Guide Gene

Gene ID
Mapoly0109s0026
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0005515] protein binding; [KOG1446] Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2; [PTHR19861] WD40 REPEAT PROTEIN SWD2; [PF00400] WD domain, G-beta repeat

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0109s0026 [GO:0005515] protein binding; [KOG1446] Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2; [PTHR19861] WD40 REPEAT PROTEIN SWD2; [PF00400] WD domain, G-beta repeat 0.00 1.0000
1 Mapoly0076s0002 [PTHR14854] NIF3L1BP1 PROTEIN-RELATED; [KOG3215] Uncharacterized conserved protein; [GO:0000445] THO complex part of transcription export complex; [GO:0006397] mRNA processing; [K13176] THO complex subunit 7; [PF05615] Tho complex subunit 71.410.7774
2 Mapoly0061s0117 -3.460.7699
3 Mapoly0058s0033 [PTHR20383] FAMILY NOT NAMED; [KOG2424] Protein involved in transcription start site selection; [GO:0004721] phosphoprotein phosphatase activity; [GO:0006397] mRNA processing; [GO:0005634] nucleus; [PF04722] Ssu72-like protein4.900.7714
4 Mapoly0037s0122 [PTHR12777] SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2; [KOG3459] Small nuclear ribonucleoprotein (snRNP) Sm core protein; [GO:0030532] small nuclear ribonucleoprotein complex; [K11096] small nuclear ribonucleoprotein D2; [PF01423] LSM domain; [GO:0008380] RNA splicing8.060.7829
5 Mapoly0005s0179 [K11877] proteasome assembly chaperone 3; [PF10178] Uncharacterised conserved protein (DUF2372); [KOG4828] Uncharacterized conserved protein; [PTHR31051] FAMILY NOT NAMED8.490.7533
6 Mapoly0011s0105 [PTHR21242] TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10; [GO:0006352] DNA-dependent transcription, initiation; [PTHR21242:SF0] TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10; [K03134] transcription initiation factor TFIID subunit 10; [GO:0005634] nucleus; [PF03540] Transcription initiation factor TFIID 23-30kDa subunit12.120.7627
7 Mapoly0086s0082 [KOG3391] Transcriptional co-repressor component; [PF06487] Sin3 associated polypeptide p18 (SAP18); [K14324] histone deacetylase complex subunit SAP18; [PTHR13082] SAP1813.600.7695
8 Mapoly0107s0018 [GO:0015035] protein disulfide oxidoreductase activity; [PTHR13887] GLUTATHIONE S-TRANSFERASE KAPPA; [PF01323] DSBA-like thioredoxin domain16.250.7144
9 Mapoly0207s0011 [KOG0114] Predicted RNA-binding protein (RRM superfamily); [PTHR22630:SF0] SUBFAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [K12833] pre-mRNA branch site protein p14; [PTHR22630] PRE-MRNA BRANCH SITE PROTEIN; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)16.250.7392
10 Mapoly0058s0062 [GO:0032502] developmental process; [PF00022] Actin; [GO:0005634] nucleus; [GO:0006325] chromatin organization; [PTHR11937] ACTIN; [KOG0676] Actin and related proteins16.880.6474
11 Mapoly0053s0055 [KOG0871] Class 2 transcription repressor NC2, beta subunit (Dr1); [GO:0043565] sequence-specific DNA binding; [PF00808] Histone-like transcription factor (CBF/NF-Y) and archaeal histone; [PTHR11064] CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED; [GO:0005622] intracellular16.970.7249
12 Mapoly0054s0132 [GO:0003677] DNA binding; [K03007] DNA-directed RNA polymerases I, II, and III subunit RPABC5; [PF01194] RNA polymerases N / 8 kDa subunit; [GO:0006351] transcription, DNA-dependent; [KOG3497] DNA-directed RNA polymerase, subunit RPB10; [GO:0003899] DNA-directed RNA polymerase activity; [PTHR23413] 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N18.380.7392
13 Mapoly0022s0103 [KOG4054] Uncharacterized conserved protein; [PTHR20955] UNCHARACTERIZED; [GO:0005789] endoplasmic reticulum membrane; [PF07086] Protein of unknown function (DUF1352); [GO:0007029] endoplasmic reticulum organization18.710.7110
14 Mapoly0214s0009 [KOG3467] Histone H4; [GO:0003677] DNA binding; [PTHR10484] HISTONE H4; [K11254] histone H4; [PF00125] Core histone H2A/H2B/H3/H418.760.7414
