Guide Gene

Gene ID
Mapoly0002s0066
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0006260] DNA replication; [GO:0005634] nucleus; [PF04081] DNA polymerase delta, subunit 4; [PTHR14303] DNA POLYMERASE DELTA SUBUNIT 4; [K03505] DNA polymerase delta subunit 4

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0002s0066 [GO:0006260] DNA replication; [GO:0005634] nucleus; [PF04081] DNA polymerase delta, subunit 4; [PTHR14303] DNA POLYMERASE DELTA SUBUNIT 4; [K03505] DNA polymerase delta subunit 4 0.00 1.0000
1 Mapoly0032s0009 [PTHR21338] MITOCHONDRIAL RIBOSOMAL PROTEIN L41; [PF09809] Mitochondrial ribosomal protein L271.410.7893
2 Mapoly0086s0024 [GO:0001522] pseudouridine synthesis; [GO:0031429] box H/ACA snoRNP complex; [GO:0042254] ribosome biogenesis; [K11128] H/ACA ribonucleoprotein complex subunit 1; [KOG3262] H/ACA small nucleolar RNP component GAR1; [PF04410] Gar1/Naf1 RNA binding region; [PTHR23237] NUCLEOLAR PROTEIN FAMILY A MEMBER 1 (SNORNP PROTEIN GAR1)8.720.7200
3 Mapoly0049s0059 [KOG0265] U5 snRNP-specific protein-like factor and related proteins; [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [K12857] Prp8 binding protein; [PF00400] WD domain, G-beta repeat11.310.7099
4 Mapoly0005s0254 [GO:0051603] proteolysis involved in cellular protein catabolic process; [KOG0173] 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1; [PTHR11599:SF44] SUBFAMILY NOT NAMED; [GO:0004298] threonine-type endopeptidase activity; [GO:0005839] proteasome core complex; [K02739] 20S proteasome subunit beta 2 [EC:3.4.25.1]; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA12.250.7029
5 Mapoly0061s0071 -13.860.7110
6 Mapoly0158s0026 [PF08547] Complex I intermediate-associated protein 30 (CIA30); [PTHR13194] COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 3015.170.6798
7 Mapoly0182s0007 [GO:0015035] protein disulfide oxidoreductase activity; [GO:0045454] cell redox homeostasis; [PF00085] Thioredoxin; [GO:0006662] glycerol ether metabolic process; [KOG0907] Thioredoxin; [PTHR10438] THIOREDOXIN28.390.6364
8 Mapoly0043s0009 [GO:0005840] ribosome; [GO:0006414] translational elongation; [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [GO:0042254] ribosome biogenesis; [GO:0003735] structural constituent of ribosome; [PTHR21141:SF3] 60S ACIDIC RIBOSOMAL PROTEIN P0; [KOG0815] 60S acidic ribosomal protein P0; [GO:0005622] intracellular; [K02941] large subunit ribosomal protein LP0; [PF00466] Ribosomal protein L10; [PF00428] 60s Acidic ribosomal protein29.100.6959
9 Mapoly0053s0095 [GO:0019773] proteasome core complex, alpha-subunit complex; [GO:0051603] proteolysis involved in cellular protein catabolic process; [PTHR11599:SF15] PROTEASOME SUBUNIT ALPHA TYPE 7; [KOG0183] 20S proteasome, regulatory subunit alpha type PSMA7/PRE6; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0004175] endopeptidase activity; [GO:0004298] threonine-type endopeptidase activity; [PF10584] Proteasome subunit A N-terminal signature; [GO:0005839] proteasome core complex; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [K02731] 20S proteasome subunit alpha 4 [EC:3.4.25.1]; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA31.220.6688
10 Mapoly0010s0212 [KOG3467] Histone H4; [GO:0003677] DNA binding; [PTHR10484] HISTONE H4; [K11254] histone H4; [PF00125] Core histone H2A/H2B/H3/H431.560.7023
