oxidoreductases.1.000.8827
2 Mapoly0002s0247 -1.410.8599
3 Mapoly0008s0256 [PTHR12656] BRG-1 ASSOCIATED FACTOR 250 (BAF250)1.730.8591
4 Mapoly0090s0071 -5.290.8154
5 Mapoly0061s0070 [K12847] U4/U6.U5 tri-snRNP-associated protein 2; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0008270] zinc ion binding; [PTHR24619] FAMILY NOT NAMED; [PF02148] Zn-finger in ubiquitin-hydrolases and other protein; [KOG2026] Spindle pole body protein - Sad1p5.660.8584
6 Mapoly0141s0031 -5.660.8453
7 Mapoly0035s0096 [PF01426] BAH domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PTHR12505] PHD FINGER TRANSCRIPTION FACTOR5.920.8453
8 Mapoly0003s0303 [GO:0005515] protein binding; [KOG0305] Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits; [PTHR19918:SF7] gb def: SPCC1620.04c protein; [PTHR19918] CELL DIVISION CYCLE 20 (CDC20) (FIZZY)-RELATED; [K03364] cell division cycle 20-like protein 1, cofactor of APC complex; [PF00400] WD domain, G-beta repeat6.160.8042
9 Mapoly0016s0042 [PTHR11142] PSEUDOURIDYLATE SYNTHASE; [GO:0003723] RNA binding; [K06173] tRNA pseudouridine synthase A [EC:5.4.99.12]; [GO:0001522] pseudouridine synthesis; [KOG4393] Predicted pseudouridylate synthase; [PTHR11142:SF1] PSEUDOURIDYLATE SYNTHASE-RELATED; [GO:0009451] RNA modification; [PF01416] tRNA pseudouridine synthase; [GO:0009982] pseudouridine synthase activity; [5.4.99.12] tRNA pseudouridine(38-40) synthase.7.750.8531
10 Mapoly0097s0086 -11.220.8242
11 Mapoly0122s0055 [GO:0031625] ubiquitin protein ligase binding; [PTHR11932:SF5] ANAPHASE-PROMOTING COMPLEX SUBUNIT 2; [GO:0031461] cullin-RING ubiquitin ligase complex; [GO:0006511] ubiquitin-dependent protein catabolic process; [K03349] anaphase-promoting complex subunit 2; [KOG2165] Anaphase-promoting complex (APC), subunit 2; [PTHR11932] CULLIN; [PF00888] Cullin family; [PF08672] Anaphase promoting complex (APC) subunit 211.830.8565
12 Mapoly0161s0009 [GO:0003723] RNA binding; [PTHR13452] THUMP DOMAIN CONTAINING PROTEIN 1-RELATED; [PF02926] THUMP domain13.420.8396
13 Mapoly0002s0046 [PF07986] Tubulin binding cofactor C; [KOG2512] Beta-tubulin folding cofactor C; [PTHR15139] TUBULIN FOLDING COFACTOR C; [GO:0007023] post-chaperonin tubulin folding pathway15.100.8225
14 Mapoly0030s0047 [PF07572] Bucentaur or craniofacial development; [KOG4776] Uncharacterized conserved protein BCNT; [PTHR23227] BUCENTAUR RELATED15.490.8360
15 Mapoly0008s0195 [PTHR13304] GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN; [PF04114] Gaa1-like, GPI transamidase component; [GO:0016021] integral to membrane; [PTHR13304:SF0] SUBFAMILY NOT NAMED; [GO:0042765] GPI-anchor transamidase complex; [K05289] glycosylphosphatidylinositol transamidase; [KOG3566] Glycosylphosphatidylinositol anchor attachment protein GAA116.120.8351
16 Mapoly0035s0095 [GO:0003677] DNA binding; [PF00538] linker histone H1 and H5 family; [GO:0000786] nucleosome; [GO:0005634] nucleus; [PTHR11467] HISTONE H1/H5; [GO:0006334] nucleosome assembly; [K11275] histone H1/516.430.7930
17 Mapoly0002s0128 [GO:0016020] membrane; [PF00344] SecY translocase; [GO:0015031] protein transport; [PTHR10906] SECY/SEC61-ALPHA FAMILY MEMBER17.860.8365
18 Mapoly0055s0119 [PF05148] Hypothetical methyltransferase; [KOG3045] Predicted RNA methylase involved in rRNA processing; [GO:0008168] methyltransferase activity; [PTHR12787:SF0] SUBFAMILY NOT NAMED; [PTHR12787] UNCHARACTERIZED18.170.8115
19 Mapoly0214s0006 [PF06697] Protein of unknown function (DUF1191)18.380.8169
20 Mapoly0042s0046 [PF09496] Cenp-O kinetochore centromere component; [GO:0034508] centromere complex assembly; [PTHR14582] FAMILY NOT NAMED; [K11507] centromere protein O; [GO:0000776] kinetochore18.650.8142
21 Mapoly0030s0064 -19.440.7810
