Guide Gene

Gene ID
Mapoly0009s0021
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF04815] Sec23/Sec24 helical domain; [GO:0008270] zinc ion binding; [KOG1984] Vesicle coat complex COPII, subunit SFB3; [PF08033] Sec23/Sec24 beta-sandwich domain; [PF04811] Sec23/Sec24 trunk domain; [GO:0006886] intracellular protein transport; [K14007] protein transport protein SEC24; [PF04810] Sec23/Sec24 zinc finger; [GO:0030127] COPII vesicle coat; [PTHR13803] SEC24-RELATED PROTEIN; [GO:0006888] ER to Golgi vesicle-mediated transport; [PF00626] Gelsolin repeat

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0009s0021 [PF04815] Sec23/Sec24 helical domain; [GO:0008270] zinc ion binding; [KOG1984] Vesicle coat complex COPII, subunit SFB3; [PF08033] Sec23/Sec24 beta-sandwich domain; [PF04811] Sec23/Sec24 trunk domain; [GO:0006886] intracellular protein transport; [K14007] protein transport protein SEC24; [PF04810] Sec23/Sec24 zinc finger; [GO:0030127] COPII vesicle coat; [PTHR13803] SEC24-RELATED PROTEIN; [GO:0006888] ER to Golgi vesicle-mediated transport; [PF00626] Gelsolin repeat 0.00 1.0000
1 Mapoly0135s0025 [PF13513] HEAT-like repeat; [GO:0005515] protein binding; [PTHR23346] TRANSLATIONAL ACTIVATOR GCN1-RELATED; [PF02985] HEAT repeat; [PTHR23346:SF7] TRANSLATIONAL ACTIVATOR GCN1-RELATED; [PF12074] Domain of unknown function (DUF3554); [KOG1242] Protein containing adaptin N-terminal region; [PF13646] HEAT repeats1.730.8430
2 Mapoly0012s0024 -3.740.8233
3 Mapoly0107s0053 [GO:0008601] protein phosphatase type 2A regulator activity; [PTHR10257] SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B; [GO:0000159] protein phosphatase type 2A complex; [KOG2085] Serine/threonine protein phosphatase 2A, regulatory subunit; [GO:0007165] signal transduction; [K11584] protein phosphatase 2 (formerly 2A), regulatory subunit B'; [PF01603] Protein phosphatase 2A regulatory B subunit (B56 family)5.200.8108
4 Mapoly0082s0081 [PF05383] La domain; [KOG2590] RNA-binding protein LARP/SRO9 and related La domain proteins; [PTHR22792] LUPUS LA PROTEIN-RELATED6.630.7887
5 Mapoly0003s0222 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [GO:0005524] ATP binding; [K11592] endoribonuclease Dicer [EC:3.1.26.-]; [PF02170] PAZ domain; [3.1.26.-] Endoribonucleases producing 5'-phosphomonoesters.; [PTHR14950] HELICASE-RELATED; [PF00035] Double-stranded RNA binding motif; [GO:0016891] endoribonuclease activity, producing 5'-phosphomonoesters; [GO:0005515] protein binding; [PF03368] Dicer dimerisation domain; [PF00636] Ribonuclease III domain; [PF00270] DEAD/DEAH box helicase; [GO:0004525] ribonuclease III activity; [PF00271] Helicase conserved C-terminal domain; [PF14709] double strand RNA binding domain from DEAD END PROTEIN 1; [GO:0003676] nucleic acid binding; [KOG0701] dsRNA-specific nuclease Dicer and related ribonucleases6.930.7556
6 Mapoly0037s0036 [GO:0005524] ATP binding; [PTHR23077:SF9] PEROXISOME ASSEMBLY FACTOR-2 (PEROXISOMAL-TYPE ATPASE 1); [KOG0736] Peroxisome assembly factor 2 containing the AAA+-type ATPase domain; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23077] AAA-FAMILY ATPASE; [K13339] peroxin-67.210.6773
