Guide Gene

Gene ID
Mapoly0031s0115
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF00569] Zinc finger, ZZ type; [GO:0008270] zinc ion binding; [KOG1776] Zn-binding protein Push; [PF13764] E3 ubiquitin-protein ligase UBR4; [PF02207] Putative zinc finger in N-recognin (UBR box); [6.3.2.19] Ubiquitin--protein ligase.; [K10691] E3 ubiquitin-protein ligase UBR4 [EC:6.3.2.19]; [GO:0004842] ubiquitin-protein ligase activity; [PTHR21725:SF1] gb def: Hypothetical protein C44E4.7; [PTHR21725] PUSHOVER/RETINOBLASTOMA-ASSOCIATED FACTOR 600

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0031s0115 [PF00569] Zinc finger, ZZ type; [GO:0008270] zinc ion binding; [KOG1776] Zn-binding protein Push; [PF13764] E3 ubiquitin-protein ligase UBR4; [PF02207] Putative zinc finger in N-recognin (UBR box); [6.3.2.19] Ubiquitin--protein ligase.; [K10691] E3 ubiquitin-protein ligase UBR4 [EC:6.3.2.19]; [GO:0004842] ubiquitin-protein ligase activity; [PTHR21725:SF1] gb def: Hypothetical protein C44E4.7; [PTHR21725] PUSHOVER/RETINOBLASTOMA-ASSOCIATED FACTOR 600 0.00 1.0000
1 Mapoly0123s0014 [GO:0008270] zinc ion binding; [PF02207] Putative zinc finger in N-recognin (UBR box); [KOG1139] Predicted ubiquitin-protein ligase of the N-recognin family; [PTHR21497] UBIQUITIN LIGASE E3 ALPHA-RELATED; [GO:0004842] ubiquitin-protein ligase activity1.410.8264
2 Mapoly0113s0018 -2.240.8409
3 Mapoly0013s0150 [PF07714] Protein tyrosine kinase; [PF00564] PB1 domain; [KOG0192] Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs; [PTHR23257] SERINE-THREONINE PROTEIN KINASE; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation2.830.7733
4 Mapoly0171s0025 [GO:0042393] histone binding; [GO:0003677] DNA binding; [GO:0005524] ATP binding; [KOG0386] Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily); [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [PF00271] Helicase conserved C-terminal domain; [PF14619] Snf2-ATP coupling, chromatin remodelling complex5.200.7995
5 Mapoly0031s0140 [GO:0016307] phosphatidylinositol phosphate kinase activity; [KOG0230] Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins; [GO:0005524] ATP binding; [GO:0044267] cellular protein metabolic process; [PF01504] Phosphatidylinositol-4-phosphate 5-Kinase; [PTHR11353] CHAPERONIN; [PF00118] TCP-1/cpn60 chaperonin family; [K00921] 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150]; [2.7.1.150] 1-phosphatidylinositol-3-phosphate 5-kinase.; [GO:0046872] metal ion binding; [GO:0046488] phosphatidylinositol metabolic process; [PF01363] FYVE zinc finger5.660.7871
6 Mapoly0081s0068 -7.750.7808
7 Mapoly0082s0049 [GO:0003677] DNA binding; [GO:0006260] DNA replication; [GO:0000166] nucleotide binding; [2.7.7.7] DNA-directed DNA polymerase.; [K02350] DNA polymerase zeta subunit [EC:2.7.7.7]; [PTHR10322:SF5] DNA POLYMERASE ZETA CATALYTIC SUBUNIT; [PF00136] DNA polymerase family B; [KOG0968] DNA polymerase zeta, catalytic subunit; [GO:0003887] DNA-directed DNA polymerase activity; [PF03104] DNA polymerase family B, exonuclease domain; [PF14260] C4-type zinc-finger of DNA polymerase delta; [PTHR10322] DNA POLYMERASE CATALYTIC SUBUNIT8.940.7556
8 Mapoly0006s0048 [GO:0005515] protein binding; [PF12490] Breast carcinoma amplified sequence 3; [PTHR13268:SF0] SUBFAMILY NOT NAMED; [PTHR13268] BREAST CARCINOMA AMPLIFIED SEQUENCE 3; [KOG2109] WD40 repeat protein; [PF00400] WD domain, G-beta repeat9.000.7569
9 Mapoly0012s0024 -9.750.7870
10 Mapoly0047s0113 -12.690.7792
11 Mapoly0004s0170 [PF04357] Family of unknown function (DUF490)15.870.7170
12 Mapoly0156s0011 [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0417] Ubiquitin-protein ligase; [K10581] ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19]; [PF00179] Ubiquitin-conjugating enzyme16.970.6816
13 Mapoly0003s0056 [PF02358] Trehalose-phosphatase; [GO:0005992] trehalose biosynthetic process; [GO:0003824] catalytic activity; [KOG1050] Trehalose-6-phosphate synthase component TPS1 and related subunits; [PF00982] Glycosyltransferase family 20; [PTHR10788] TREHALOSE-6-PHOSPHATE SYNTHASE18.890.7085
14 Mapoly0121s0003 [GO:0006904] vesicle docking involved in exocytosis; [GO:0016192] vesicle-mediated transport; [PTHR11679] VESICLE PROTEIN SORTING-ASSOCIATED; [KOG1300] Vesicle trafficking protein Sec1; [PF00995] Sec1 family25.300.6328