11 Mapoly0024s0069 [PF14520] Helix-hairpin-helix domain; [PTHR22942] RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER; [K04482] DNA repair protein RAD51; [PF08423] Rad51; [KOG1433] DNA repair protein RAD51/RHP5532.000.6806
12 Mapoly0016s0011 [GO:0005840] ribosome; [PF00468] Ribosomal protein L34; [GO:0003735] structural constituent of ribosome; [PTHR14503] FAMILY NOT NAMED; [GO:0005622] intracellular; [GO:0006412] translation32.500.6762
13 Mapoly0095s0054 [PTHR23241] LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED32.590.6152
14 Mapoly0021s0078 [KOG0175] 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2; [GO:0051603] proteolysis involved in cellular protein catabolic process; [GO:0004298] threonine-type endopeptidase activity; [GO:0005839] proteasome core complex; [K02737] 20S proteasome subunit beta 5 [EC:3.4.25.1]; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA; [PTHR11599:SF3] PROTEASOME SUBUNIT BETA TYPE 5,833.330.6787
15 Mapoly0080s0084 [GO:0019773] proteasome core complex, alpha-subunit complex; [PTHR11599:SF14] PROTEASOME SUBUNIT ALPHA TYPE 5; [GO:0051603] proteolysis involved in cellular protein catabolic process; [KOG0176] 20S proteasome, regulatory subunit alpha type PSMA5/PUP2; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0004175] endopeptidase activity; [GO:0004298] threonine-type endopeptidase activity; [PF10584] Proteasome subunit A N-terminal signature; [K02729] 20S proteasome subunit alpha 5 [EC:3.4.25.1]; [GO:0005839] proteasome core complex; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA34.600.6502
16 Mapoly0030s0026 [GO:0005840] ribosome; [GO:0003735] structural constituent of ribosome; [PTHR11545:SF6] MITOCHONDRIAL RIBOSOMAL PROTEIN L13; [KOG3203] Mitochondrial/chloroplast ribosomal protein L13; [PTHR11545] RIBOSOMAL PROTEIN L13; [GO:0006412] translation; [PF00572] Ribosomal protein L13; [K02871] large subunit ribosomal protein L1335.550.6675
17 Mapoly0008s0084 [K12622] U6 snRNA-associated Sm-like protein LSm3; [PTHR13110] U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3; [KOG3460] Small nuclear ribonucleoprotein (snRNP) LSM3; [PF01423] LSM domain36.410.6455
18 Mapoly0020s0158 [GO:0005840] ribosome; [GO:0003735] structural constituent of ribosome; [KOG0857] 60s ribosomal protein L10; [PF00252] Ribosomal protein L16p/L10e; [PTHR11726] 60S RIBOSOMAL PROTEIN L10; [GO:0006412] translation; [K02866] large subunit ribosomal protein L10e36.780.5703
19 Mapoly0059s0024 -37.790.6226
20 Mapoly0038s0109 [PTHR11842] MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2; [GO:0007094] mitotic spindle assembly checkpoint; [PF02301] HORMA domain; [K02537] mitotic spindle assembly checkpoint protein MAD2; [PTHR11842:SF11] MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A; [KOG3285] Spindle assembly checkpoint protein39.000.6799
21 Mapoly0109s0026 [GO:0005515] protein binding; [KOG1446] Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2; [PTHR19861] WD40 REPEAT PROTEIN SWD2; [PF00400] WD domain, G-beta repeat40.890.6510
22 Mapoly0053s0014 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [PTHR15316] SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED; [PF01805] Surp module45.830.6480
23 Mapoly0008s0158 [PF07985] SRR147.140.5340
24 Mapoly0065s0034 [GO:0000287] magnesium ion binding; [GO:0004743] pyruvate kinase activity; [GO:0006096] glycolysis; [GO:0030955] potassium ion binding; [PF02887] Pyruvate kinase, alpha/beta domain; [PF00224] Pyruvate kinase, barrel domain; [KOG2323] Pyruvate kinase; [PTHR11817] PYRUVATE KINASE48.510.6754
