Guide Gene

Gene ID
Mapoly0114s0034
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003723] RNA binding; [KOG1588] RNA-binding protein Sam68 and related KH domain proteins; [PF00013] KH domain; [PTHR11208] RNA-BINDING PROTEIN RELATED

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0114s0034 [GO:0003723] RNA binding; [KOG1588] RNA-binding protein Sam68 and related KH domain proteins; [PF00013] KH domain; [PTHR11208] RNA-BINDING PROTEIN RELATED 0.00 1.0000
1 Mapoly0052s0047 [PF03556] Cullin binding; [PTHR12281] RP42 RELATED1.000.8456
2 Mapoly0026s0023 [KOG3263] Nucleic acid binding protein; [PF08648] Protein of unknown function (DUF1777); [PTHR31077] FAMILY NOT NAMED; [K12846] U4/U6.U5 tri-snRNP-associated protein 32.000.8144
3 Mapoly0032s0117 [PF06294] Domain of Unknown Function (DUF1042); [PTHR12509] SPERMATOGENESIS-ASSOCIATED 4-RELATED3.460.8152
4 Mapoly0037s0072 [GO:0005515] protein binding; [PTHR21712] UNCHARACTERIZED; [PF00498] FHA domain3.870.8031
5 Mapoly0001s0482 [PF05764] YL1 nuclear protein; [KOG2897] DNA-binding protein YL1 and related proteins; [GO:0006355] regulation of transcription, DNA-dependent; [PF08265] YL1 nuclear protein C-terminal domain; [K11664] vacuolar protein sorting-associated protein 72; [GO:0005634] nucleus; [PTHR13275] YL-1 PROTEIN (TRANSCRIPTION FACTOR-LIKE 1)6.630.8329
6 Mapoly0001s0121 [PF00641] Zn-finger in Ran binding protein and others; [PTHR23238] RNA BINDING PROTEIN; [KOG1995] Conserved Zn-finger protein; [GO:0008270] zinc ion binding7.480.7894
7 Mapoly0002s0008 -8.120.7793
8 Mapoly0011s0128 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family10.390.7986
9 Mapoly0187s0004 [KOG0533] RRM motif-containing protein; [PTHR15241] TRANSFORMER-2-RELATED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)11.220.7877
10 Mapoly0098s0012 [PTHR23147] SERINE/ARGININE RICH SPLICING FACTOR; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)12.410.7763
11 Mapoly0093s0081 [PF10218] Uncharacterized conserved protein (DUF2054); [PF15024] Glycosyltransferase family 18; [PTHR13481] UNCHARACTERIZED14.250.7615
12 Mapoly0158s0010 [KOG1375] Beta tubulin; [PF00091] Tubulin/FtsZ family, GTPase domain; [GO:0005874] microtubule; [K07375] tubulin beta; [PTHR11588] TUBULIN; [GO:0007017] microtubule-based process; [PF03953] Tubulin C-terminal domain; [GO:0006184] GTP catabolic process; [GO:0003924] GTPase activity; [GO:0051258] protein polymerization; [GO:0043234] protein complex; [GO:0005525] GTP binding14.830.7407
13 Mapoly0027s0068 [KOG4172] Predicted E3 ubiquitin ligase; [PF13920] Zinc finger, C3HC4 type (RING finger)15.870.7728
14 Mapoly0033s0102 -17.150.7675
15 Mapoly0035s0058 -17.150.7496
16 Mapoly0021s0143 -17.610.7821
17 Mapoly0014s0119 [GO:0006355] regulation of transcription, DNA-dependent; [K11308] histone acetyltransferase MYST1 [EC:2.3.1.48]; [PF11717] RNA binding activity-knot of a chromodomain; [PTHR10615] HISTONE ACETYLTRANSFERASE; [GO:0016747] transferase activity, transferring acyl groups other than amino-acyl groups; [GO:0005634] nucleus; [PF01853] MOZ/SAS family; [2.3.1.48] Histone acetyltransferase.; [KOG2747] Histone acetyltransferase (MYST family)18.730.7638
18 Mapoly0062s0031 -19.750.7754
