Guide Gene

Gene ID
Mapoly0070s0077
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR21551] TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1; [PTHR21551:SF1] gb def: ENSANGP00000010369 (Fragment); [K12617] DNA topoisomerase 2-associated protein PAT1

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0070s0077 [PTHR21551] TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1; [PTHR21551:SF1] gb def: ENSANGP00000010369 (Fragment); [K12617] DNA topoisomerase 2-associated protein PAT1 0.00 1.0000
1 Mapoly0079s0057 [PF03828] Cid1 family poly A polymerase; [PTHR12271] POLY(A) POLYMERASE CID (PAP)-RELATED3.320.7820
2 Mapoly0054s0061 [KOG3228] Uncharacterized conserved protein5.200.7584
3 Mapoly0003s0222 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [GO:0005524] ATP binding; [K11592] endoribonuclease Dicer [EC:3.1.26.-]; [PF02170] PAZ domain; [3.1.26.-] Endoribonucleases producing 5'-phosphomonoesters.; [PTHR14950] HELICASE-RELATED; [PF00035] Double-stranded RNA binding motif; [GO:0016891] endoribonuclease activity, producing 5'-phosphomonoesters; [GO:0005515] protein binding; [PF03368] Dicer dimerisation domain; [PF00636] Ribonuclease III domain; [PF00270] DEAD/DEAH box helicase; [GO:0004525] ribonuclease III activity; [PF00271] Helicase conserved C-terminal domain; [PF14709] double strand RNA binding domain from DEAD END PROTEIN 1; [GO:0003676] nucleic acid binding; [KOG0701] dsRNA-specific nuclease Dicer and related ribonucleases5.660.7448
4 Mapoly0012s0024 -6.630.7794
5 Mapoly0083s0040 [PTHR32002] FAMILY NOT NAMED; [PF00564] PB1 domain; [PF02042] RWP-RK domain; [GO:0005515] protein binding7.480.7123
6 Mapoly0003s0271 [PTHR31636] FAMILY NOT NAMED; [PF03514] GRAS domain family8.250.6404
7 Mapoly0106s0017 [KOG2231] Predicted E3 ubiquitin ligase; [PTHR22938:SF0] SUBFAMILY NOT NAMED; [PTHR22938] ZINC FINGER PROTEIN 59812.370.6744
8 Mapoly0055s0021 -13.490.6831
9 Mapoly0085s0070 [GO:0016567] protein ubiquitination; [GO:0005515] protein binding; [KOG0279] G protein beta subunit-like protein; [PTHR22844] F-BOX AND WD40 DOMAIN PROTEIN; [GO:0004842] ubiquitin-protein ligase activity; [PF04564] U-box domain; [PF00400] WD domain, G-beta repeat13.600.7267
10 Mapoly0031s0140 [GO:0016307] phosphatidylinositol phosphate kinase activity; [KOG0230] Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins; [GO:0005524] ATP binding; [GO:0044267] cellular protein metabolic process; [PF01504] Phosphatidylinositol-4-phosphate 5-Kinase; [PTHR11353] CHAPERONIN; [PF00118] TCP-1/cpn60 chaperonin family; [K00921] 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150]; [2.7.1.150] 1-phosphatidylinositol-3-phosphate 5-kinase.; [GO:0046872] metal ion binding; [GO:0046488] phosphatidylinositol metabolic process; [PF01363] FYVE zinc finger14.730.7135
11 Mapoly0023s0070 [PF02450] Lecithin:cholesterol acyltransferase; [PTHR11440:SF7] GB DEF: F21M11.5 PROTEIN; [PTHR11440] LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED; [GO:0008374] O-acyltransferase activity; [GO:0006629] lipid metabolic process16.970.6413
12 Mapoly0177s0011 [GO:0006289] nucleotide-excision repair; [PF00867] XPG I-region; [PF00752] XPG N-terminal domain; [GO:0003697] single-stranded DNA binding; [K10846] DNA excision repair protein ERCC-5; [GO:0005634] nucleus; [PTHR11081:SF1] DNA-REPAIR PROTEIN XP-G; [GO:0006281] DNA repair; [GO:0004518] nuclease activity; [PTHR11081] XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY; [GO:0004519] endonuclease activity20.780.7178
13 Mapoly0037s0026 [PTHR15598] AUTOANTIGEN RCD8; [GO:0005515] protein binding; [KOG1916] Nuclear protein, contains WD40 repeats; [K12616] enhancer of mRNA-decapping protein 4; [PF00400] WD domain, G-beta repeat21.680.7000
14 Mapoly0024s0081 [KOG0278] Serine/threonine kinase receptor-associated protein; [GO:0005515] protein binding; [PTHR19877] WD40 REPEAT PROTEIN; [PF00400] WD domain, G-beta repeat22.580.6445
15 Mapoly0041s0111 -23.810.6488