7 Mapoly0069s0084 [3.6.5.5] Dynamin GTPase.; [KOG0446] Vacuolar sorting protein VPS1, dynamin, and related proteins; [K01528] dynamin GTPase [EC:3.6.5.5]; [PF02212] Dynamin GTPase effector domain; [PF00350] Dynamin family; [PTHR11566] DYNAMIN; [GO:0003924] GTPase activity; [PTHR11566:SF21] SUBFAMILY NOT NAMED; [GO:0005525] GTP binding; [PF01031] Dynamin central region7.420.7752
8 Mapoly0024s0081 [KOG0278] Serine/threonine kinase receptor-associated protein; [GO:0005515] protein binding; [PTHR19877] WD40 REPEAT PROTEIN; [PF00400] WD domain, G-beta repeat7.480.7341
9 Mapoly0130s0022 [GO:0008565] protein transporter activity; [PF01602] Adaptin N terminal region; [PTHR22780] ADAPTIN, ALPHA/GAMMA/EPSILON; [GO:0016192] vesicle-mediated transport; [GO:0015031] protein transport; [PTHR22780:SF5] ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA SUBUNIT (GAMMA-ADAPTIN); [PF02883] Adaptin C-terminal domain; [KOG1062] Vesicle coat complex AP-1, gamma subunit; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [K12391] AP-1 complex subunit gamma-1; [GO:0005794] Golgi apparatus9.490.7524
10 Mapoly0125s0045 [PF05664] Protein of unknown function (DUF810); [PTHR31280] FAMILY NOT NAMED10.820.7348
11 Mapoly0171s0025 [GO:0042393] histone binding; [GO:0003677] DNA binding; [GO:0005524] ATP binding; [KOG0386] Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily); [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [PF00271] Helicase conserved C-terminal domain; [PF14619] Snf2-ATP coupling, chromatin remodelling complex10.910.7649
12 Mapoly0072s0011 [PF01602] Adaptin N terminal region; [PTHR22780] ADAPTIN, ALPHA/GAMMA/EPSILON; [GO:0016192] vesicle-mediated transport; [KOG1077] Vesicle coat complex AP-2, alpha subunit; [PF02883] Adaptin C-terminal domain; [PF02296] Alpha adaptin AP2, C-terminal domain; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [PTHR22780:SF4] ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 1 SUBUNIT (ALPHA-ADAPTIN A); [K11824] AP-2 complex subunit alpha11.220.7714
13 Mapoly0081s0065 [GO:0016020] membrane; [PTHR11119] XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER; [GO:0006810] transport; [GO:0055085] transmembrane transport; [KOG1292] Xanthine/uracil transporters; [GO:0005215] transporter activity; [PF00860] Permease family11.750.7228
14 Mapoly0019s0073 [GO:0008565] protein transporter activity; [PTHR23316:SF0] SUBFAMILY NOT NAMED; [PF01749] Importin beta binding domain; [PF00514] Armadillo/beta-catenin-like repeat; [GO:0005737] cytoplasm; [GO:0005515] protein binding; [KOG0166] Karyopherin (importin) alpha; [GO:0005634] nucleus; [PTHR23316] IMPORTIN ALPHA; [GO:0006606] protein import into nucleus12.650.7253
15 Mapoly0146s0008 [GO:0008641] small protein activating enzyme activity; [GO:0005524] ATP binding; [PF09358] Ubiquitin-activating enzyme e1 C-terminal domain; [PF00899] ThiF family; [PF02134] Repeat in ubiquitin-activating (UBA) protein; [6.3.2.19] Ubiquitin--protein ligase.; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [GO:0003824] catalytic activity; [KOG2012] Ubiquitin activating enzyme UBA1; [PF10585] Ubiquitin-activating enzyme active site; [GO:0006464] cellular protein modification process; [K03178] ubiquitin-activating enzyme E1 [EC:6.3.2.19]; [PTHR10953:SF4] UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 1 (UBIQUITIN-ACTIVATING ENZYME E1)12.730.7268