19 Mapoly0066s0029 [PTHR12707] PINN; [K13114] pinin; [KOG3756] Pinin (desmosome-associated protein); [PF04696] pinin/SDK/memA/ protein conserved region20.320.7978
20 Mapoly0001s0312 [PF13837] Myb/SANT-like DNA-binding domain21.170.7600
21 Mapoly0029s0083 [PTHR13063] ENOS INTERACTING PROTEIN; [K13125] nitric oxide synthase-interacting protein; [PF04641] Rtf2 RING-finger; [KOG3039] Uncharacterized conserved protein21.330.7210
22 Mapoly0069s0083 [K11662] actin-related protein 6; [PF00022] Actin; [PTHR11937:SF21] ACTIN-LIKE PROTEIN; [PTHR11937] ACTIN; [KOG0680] Actin-related protein - Arp6p21.680.7191
23 Mapoly0033s0045 -25.400.7487
24 Mapoly0022s0014 [GO:0006355] regulation of transcription, DNA-dependent; [PF07818] HCNGP-like protein; [PTHR13464] TRANSCRIPTIONAL REGULATOR PROTEIN HCNGP26.190.7450
25 Mapoly0047s0022 [PF00782] Dual specificity phosphatase, catalytic domain; [K01104] protein-tyrosine phosphatase [EC:3.1.3.48]; [GO:0006470] protein dephosphorylation; [PTHR23339] TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE; [GO:0008138] protein tyrosine/serine/threonine phosphatase activity; [3.1.3.48] Protein-tyrosine-phosphatase.; [PTHR23339:SF25] DUAL SPECIFICITY PROTEIN PHOSPHATASE28.350.7784
26 Mapoly0061s0094 [GO:0005634] nucleus; [PTHR15217:SF0] SUBFAMILY NOT NAMED; [PTHR15217] WILMS' TUMOR 1-ASSOCIATING PROTEIN; [KOG2991] Splicing regulator; [GO:0048024] regulation of mRNA splicing, via spliceosome30.200.7740
27 Mapoly0070s0050 [GO:0004843] ubiquitin-specific protease activity; [PTHR10589] UBIQUITIN CARBOXYL-TERMINAL HYDROLASE; [K05610] ubiquitin carboxyl-terminal hydrolase L5 [EC:3.4.19.12]; [GO:0006511] ubiquitin-dependent protein catabolic process; [KOG2778] Ubiquitin C-terminal hydrolase; [GO:0005622] intracellular; [3.4.19.12] Ubiquitinyl hydrolase 1.; [PTHR10589:SF16] UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5; [PF01088] Ubiquitin carboxyl-terminal hydrolase, family 130.500.7601
28 Mapoly0109s0055 [PF05186] Dpy-30 motif30.510.7722
29 Mapoly0003s0175 [KOG1105] Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1; [PF07500] Transcription factor S-II (TFIIS), central domain; [GO:0008270] zinc ion binding; [PTHR11477] TRANSCRIPTION ELONGATION FACTOR S-II; [GO:0006351] transcription, DNA-dependent; [GO:0003676] nucleic acid binding; [K03145] transcription elongation factor S-II; [PF01096] Transcription factor S-II (TFIIS)32.560.7425
30 Mapoly0003s0303 [GO:0005515] protein binding; [KOG0305] Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits; [PTHR19918:SF7] gb def: SPCC1620.04c protein; [PTHR19918] CELL DIVISION CYCLE 20 (CDC20) (FIZZY)-RELATED; [K03364] cell division cycle 20-like protein 1, cofactor of APC complex; [PF00400] WD domain, G-beta repeat32.980.7323
31 Mapoly0071s0099 [KOG2106] Uncharacterized conserved protein, contains HELP and WD40 domains; [GO:0005515] protein binding; [PTHR13720] WD-40 REPEAT PROTEIN; [PF00400] WD domain, G-beta repeat33.760.7678
32 Mapoly0076s0021 [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [KOG0342] ATP-dependent RNA helicase pitchoune; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PTHR24031:SF98] PUTATIVE ATP-DEPENDENT RNA HELICASE C22F3.08C35.240.7661