22 Mapoly0079s0001 [GO:0006506] GPI anchor biosynthetic process; [K05284] phosphatidylinositol glycan, class M [EC:2.4.1.-]; [GO:0016758] transferase activity, transferring hexosyl groups; [PF05007] Mannosyltransferase (PIG-M); [GO:0016021] integral to membrane; [PTHR12886:SF0] SUBFAMILY NOT NAMED; [KOG3893] Mannosyltransferase; [PTHR12886] PIG-M MANNOSYLTRANSFERASE; [GO:0005789] endoplasmic reticulum membrane; [2.4.1.-] Hexosyltransferases.19.750.8018
23 Mapoly0147s0014 [PTHR14790] FAMILY NOT NAMED; [PF08585] Domain of unknown function (DUF1767)19.900.8077
24 Mapoly0114s0011 [PTHR10848] MEIOTIC RECOMBINATION PROTEIN SPO11; [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K10878] meiotic recombination protein SPO11; [GO:0006259] DNA metabolic process; [PTHR10848:SF0] MEIOTIC RECOMBINATION PROTEIN SPO11; [PF04406] Type IIB DNA topoisomerase; [GO:0000737] DNA catabolic process, endonucleolytic; [GO:0005694] chromosome; [GO:0003824] catalytic activity; [KOG2795] Catalytic subunit of the meiotic double strand break transesterase21.930.8054
25 Mapoly0154s0004 [PTHR12999] FAMILY NOT NAMED; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)25.610.8272
26 Mapoly0036s0127 [GO:0008168] methyltransferase activity; [PTHR12829] N6-ADENOSINE-METHYLTRANSFERASE; [PF05063] MT-A70; [GO:0006139] nucleobase-containing compound metabolic process26.700.8122
27 Mapoly0071s0030 [PF03725] 3' exoribonuclease family, domain 2; [K12586] exosome complex component RRP43; [PTHR11097:SF9] EXOSOME COMPLEX EXONUCLEASE RRP43 (RIBOSOMAL RNA PROCESSING PROTEIN 43); [PTHR11097] EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN); [PF01138] 3' exoribonuclease family, domain 1; [KOG1613] Exosomal 3'-5' exoribonuclease complex, subunit Rrp4327.930.8324
28 Mapoly0062s0011 [KOG2654] Uncharacterized conserved protein; [K13106] pre-mRNA-splicing factor CWC26; [PTHR31809] FAMILY NOT NAMED; [PF09736] Pre-mRNA-splicing factor of RES complex28.140.8439
29 Mapoly0056s0054 [GO:0006506] GPI anchor biosynthetic process; [GO:0009058] biosynthetic process; [PF00534] Glycosyl transferases group 1; [K03857] phosphatidylinositol glycan, class A [EC:2.4.1.198]; [PTHR12526] GLYCOSYLTRANSFERASE; [KOG1111] N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase; [2.4.1.198] Phosphatidylinositol N-acetylglucosaminyltransferase.; [PF08288] PIGA (GPI anchor biosynthesis)28.570.8192
30 Mapoly0086s0009 [GO:0070461] SAGA-type complex; [PTHR21277] FAMILY NOT NAMED; [PF12767] Transcriptional regulator of RNA polII, SAGA, subunit29.150.8173
31 Mapoly0001s0040 [PTHR12466:SF8] SUBFAMILY NOT NAMED; [PF05179] RNA pol II accessory factor, Cdc73 family; [KOG3786] RNA polymerase II assessory factor Cdc73p; [PTHR12466] CDC73 DOMAIN PROTEIN29.220.8341
32 Mapoly0107s0026 [GO:0003723] RNA binding; [GO:0005737] cytoplasm; [K12839] survival of motor neuron-related-splicing factor 30; [GO:0006397] mRNA processing; [KOG3026] Splicing factor SPF30; [GO:0005634] nucleus; [PF06003] Survival motor neuron protein (SMN); [PTHR12664] SURVIVAL MOTOR NEURON PROTEIN30.330.8212
33 Mapoly0057s0103 -31.240.7490
34 Mapoly0026s0023 [KOG3263] Nucleic acid binding protein; [PF08648] Protein of unknown function (DUF1777); [PTHR31077] FAMILY NOT NAMED; [K12846] U4/U6.U5 tri-snRNP-associated protein 332.120.7656
35 Mapoly0007s0057 -32.330.7617
36 Mapoly0030s0063 [3.1.3.57] Inositol-1,4-bisphosphate 1-phosphatase.; [PTHR20854] INOSITOL MONOPHOSPHATASE; [K01107] inositol polyphosphate 1-phosphatase [EC:3.1.3.57]; [GO:0046854] phosphatidylinositol phosphorylation; [3.1.3.7] 3'(2'),5'-bisphosphate nucleotidase.; [KOG1528] Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1; [PF00459] Inositol monophosphatase family; [K01082] 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]32.770.7301
37 Mapoly0029s0070 [PF00397] WW domain; [GO:0005515] protein binding; [KOG3259] Peptidyl-prolyl cis-trans isomerase33.450.6792