15 Mapoly0041s0089 [PF10377] Autophagy-related protein 11; [PTHR13222:SF1] gb def: cg1347 gene product [drosophila melanogaster]; [PTHR13222] CGTHBA PROTEIN (-14 GENE PROTEIN)27.040.6618
16 Mapoly0003s0184 [GO:0006396] RNA processing; [GO:0003677] DNA binding; [GO:0003723] RNA binding; [GO:0005524] ATP binding; [K11592] endoribonuclease Dicer [EC:3.1.26.-]; [PF02170] PAZ domain; [3.1.26.-] Endoribonucleases producing 5'-phosphomonoesters.; [PTHR14950] HELICASE-RELATED; [GO:0005515] protein binding; [GO:0016891] endoribonuclease activity, producing 5'-phosphomonoesters; [GO:0016787] hydrolase activity; [PF04851] Type III restriction enzyme, res subunit; [PF03368] Dicer dimerisation domain; [PF00636] Ribonuclease III domain; [GO:0004525] ribonuclease III activity; [PF00271] Helicase conserved C-terminal domain; [PF14709] double strand RNA binding domain from DEAD END PROTEIN 1; [KOG0701] dsRNA-specific nuclease Dicer and related ribonucleases29.290.7548
17 Mapoly0001s0542 [KOG0266] WD40 repeat-containing protein; [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [PF02138] Beige/BEACH domain; [PF13385] Concanavalin A-like lectin/glucanases superfamily; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat30.000.7508
18 Mapoly0037s0026 [PTHR15598] AUTOANTIGEN RCD8; [GO:0005515] protein binding; [KOG1916] Nuclear protein, contains WD40 repeats; [K12616] enhancer of mRNA-decapping protein 4; [PF00400] WD domain, G-beta repeat30.710.7040
19 Mapoly0076s0015 [PF13589] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase31.460.6862
20 Mapoly0014s0165 -32.740.6294
21 Mapoly0076s0056 [3.1.13.4] Poly(A)-specific ribonuclease.; [GO:0005634] nucleus; [PF04857] CAF1 family ribonuclease; [PTHR15092] POLY(A)-SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1; [K01148] poly(A)-specific ribonuclease [EC:3.1.13.4]33.910.6580
22 Mapoly0138s0020 [PTHR23213] FORMIN-RELATED; [PF02181] Formin Homology 2 Domain; [PF10409] C2 domain of PTEN tumour-suppressor protein; [KOG1922] Rho GTPase effector BNI1 and related formins34.990.7173
23 Mapoly0032s0133 [PF12432] Protein of unknown function (DUF3677); [PTHR21224:SF1] SUBFAMILY NOT NAMED; [K13138] integrator complex subunit 1; [PTHR21224] UNCHARACTERIZED35.070.7187
24 Mapoly0014s0115 [PTHR15137] TRANSCRIPTION INITIATION FACTOR TFIID; [PF01433] Peptidase family M1; [GO:0008237] metallopeptidase activity; [GO:0008270] zinc ion binding; [K03128] transcription initiation factor TFIID subunit 2; [KOG1932] TATA binding protein associated factor35.780.7121
25 Mapoly0016s0143 [KOG3783] Uncharacterized conserved protein; [PTHR31859] FAMILY NOT NAMED; [PF10300] Protein of unknown function (DUF3808)37.550.5758
26 Mapoly0107s0053 [GO:0008601] protein phosphatase type 2A regulator activity; [PTHR10257] SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B; [GO:0000159] protein phosphatase type 2A complex; [KOG2085] Serine/threonine protein phosphatase 2A, regulatory subunit; [GO:0007165] signal transduction; [K11584] protein phosphatase 2 (formerly 2A), regulatory subunit B'; [PF01603] Protein phosphatase 2A regulatory B subunit (B56 family)42.490.7136
27 Mapoly0019s0073 [GO:0008565] protein transporter activity; [PTHR23316:SF0] SUBFAMILY NOT NAMED; [PF01749] Importin beta binding domain; [PF00514] Armadillo/beta-catenin-like repeat; [GO:0005737] cytoplasm; [GO:0005515] protein binding; [KOG0166] Karyopherin (importin) alpha; [GO:0005634] nucleus; [PTHR23316] IMPORTIN ALPHA; [GO:0006606] protein import into nucleus43.470.6623
28 Mapoly0004s0006 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [KOG0600] Cdc2-related protein kinase; [PTHR24056] CELL DIVISION PROTEIN KINASE43.820.7036
29 Mapoly0047s0119 [KOG0891] DNA-dependent protein kinase; [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [PF02259] FAT domain; [PF08771] Rapamycin binding domain; [K07203] FKBP12-rapamycin complex-associated protein; [GO:0005515] protein binding; [GO:0008144] drug binding; [PF11865] Domain of unknown function (DUF3385); [PF00454] Phosphatidylinositol 3- and 4-kinase; [PF02260] FATC domain; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED45.210.7286