16 Mapoly0011s0120 [PTHR23323] VACUOLAR MEMBRANE PROTEIN RELATED; [PF00637] Region in Clathrin and VPS; [KOG2034] Vacuolar sorting protein PEP3/VPS18; [GO:0016192] vesicle-mediated transport; [PF05131] Pep3/Vps18/deep orange family; [PTHR23323:SF26] SUBFAMILY NOT NAMED; [GO:0006886] intracellular protein transport14.140.7217
17 Mapoly0125s0020 [PF06972] Protein of unknown function (DUF1296); [PTHR12758] APOPTOSIS INHIBITOR 5-RELATED; [PTHR12758:SF13] APOPTOSIS INHIBITOR 5-RELATED16.000.7308
18 Mapoly0104s0033 [GO:0005524] ATP binding; [3.6.4.6] Vesicle-fusing ATPase.; [PF02359] Cell division protein 48 (CDC48), N-terminal domain; [PF02933] Cell division protein 48 (CDC48), domain 2; [K06027] vesicle-fusing ATPase [EC:3.6.4.6]; [PF00004] ATPase family associated with various cellular activities (AAA); [KOG0741] AAA+-type ATPase; [PTHR23078] VESICULAR-FUSION PROTEIN NSF; [PTHR23078:SF3] VESICULAR-FUSION PROTEIN NSF19.600.6640
19 Mapoly0119s0035 -21.630.7350
20 Mapoly0011s0209 -21.910.7412
21 Mapoly0183s0015 [GO:0016020] membrane; [PTHR12741] LYST-INTERACTING PROTEIN LIP5 (DOPAMINE RESPONSIVE PROTEIN DRG-1); [PF02364] 1,3-beta-glucan synthase component; [PF04652] Vta1 like; [GO:0006075] (1-3)-beta-D-glucan biosynthetic process; [KOG0916] 1,3-beta-glucan synthase/callose synthase catalytic subunit; [GO:0000148] 1,3-beta-D-glucan synthase complex; [PF14288] 1,3-beta-glucan synthase subunit FKS1, domain-1; [K11000] callose synthase [EC:2.4.1.-]; [PTHR12741:SF6] SUBFAMILY NOT NAMED; [GO:0003843] 1,3-beta-D-glucan synthase activity; [2.4.1.-] Hexosyltransferases.22.980.7218
22 Mapoly0067s0081 [GO:0003723] RNA binding; [K13126] polyadenylate-binding protein; [PF00658] Poly-adenylate binding protein, unique domain; [KOG0123] Polyadenylate-binding protein (RRM superfamily); [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)23.470.7266
23 Mapoly0154s0021 [GO:0003723] RNA binding; [PTHR23253] EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA; [PF02854] MIF4G domain; [GO:0005515] protein binding; [KOG0401] Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G); [K03260] translation initiation factor eIF-4F; [PF02847] MA3 domain24.900.7015
24 Mapoly0019s0051 [GO:0003723] RNA binding; [PTHR23270] PROGRAMMED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5); [GO:0006397] mRNA processing; [GO:0005634] nucleus; [PF00575] S1 RNA binding domain; [KOG1070] rRNA processing protein Rrp5; [PF05843] Suppressor of forked protein (Suf)25.920.7250
25 Mapoly0156s0011 [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0417] Ubiquitin-protein ligase; [K10581] ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19]; [PF00179] Ubiquitin-conjugating enzyme26.320.6668
26 Mapoly0033s0105 [PF03470] XS zinc finger domain; [PTHR21596] RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED; [PF03468] XS domain; [GO:0031047] gene silencing by RNA26.720.6985
27 Mapoly0070s0077 [PTHR21551] TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1; [PTHR21551:SF1] gb def: ENSANGP00000010369 (Fragment); [K12617] DNA topoisomerase 2-associated protein PAT127.660.6798
28 Mapoly0153s0017 [PTHR12860] SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN; [KOG2460] Signal recognition particle, subunit Srp68; [K03107] signal recognition particle subunit SRP6828.000.7135