38 Mapoly0014s0003 [GO:0035267] NuA4 histone acetyltransferase complex; [PF10513] Enhancer of polycomb-like; [GO:0032777] Piccolo NuA4 histone acetyltransferase complex; [K11322] enhancer of polycomb-like protein; [PTHR14898] ENHANCER OF POLYCOMB34.250.7869
39 Mapoly0032s0042 [GO:0051297] centrosome organization; [PF14661] HAUS augmin-like complex subunit 6 N-terminus; [PTHR16151] UNCHARACTERIZED; [GO:0051225] spindle assembly; [GO:0070652] HAUS complex35.500.7837
40 Mapoly0202s0013 [PF12937] F-box-like; [PF13516] Leucine Rich repeat; [GO:0005515] protein binding; [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN; [KOG4341] F-box protein containing LRR36.180.8252
41 Mapoly0119s0058 [GO:0005515] protein binding; [KOG2570] SWI/SNF transcription activation complex subunit; [PF02201] SWIB/MDM2 domain; [K11650] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D; [PTHR13844] BRG-1 ASSOCIATED FACTOR 60 (BAF60)36.210.7844
42 Mapoly0146s0009 [PF13855] Leucine rich repeat; [GO:0005524] ATP binding; [KOG1187] Serine/threonine protein kinase; [PF00069] Protein kinase domain; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [PF00560] Leucine Rich Repeat; [GO:0006468] protein phosphorylation; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE37.460.7829
43 Mapoly0046s0102 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0043565] sequence-specific DNA binding; [GO:0003700] sequence-specific DNA binding transcription factor activity; [PTHR13690:SF76] KELCH-RELATED; [PF00170] bZIP transcription factor; [PTHR13690] FAMILY NOT NAMED37.790.7972
44 Mapoly0001s0156 [PTHR21737] POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3; [PF10312] Conserved mid region of cactin; [GO:0005515] protein binding; [PTHR21737:SF4] CACTIN-RELATED; [KOG2370] Cactin; [PF09732] Cactus-binding C-terminus of cactin protein37.880.8088
45 Mapoly0016s0155 [GO:0005515] protein binding; [PF13417] Glutathione S-transferase, N-terminal domain; [KOG0406] Glutathione S-transferase; [PTHR11260] GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING; [PF13410] Glutathione S-transferase, C-terminal domain; [PF01814] Hemerythrin HHE cation binding domain38.570.7642
46 Mapoly0105s0048 [PF03417] Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase38.780.7626
47 Mapoly0026s0046 [GO:0003677] DNA binding; [PF01429] Methyl-CpG binding domain; [GO:0005634] nucleus43.780.8157
48 Mapoly0072s0085 [GO:0016020] membrane; [GO:0008654] phospholipid biosynthetic process; [GO:0016780] phosphotransferase activity, for other substituted phosphate groups; [PTHR14269] CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED; [K08744] cardiolipin synthase [EC:2.7.8.-]; [PF01066] CDP-alcohol phosphatidyltransferase; [2.7.8.-] Transferases for other substituted phosphate groups.43.820.7785
49 Mapoly0021s0079 [2.7.6.3] 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.; [2.5.1.15] Dihydropteroate synthase.; [K13941] 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15]; [PTHR20941] FOLATE SYNTHESIS PROTEINS; [GO:0009396] folic acid-containing compound biosynthetic process; [GO:0042558] pteridine-containing compound metabolic process; [PTHR20941:SF1] DIHYDROPTEROATE SYNTHASE; [PF01288] 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); [GO:0003848] 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity; [PF00809] Pterin binding enzyme44.730.7750
50 Mapoly0028s0083 [3.1.2.15] Ubiquitin thiolesterase.; [KOG0944] Ubiquitin-specific protease UBP14; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [GO:0005515] protein binding; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0008270] zinc ion binding; [K11836] ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.1.2.15]; [PF00627] UBA/TS-N domain; [PTHR24006] FAMILY NOT NAMED; [PF02148] Zn-finger in ubiquitin-hydrolases and other protein44.940.7598
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