30 Mapoly0001s0206 [KOG2073] SAP family cell cycle dependent phosphatase-associated protein; [PTHR12634:SF8] SUBFAMILY NOT NAMED; [PF04499] SIT4 phosphatase-associated protein; [PTHR12634] SIT4(YEAST)-ASSOCIATING PROTEIN-RELATED46.170.6951
31 Mapoly0054s0061 [KOG3228] Uncharacterized conserved protein47.560.6674
32 Mapoly0074s0075 [PTHR31546] FAMILY NOT NAMED; [PF10033] Autophagy-related protein 13; [KOG4573] Phosphoprotein involved in cytoplasm to vacuole targeting and autophagy48.760.6873
33 Mapoly0010s0094 [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [PF02259] FAT domain; [GO:0005515] protein binding; [PF00454] Phosphatidylinositol 3- and 4-kinase; [KOG0889] Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily; [PTHR11139:SF1] ATM-RELATED; [K08874] transformation/transcription domain-associated protein; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED48.990.7186
34 Mapoly0070s0077 [PTHR21551] TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1; [PTHR21551:SF1] gb def: ENSANGP00000010369 (Fragment); [K12617] DNA topoisomerase 2-associated protein PAT150.350.6321
35 Mapoly0001s0369 [K12879] THO complex subunit 2; [PF11262] Transcription factor/nuclear export subunit protein 2; [PTHR21597] THO2 PROTEIN; [PF11732] Transcription- and export-related complex subunit; [PTHR21597:SF0] SUBFAMILY NOT NAMED; [KOG1874] KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin451.240.7293
36 Mapoly0077s0049 -51.870.5390
37 Mapoly0125s0045 [PF05664] Protein of unknown function (DUF810); [PTHR31280] FAMILY NOT NAMED51.910.6455
38 Mapoly0079s0050 [2.7.11.25] Mitogen-activated protein kinase kinase kinase.; [PF07714] Protein tyrosine kinase; [K04424] sterile alpha motif and leucine zipper containing kinase AZK [EC:2.7.11.25]; [KOG0192] Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs; [PTHR23257] SERINE-THREONINE PROTEIN KINASE; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PF14381] Ethylene-responsive protein kinase Le-CTR152.530.6851
39 Mapoly0008s0012 -54.740.6023
40 Mapoly0065s0050 [KOG0998] Synaptic vesicle protein EHS-1 and related EH domain proteins; [PTHR11216] EH DOMAIN; [GO:0005509] calcium ion binding; [PF13202] EF hand; [PF12763] Cytoskeletal-regulatory complex EF hand55.480.6461
41 Mapoly0111s0022 [PF14369] zinc-finger; [GO:0005515] protein binding; [PF13639] Ring finger domain; [GO:0008270] zinc ion binding; [PTHR22763] RING ZINC FINGER PROTEIN58.930.5671
42 Mapoly0056s0058 [PF04576] Zein-binding; [PTHR31448] FAMILY NOT NAMED60.170.5370
43 Mapoly0104s0019 [KOG2242] Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain; [PTHR12381:SF13] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [PF13671] AAA domain; [PF00622] SPRY domain; [PTHR12381] RIBONUCLEOPROTEIN60.210.6989
44 Mapoly0011s0132 -63.060.6881
45 Mapoly0011s0120 [PTHR23323] VACUOLAR MEMBRANE PROTEIN RELATED; [PF00637] Region in Clathrin and VPS; [KOG2034] Vacuolar sorting protein PEP3/VPS18; [GO:0016192] vesicle-mediated transport; [PF05131] Pep3/Vps18/deep orange family; [PTHR23323:SF26] SUBFAMILY NOT NAMED; [GO:0006886] intracellular protein transport63.450.6318
46 Mapoly0224s0007 [PTHR12456] TOPOISOMERASE 1-BINDING RING FINGER-RELATED; [PF00097] Zinc finger, C3HC4 type (RING finger); [GO:0046872] metal ion binding64.250.6513
47 Mapoly0023s0171 [GO:0016021] integral to membrane; [GO:0008381] mechanically-gated ion channel activity; [PTHR13167] UNCHARACTERIZED; [PF12166] Protein of unknown function (DUF3595); [PTHR13167:SF25] PREDICTED: SIMILAR TO MIB64.480.6777
48 Mapoly0124s0011 [KOG1825] Fry-like conserved proteins; [PF14225] Cell morphogenesis C-terminal; [PTHR12295] UNCHARACTERIZED; [PF14222] Cell morphogenesis N-terminal; [PF14228] Cell morphogenesis central region64.540.6720
49 Mapoly0130s0035 [KOG4282] Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain; [PTHR21654] FAMILY NOT NAMED; [PTHR21654:SF0] SUBFAMILY NOT NAMED; [PF13837] Myb/SANT-like DNA-binding domain65.120.6468
50 Mapoly0009s0011 [PF06650] Protein of unknown function (DUF1162); [PTHR16166] VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN (VPS13); [PF12624] N-terminal region of Chorein, a TM vesicle-mediated sorter66.140.6914
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