15 Mapoly0001s0403 [K12832] splicing factor 3B subunit 5; [PF07189] Splicing factor 3B subunit 10 (SF3b10); [PTHR20978:SF0] SUBFAMILY NOT NAMED; [KOG3485] Uncharacterized conserved protein; [PTHR20978] FAMILY NOT NAMED18.970.7688
16 Mapoly0008s0084 [K12622] U6 snRNA-associated Sm-like protein LSm3; [PTHR13110] U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3; [KOG3460] Small nuclear ribonucleoprotein (snRNP) LSM3; [PF01423] LSM domain19.800.7090
17 Mapoly0157s0022 [PTHR13889:SF11] SUBFAMILY NOT NAMED; [K10599] pre-mRNA-processing factor 19 [EC:6.3.2.19]; [PF08606] Prp19/Pso4-like; [GO:0005515] protein binding; [KOG0289] mRNA splicing factor; [6.3.2.19] Ubiquitin--protein ligase.; [PTHR13889] PRE-MRNA SPLICING FACTOR PRP19-RELATED; [PF00400] WD domain, G-beta repeat20.780.7100
18 Mapoly0007s0225 -22.760.6964
19 Mapoly0009s0244 [PTHR13420:SF0] SUBFAMILY NOT NAMED; [PTHR13420] UNCHARACTERIZED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)24.740.6714
20 Mapoly0013s0171 [PTHR30603] RNA POLYMERASE SIGMA FACTOR RPO; [PF03661] Uncharacterised protein family (UPF0121); [GO:0016021] integral to membrane27.220.7207
21 Mapoly0001s0266 [GO:0003677] DNA binding; [PF01192] RNA polymerase Rpb6; [KOG3405] RNA polymerase subunit K; [PTHR10773] DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [K03014] DNA-directed RNA polymerases I, II, and III subunit RPABC227.660.7527
22 Mapoly0013s0162 [GO:0005515] protein binding; [PF02201] SWIB/MDM2 domain; [PTHR13844] BRG-1 ASSOCIATED FACTOR 60 (BAF60)28.110.7464
23 Mapoly0063s0065 [PTHR23177:SF1] MKIAA1688 PROTEIN; [PTHR23177] MKIAA1688 PROTEIN; [PF00784] MyTH4 domain; [GO:0005856] cytoskeleton28.980.6934
24 Mapoly0013s0130 [PF11221] Subunit 21 of Mediator complex; [PTHR13381] RNA POLYMERASE II HOLOENZYME COMPONENT SRB7; [KOG1510] RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB729.500.7065
25 Mapoly0054s0111 [KOG3371] Uncharacterized conserved protein; [PTHR15854] THAP4 PROTEIN; [PF08768] Domain of unknown function (DUF1794)30.330.6897
26 Mapoly0170s0033 [PTHR11669] REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT; [KOG2035] Replication factor C, subunit RFC3; [PF13177] DNA polymerase III, delta subunit; [PTHR11669:SF1] DNA POLYMERASE III SUBUNIT GAMMA/TAU; [PF08542] Replication factor C C-terminal domain; [K10756] replication factor C subunit 3/530.850.7025
27 Mapoly0038s0031 [GO:0005874] microtubule; [PF02970] Tubulin binding cofactor A; [GO:0007021] tubulin complex assembly; [PTHR21500] TUBULIN-SPECIFIC CHAPERONE A; [KOG3470] Beta-tubulin folding cofactor A; [PTHR21500:SF0] SUBFAMILY NOT NAMED; [GO:0051082] unfolded protein binding32.120.7119
28 Mapoly0216s0010 [GO:0043565] sequence-specific DNA binding; [PF00808] Histone-like transcription factor (CBF/NF-Y) and archaeal histone; [PTHR11064] CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED; [GO:0005622] intracellular; [KOG0869] CCAAT-binding factor, subunit A (HAP3)32.170.7323
29 Mapoly0006s0079 [K04798] prefoldin beta subunit; [GO:0016272] prefoldin complex; [PTHR21431] PREFOLDIN SUBUNIT 6; [PTHR21431:SF0] SUBFAMILY NOT NAMED; [GO:0006457] protein folding; [KOG3478] Prefoldin subunit 6, KE2 family; [GO:0051082] unfolded protein binding; [PF01920] Prefoldin subunit37.560.7263
30 Mapoly0006s0194 [PF03145] Seven in absentia protein family; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0005634] nucleus; [PTHR10315] SEVEN IN ABSENTIA HOMOLOG; [GO:0007275] multicellular organismal development; [KOG3002] Zn finger protein39.050.6771
31 Mapoly0014s0198 [2.5.1.-] Transferring alkyl or aryl groups, other than methyl groups.; [PTHR21528:SF0] SUBFAMILY NOT NAMED; [K11778] cis-prenyltransferase, dehydrodolichyl diphosphate synthase [EC:2.5.1.-]; [PTHR21528] UNCHARACTERIZED39.770.6288