33 Mapoly0001s0063 [PTHR11635] CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN; [PF00027] Cyclic nucleotide-binding domain37.340.7496
34 Mapoly0005s0270 [PTHR10588:SF32] LEUCINE-RICH REPEAT-CONTAINING PROTEIN 48; [PTHR10588] FAMILY NOT NAMED; [KOG1644] U2-associated snRNP A' protein; [PF14580] Leucine-rich repeat38.500.7523
35 Mapoly0056s0071 [PTHR13507] UNCHARACTERIZED; [PF06658] Protein of unknown function (DUF1168)38.730.7642
36 Mapoly0054s0019 [PTHR16105:SF0] SUBFAMILY NOT NAMED; [PTHR16105] UNCHARACTERIZED; [GO:0003676] nucleic acid binding; [K13157] U11/U12 small nuclear ribonucleoprotein 65 kDa protein; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)39.500.7504
37 Mapoly0123s0019 -40.690.7659
38 Mapoly0006s0154 -41.710.7388
39 Mapoly0075s0060 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR15725] ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING; [GO:0046872] metal ion binding42.360.7777
40 Mapoly0115s0036 [GO:0005524] ATP binding; [KOG0055] Multidrug/pheromone exporter, ABC superfamily; [GO:0016021] integral to membrane; [PF00664] ABC transporter transmembrane region; [GO:0016887] ATPase activity; [GO:0006810] transport; [GO:0055085] transmembrane transport; [GO:0042626] ATPase activity, coupled to transmembrane movement of substances; [PTHR24221] FAMILY NOT NAMED; [PF00005] ABC transporter42.740.7331
41 Mapoly0006s0037 [PF03828] Cid1 family poly A polymerase; [KOG2277] S-M checkpoint control protein CID1 and related nucleotidyltransferases; [PTHR23092] TOPOISOMERASE-RELATED PROTEIN; [PF01909] Nucleotidyltransferase domain; [GO:0016779] nucleotidyltransferase activity; [PTHR23092:SF15] SUBFAMILY NOT NAMED43.050.7733
42 Mapoly0135s0033 [PF07093] SGT1 protein; [KOG2406] MADS box transcription factor; [PTHR13060] SGT1 PROTEIN (HSGT1) (SUPPRESSOR OF GCR2)48.370.7352
43 Mapoly0026s0140 -48.960.7460
44 Mapoly0068s0031 [KOG1882] Transcriptional regulator SNIP1, contains FHA domain; [GO:0005515] protein binding; [K13108] smad nuclear-interacting protein 1; [PF00498] FHA domain; [PTHR23308] NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-149.190.7472
45 Mapoly0052s0009 -51.440.7020
46 Mapoly0030s0047 [PF07572] Bucentaur or craniofacial development; [KOG4776] Uncharacterized conserved protein BCNT; [PTHR23227] BUCENTAUR RELATED51.500.7640
47 Mapoly0082s0082 -51.770.7319
48 Mapoly0186s0008 [GO:0003676] nucleic acid binding; [KOG0106] Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily); [PTHR10548] SPLICING FACTOR, ARGININE/SERINE-RICH; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)53.030.7264
49 Mapoly0023s0090 [PF00249] Myb-like DNA-binding domain; [GO:0003682] chromatin binding; [PTHR22929] RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B; [PTHR22929:SF0] SUBFAMILY NOT NAMED53.440.7434
50 Mapoly0038s0053 [PTHR23139] RNA-BINDING PROTEIN; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG0120] Splicing factor U2AF, large subunit (RRM superfamily); [GO:0003676] nucleic acid binding; [PTHR23139:SF9] SPLICING FACTOR U2AF LARGE SUBUNIT; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)53.720.7556
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