16 Mapoly0087s0079 [KOG4172] Predicted E3 ubiquitin ligase; [PF13920] Zinc finger, C3HC4 type (RING finger)25.750.6875
17 Mapoly0004s0170 [PF04357] Family of unknown function (DUF490)25.920.6754
18 Mapoly0002s0054 [PF04570] Protein of unknown function (DUF581)26.380.6104
19 Mapoly0009s0021 [PF04815] Sec23/Sec24 helical domain; [GO:0008270] zinc ion binding; [KOG1984] Vesicle coat complex COPII, subunit SFB3; [PF08033] Sec23/Sec24 beta-sandwich domain; [PF04811] Sec23/Sec24 trunk domain; [GO:0006886] intracellular protein transport; [K14007] protein transport protein SEC24; [PF04810] Sec23/Sec24 zinc finger; [GO:0030127] COPII vesicle coat; [PTHR13803] SEC24-RELATED PROTEIN; [GO:0006888] ER to Golgi vesicle-mediated transport; [PF00626] Gelsolin repeat27.660.6798
20 Mapoly0014s0165 -29.090.6274
21 Mapoly0113s0018 -29.660.6988
22 Mapoly0047s0113 -30.980.6962
23 Mapoly0006s0048 [GO:0005515] protein binding; [PF12490] Breast carcinoma amplified sequence 3; [PTHR13268:SF0] SUBFAMILY NOT NAMED; [PTHR13268] BREAST CARCINOMA AMPLIFIED SEQUENCE 3; [KOG2109] WD40 repeat protein; [PF00400] WD domain, G-beta repeat33.760.6642
24 Mapoly0001s0542 [KOG0266] WD40 repeat-containing protein; [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [PF02138] Beige/BEACH domain; [PF13385] Concanavalin A-like lectin/glucanases superfamily; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat34.070.7038
25 Mapoly0059s0053 [PF01988] VIT family34.940.6365
26 Mapoly0111s0022 [PF14369] zinc-finger; [GO:0005515] protein binding; [PF13639] Ring finger domain; [GO:0008270] zinc ion binding; [PTHR22763] RING ZINC FINGER PROTEIN39.120.5828
27 Mapoly0149s0009 [GO:0030904] retromer complex; [KOG1107] Membrane coat complex Retromer, subunit VPS35; [GO:0015031] protein transport; [PF03635] Vacuolar protein sorting-associated protein 35; [GO:0042147] retrograde transport, endosome to Golgi; [PTHR11099] VACUOLAR SORTING PROTEIN 3542.130.6550
28 Mapoly0171s0025 [GO:0042393] histone binding; [GO:0003677] DNA binding; [GO:0005524] ATP binding; [KOG0386] Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily); [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [PF00271] Helicase conserved C-terminal domain; [PF14619] Snf2-ATP coupling, chromatin remodelling complex44.730.6590
29 Mapoly0172s0014 [PF00569] Zinc finger, ZZ type; [GO:0008270] zinc ion binding44.740.5439
30 Mapoly0008s0071 [GO:0006355] regulation of transcription, DNA-dependent; [PF00847] AP2 domain; [GO:0003700] sequence-specific DNA binding transcription factor activity; [K09285] AP2-like factor, ANT lineage; [PTHR32467] FAMILY NOT NAMED45.000.6280
31 Mapoly0019s0177 [PF00225] Kinesin motor domain; [GO:0005524] ATP binding; [PTHR24115] FAMILY NOT NAMED; [KOG0242] Kinesin-like protein; [GO:0005871] kinesin complex; [GO:0007018] microtubule-based movement; [GO:0008017] microtubule binding; [GO:0003777] microtubule motor activity; [PF13920] Zinc finger, C3HC4 type (RING finger)45.430.6573
32 Mapoly0054s0081 [GO:0003677] DNA binding; [PF01426] BAH domain; [GO:0003682] chromatin binding; [PF08711] TFIIS helical bundle-like domain; [GO:0005634] nucleus; [GO:0006351] transcription, DNA-dependent; [KOG1886] BAH domain proteins; [PTHR15141] TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 345.690.6370
33 Mapoly0058s0093 [3.1.3.67] Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase.; [PF00782] Dual specificity phosphatase, catalytic domain; [K01110] phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase [EC:3.1.3.67]; [GO:0006470] protein dephosphorylation; [PF10409] C2 domain of PTEN tumour-suppressor protein; [PTHR12305] PHOSPHATASE WITH HOMOLOGY TO TENSIN; [GO:0008138] protein tyrosine/serine/threonine phosphatase activity50.200.6311
34 Mapoly0031s0115 [PF00569] Zinc finger, ZZ type; [GO:0008270] zinc ion binding; [KOG1776] Zn-binding protein Push; [PF13764] E3 ubiquitin-protein ligase UBR4; [PF02207] Putative zinc finger in N-recognin (UBR box); [6.3.2.19] Ubiquitin--protein ligase.; [K10691] E3 ubiquitin-protein ligase UBR4 [EC:6.3.2.19]; [GO:0004842] ubiquitin-protein ligase activity; [PTHR21725:SF1] gb def: Hypothetical protein C44E4.7; [PTHR21725] PUSHOVER/RETINOBLASTOMA-ASSOCIATED FACTOR 60050.350.6321