32 Mapoly0002s0066 [GO:0006260] DNA replication; [GO:0005634] nucleus; [PF04081] DNA polymerase delta, subunit 4; [PTHR14303] DNA POLYMERASE DELTA SUBUNIT 4; [K03505] DNA polymerase delta subunit 440.890.6510
33 Mapoly0052s0093 [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [PTHR10108] METHYLTRANSFERASE; [PF01209] ubiE/COQ5 methyltransferase family; [K06127] ubiquinone biosynthesis methyltransferase [EC:2.1.1.-]; [PTHR10108:SF24] UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHYLTRANSFERASE; [KOG1540] Ubiquinone biosynthesis methyltransferase COQ541.810.6638
34 Mapoly0111s0006 -43.230.6502
35 Mapoly0029s0061 [GO:0016020] membrane; [PF01956] Integral membrane protein DUF106; [PTHR13116] UNCHARACTERIZED; [KOG3188] Uncharacterized conserved protein44.730.7119
36 Mapoly0004s0008 -44.870.7041
37 Mapoly0001s0064 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [GO:0008173] RNA methyltransferase activity; [PTHR12029] RNA METHYLTRANSFERASE; [KOG0838] RNA Methylase, SpoU family; [PF00588] SpoU rRNA Methylase family46.990.7298
38 Mapoly0056s0015 [PTHR13353:SF7] SUBFAMILY NOT NAMED; [PF01940] Integral membrane protein DUF92; [GO:0016021] integral to membrane; [PTHR13353] FAMILY NOT NAMED; [KOG4491] Predicted membrane protein48.910.6362
39 Mapoly0114s0041 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [KOG0879] U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [K09567] peptidyl-prolyl isomerase H (cyclophilin H) [EC:5.2.1.8]; [PTHR11071:SF58] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H, PPIH48.930.6921
40 Mapoly0014s0106 [KOG3172] Small nuclear ribonucleoprotein Sm D3; [PTHR23338] SMALL NUCLEAR RIBONUCLEOPROTEIN SM; [PF01423] LSM domain49.070.7387
41 Mapoly0001s0452 [KOG0798] Uncharacterized conserved protein; [PTHR13395:SF6] SUBFAMILY NOT NAMED; [PF09724] Uncharacterized conserved protein (DUF2036); [K11271] sister chromatid cohesion protein DCC1; [PTHR13395] SISTER CHROMATID COHESION PROTEIN DCC1-RELATED49.720.6382
42 Mapoly0049s0105 [GO:0016272] prefoldin complex; [KOG4098] Molecular chaperone Prefoldin, subunit 2; [GO:0006457] protein folding; [GO:0051082] unfolded protein binding; [PTHR13303] PREFOLDIN SUBUNIT 2; [PF01920] Prefoldin subunit50.910.6328
43 Mapoly0011s0044 [K03132] transcription initiation factor TFIID subunit 7; [PF04658] TAFII55 protein conserved region; [PTHR12228] TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED; [GO:0005669] transcription factor TFIID complex; [GO:0006367] transcription initiation from RNA polymerase II promoter50.950.6907
44 Mapoly0127s0049 [K04649] ubiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:6.3.2.19]; [GO:0005515] protein binding; [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0418] Ubiquitin-protein ligase; [PF00627] UBA/TS-N domain; [PTHR24067:SF29] UBIQUITIN-CONJUGATING ENZYME E2 K; [PF00179] Ubiquitin-conjugating enzyme51.300.6822
45 Mapoly0032s0020 -53.670.5978
46 Mapoly0056s0045 [PTHR12864] RAN BINDING PROTEIN 9-RELATED; [PF10607] CTLH/CRA C-terminal to LisH motif domain; [KOG2659] LisH motif-containing protein; [PF08513] LisH56.550.6570
47 Mapoly0029s0119 -56.860.6831
48 Mapoly0005s0172 [PTHR24322] FAMILY NOT NAMED; [K04708] 3-dehydrosphinganine reductase [EC:1.1.1.102]; [KOG1210] Predicted 3-ketosphinganine reductase; [1.1.1.102] 3-dehydrosphinganine reductase.; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [PF00106] short chain dehydrogenase57.230.6203
49 Mapoly0027s0072 [PF13716] Divergent CRAL/TRIO domain; [KOG2633] Hismacro and SEC14 domain-containing proteins; [PTHR11106] GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED57.240.6539
50 Mapoly0059s0090 [PTHR15664] C20ORF30 PROTEIN; [PF05915] Eukaryotic protein of unknown function (DUF872); [KOG4753] Predicted membrane protein57.240.6765
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