29 Mapoly0019s0177 [PF00225] Kinesin motor domain; [GO:0005524] ATP binding; [PTHR24115] FAMILY NOT NAMED; [KOG0242] Kinesin-like protein; [GO:0005871] kinesin complex; [GO:0007018] microtubule-based movement; [GO:0008017] microtubule binding; [GO:0003777] microtubule motor activity; [PF13920] Zinc finger, C3HC4 type (RING finger)28.840.7158
30 Mapoly0075s0052 [GO:0005524] ATP binding; [KOG0055] Multidrug/pheromone exporter, ABC superfamily; [GO:0016021] integral to membrane; [PF00664] ABC transporter transmembrane region; [GO:0016887] ATPase activity; [GO:0006810] transport; [GO:0055085] transmembrane transport; [GO:0042626] ATPase activity, coupled to transmembrane movement of substances; [PTHR24221] FAMILY NOT NAMED; [PF00005] ABC transporter28.860.6809
31 Mapoly0082s0043 [GO:0046034] ATP metabolic process; [GO:0005524] ATP binding; [3.6.3.14] H(+)-transporting two-sector ATPase.; [PF00006] ATP synthase alpha/beta family, nucleotide-binding domain; [GO:0015992] proton transport; [K02133] F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]; [KOG1350] F0F1-type ATP synthase, beta subunit; [GO:0033178] proton-transporting two-sector ATPase complex, catalytic domain; [GO:0015991] ATP hydrolysis coupled proton transport; [GO:0016820] hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; [PF02874] ATP synthase alpha/beta family, beta-barrel domain; [PTHR15184] ATP SYNTHASE; [PF00306] ATP synthase alpha/beta chain, C terminal domain29.700.6411
32 Mapoly0037s0026 [PTHR15598] AUTOANTIGEN RCD8; [GO:0005515] protein binding; [KOG1916] Nuclear protein, contains WD40 repeats; [K12616] enhancer of mRNA-decapping protein 4; [PF00400] WD domain, G-beta repeat30.460.7130
33 Mapoly0054s0064 [PF03178] CPSF A subunit region; [PF10433] Mono-functional DNA-alkylating methyl methanesulfonate N-term; [PTHR10644:SF3] DNA DAMAGE-BINDING PROTEIN 1 (DAMAGE-SPECIFIC DNA-BINDING PROTEIN 1)(UV-DAMAGED DNA-BINDING FACTOR); [K10610] DNA damage-binding protein 1; [GO:0005634] nucleus; [PTHR10644] DNA REPAIR/RNA PROCESSING CPSF FAMILY; [KOG1897] Damage-specific DNA binding complex, subunit DDB1; [GO:0003676] nucleic acid binding32.400.6903
34 Mapoly0078s0045 [KOG3534] p53 inducible protein PIR121; [PF05994] Cytoplasmic Fragile-X interacting family; [K05749] cytoplasmic FMR1 interacting protein; [PTHR12195:SF0] SUBFAMILY NOT NAMED; [PTHR12195] P53 INDUCIBLE PROTEIN-RELATED33.910.6802
35 Mapoly0001s0208 [PTHR31431] FAMILY NOT NAMED; [KOG4833] Uncharacterized conserved protein; [K14311] nuclear pore complex protein Nup188; [PF10487] Nucleoporin subcomplex protein binding to Pom3434.940.7401
36 Mapoly0013s0086 [KOG0452] RNA-binding translational regulator IRP (aconitase superfamily); [4.2.1.3] Aconitate hydratase.; [PF00694] Aconitase C-terminal domain; [K01681] aconitate hydratase 1 [EC:4.2.1.3]; [GO:0008152] metabolic process; [PTHR11670] ACONITASE; [PTHR11670:SF1] ACONITASE; [PF00330] Aconitase family (aconitate hydratase)35.750.6568
37 Mapoly0001s0542 [KOG0266] WD40 repeat-containing protein; [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [PF02138] Beige/BEACH domain; [PF13385] Concanavalin A-like lectin/glucanases superfamily; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat38.540.7309
38 Mapoly0037s0073 [PF13855] Leucine rich repeat; [GO:0005515] protein binding; [PF12819] Carbohydrate-binding protein of the ER; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE40.000.5871