35 Mapoly0156s0011 [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0417] Ubiquitin-protein ligase; [K10581] ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19]; [PF00179] Ubiquitin-conjugating enzyme50.650.6110
36 Mapoly0005s0088 -50.790.5290
37 Mapoly0033s0056 [PF06203] CCT motif; [PTHR31319] FAMILY NOT NAMED; [GO:0005515] protein binding52.440.5696
38 Mapoly0143s0007 [PF08314] Secretory pathway protein Sec39; [PTHR15922:SF2] SUBFAMILY NOT NAMED; [PTHR15922] FAMILY NOT NAMED60.070.6594
39 Mapoly0011s0052 [PTHR31645] FAMILY NOT NAMED; [GO:0055085] transmembrane transport; [PF03169] OPT oligopeptide transporter protein60.470.5347
40 Mapoly0101s0033 [PTHR21663] HYPOTHETICAL HEAT DOMAIN-CONTAINING; [KOG1822] Uncharacterized conserved protein; [PTHR21663:SF0] SUBFAMILY NOT NAMED62.790.6644
41 Mapoly0123s0038 [3.1.2.15] Ubiquitin thiolesterase.; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [K11844] ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.1.2.15]; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0008270] zinc ion binding; [KOG1873] Ubiquitin-specific protease; [PTHR24006] FAMILY NOT NAMED; [PF02148] Zn-finger in ubiquitin-hydrolases and other protein63.000.6597
42 Mapoly0082s0083 [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [KOG1788] Uncharacterized conserved protein; [PF02138] Beige/BEACH domain; [PF13385] Concanavalin A-like lectin/glucanases superfamily; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat63.020.6644
43 Mapoly0006s0149 [KOG4732] Uncharacterized conserved protein; [PTHR21483] FAMILY NOT NAMED; [PF08620] RPAP1-like, C-terminal; [PF08621] RPAP1-like, N-terminal63.880.5910
44 Mapoly0013s0086 [KOG0452] RNA-binding translational regulator IRP (aconitase superfamily); [4.2.1.3] Aconitate hydratase.; [PF00694] Aconitase C-terminal domain; [K01681] aconitate hydratase 1 [EC:4.2.1.3]; [GO:0008152] metabolic process; [PTHR11670] ACONITASE; [PTHR11670:SF1] ACONITASE; [PF00330] Aconitase family (aconitate hydratase)66.180.5974
45 Mapoly0003s0056 [PF02358] Trehalose-phosphatase; [GO:0005992] trehalose biosynthetic process; [GO:0003824] catalytic activity; [KOG1050] Trehalose-6-phosphate synthase component TPS1 and related subunits; [PF00982] Glycosyltransferase family 20; [PTHR10788] TREHALOSE-6-PHOSPHATE SYNTHASE67.900.6133
46 Mapoly0100s0059 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [GO:0004672] protein kinase activity; [6.3.2.19] Ubiquitin--protein ligase.; [K10143] E3 ubiquitin-protein ligase RFWD2 [EC:6.3.2.19]; [GO:0006468] protein phosphorylation; [KOG0316] Conserved WD40 repeat-containing protein; [PF00400] WD domain, G-beta repeat68.890.5679
47 Mapoly0052s0125 [PF00637] Region in Clathrin and VPS; [PTHR12616] VACUOLAR PROTEIN SORTING VPS41; [GO:0016192] vesicle-mediated transport; [KOG2066] Vacuolar assembly/sorting protein VPS41; [GO:0005515] protein binding; [GO:0006886] intracellular protein transport; [PF00400] WD domain, G-beta repeat69.350.5967
48 Mapoly0023s0171 [GO:0016021] integral to membrane; [GO:0008381] mechanically-gated ion channel activity; [PTHR13167] UNCHARACTERIZED; [PF12166] Protein of unknown function (DUF3595); [PTHR13167:SF25] PREDICTED: SIMILAR TO MIB69.590.6475
49 Mapoly0121s0043 [PF11145] Protein of unknown function (DUF2921)70.290.5860
50 Mapoly0072s0011 [PF01602] Adaptin N terminal region; [PTHR22780] ADAPTIN, ALPHA/GAMMA/EPSILON; [GO:0016192] vesicle-mediated transport; [KOG1077] Vesicle coat complex AP-2, alpha subunit; [PF02883] Adaptin C-terminal domain; [PF02296] Alpha adaptin AP2, C-terminal domain; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [PTHR22780:SF4] ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 1 SUBUNIT (ALPHA-ADAPTIN A); [K11824] AP-2 complex subunit alpha70.360.6406
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