39 Mapoly0022s0045 [PTHR10121:SF0] COATOMER SUBUNIT DELTA; [GO:0016192] vesicle-mediated transport; [GO:0005515] protein binding; [GO:0030126] COPI vesicle coat; [PF00928] Adaptor complexes medium subunit family; [KOG2635] Medium subunit of clathrin adaptor complex; [GO:0006890] retrograde vesicle-mediated transport, Golgi to ER; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [PTHR10121] COATOMER SUBUNIT DELTA40.120.6862
40 Mapoly0081s0068 -40.350.6964
41 Mapoly0081s0051 [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [PF02259] FAT domain; [GO:0005515] protein binding; [2.7.11.1] Non-specific serine/threonine protein kinase.; [PF11640] Telomere-length maintenance and DNA damage repair; [PF00454] Phosphatidylinositol 3- and 4-kinase; [GO:0004674] protein serine/threonine kinase activity; [PF02260] FATC domain; [K04728] ataxia telangectasia mutated family protein [EC:2.7.11.1]; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED42.210.6999
42 Mapoly0058s0070 [PF00168] C2 domain; [PF00514] Armadillo/beta-catenin-like repeat; [GO:0005515] protein binding; [KOG0166] Karyopherin (importin) alpha; [PTHR23315] BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING43.570.6563
43 Mapoly0069s0006 [PF05221] S-adenosyl-L-homocysteine hydrolase; [3.3.1.1] Adenosylhomocysteinase.; [GO:0004013] adenosylhomocysteinase activity; [KOG1370] S-adenosylhomocysteine hydrolase; [PTHR23420] ADENOSYLHOMOCYSTEINASE; [GO:0006730] one-carbon metabolic process; [K01251] adenosylhomocysteinase [EC:3.3.1.1]; [PF00670] S-adenosyl-L-homocysteine hydrolase, NAD binding domain43.590.6537
44 Mapoly0125s0035 [PTHR23081] RNA POLYMERASE II CTD PHOSPHATASE; [PF00035] Double-stranded RNA binding motif; [PF03031] NLI interacting factor-like phosphatase; [GO:0005515] protein binding; [PTHR23081:SF1] RNA POLYMERASE II CTD PHOSPHATASE44.000.7230
45 Mapoly0075s0069 [GO:0030130] clathrin coat of trans-Golgi network vesicle; [GO:0016192] vesicle-mediated transport; [PTHR10639] CLATHRIN LIGHT CHAIN; [PF01086] Clathrin light chain; [GO:0006886] intracellular protein transport; [GO:0030132] clathrin coat of coated pit; [GO:0005198] structural molecule activity46.860.6696
46 Mapoly0156s0008 [PTHR13923] SEC31-RELATED PROTEIN; [GO:0005515] protein binding; [KOG0307] Vesicle coat complex COPII, subunit SEC31; [K14005] protein transport protein SEC31; [PF12931] Sec23-binding domain of Sec16; [PF00400] WD domain, G-beta repeat47.340.7152
47 Mapoly0059s0053 [PF01988] VIT family48.470.6461
48 Mapoly0046s0118 [PF00395] S-layer homology domain48.990.6541
49 Mapoly0047s0119 [KOG0891] DNA-dependent protein kinase; [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [PF02259] FAT domain; [PF08771] Rapamycin binding domain; [K07203] FKBP12-rapamycin complex-associated protein; [GO:0005515] protein binding; [GO:0008144] drug binding; [PF11865] Domain of unknown function (DUF3385); [PF00454] Phosphatidylinositol 3- and 4-kinase; [PF02260] FATC domain; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED49.990.7286
50 Mapoly0107s0027 [PTHR10648] SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT; [K03456] protein phosphatase 2 (formerly 2A), regulatory subunit A; [KOG0211] Protein phosphatase 2A regulatory subunit A and related proteins; [PF13646] HEAT repeats50.600.6513
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