25 Mapoly0007s0280 [GO:0005737] cytoplasm; [KOG3677] RNA polymerase I-associated factor - PAF67; [GO:0003743] translation initiation factor activity; [GO:0005852] eukaryotic translation initiation factor 3 complex; [PF10255] RNA polymerase I-associated factor PAF67; [PTHR13242] EUKARYOTIC TRANSLATION INITIATION FACTOR 349.820.6345
26 Mapoly0035s0097 [KOG0295] WD40 repeat-containing protein; [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [PF00400] WD domain, G-beta repeat50.670.5565
27 Mapoly0006s0106 [PF04051] Transport protein particle (TRAPP) component; [KOG3330] Transport protein particle (TRAPP) complex subunit; [PTHR13048] TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 351.090.5933
28 Mapoly0001s0158 [GO:0005737] cytoplasm; [PF02544] 3-oxo-5-alpha-steroid 4-dehydrogenase; [1.3.1.-] With NAD(+) or NADP(+) as acceptor.; [GO:0016021] integral to membrane; [K10258] enoyl reductase [EC:1.3.1.-]; [GO:0016627] oxidoreductase activity, acting on the CH-CH group of donors; [PTHR10556:SF28] ENOYL REDUCTASE TSC13-RELATED; [KOG1639] Steroid reductase required for elongation of the very long chain fatty acids; [PTHR10556] 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE; [GO:0006629] lipid metabolic process56.200.6302
29 Mapoly0086s0082 [KOG3391] Transcriptional co-repressor component; [PF06487] Sin3 associated polypeptide p18 (SAP18); [K14324] histone deacetylase complex subunit SAP18; [PTHR13082] SAP1859.980.6698
30 Mapoly0007s0226 [GO:0003677] DNA binding; [KOG1756] Histone 2A; [PTHR23430] HISTONE H2A; [PF00125] Core histone H2A/H2B/H3/H463.070.6645
31 Mapoly0032s0020 -65.170.5632
32 Mapoly0025s0027 [GO:0005840] ribosome; [PF01632] Ribosomal protein L35; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [GO:0006412] translation65.920.6177
33 Mapoly0057s0057 [GO:0055114] oxidation-reduction process; [KOG0856] Predicted pilin-like transcription factor; [GO:0030091] protein repair; [PTHR10173] METHIONINE SULFOXIDE REDUCTASE; [PF01641] SelR domain; [GO:0006979] response to oxidative stress; [GO:0033743] peptide-methionine (R)-S-oxide reductase activity; [GO:0016671] oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor66.320.5967
34 Mapoly0103s0006 [PTHR10830:SF0] DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT; [GO:0004579] dolichyl-diphosphooligosaccharide-protein glycotransferase activity; [PF03345] Oligosaccharyltransferase 48 kDa subunit beta; [K12670] oligosaccharyltransferase complex subunit beta; [GO:0018279] protein N-linked glycosylation via asparagine; [KOG2754] Oligosaccharyltransferase, beta subunit; [PTHR10830] DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT; [GO:0005789] endoplasmic reticulum membrane70.460.6053
35 Mapoly0001s0495 [PF14368] Probable lipid transfer70.750.6055
36 Mapoly0097s0065 [PTHR15350:SF2] COP9 SIGNALOSOME COMPLEX SUBUNIT 7; [GO:0005515] protein binding; [PF01399] PCI domain; [PTHR15350] COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17; [KOG2753] Uncharacterized conserved protein, contains PCI domain71.690.6508
37 Mapoly0009s0045 [PTHR10741] TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X; [GO:0043565] sequence-specific DNA binding; [KOG3067] Translin family protein; [PF01997] Translin family; [PTHR10741:SF2] TRANSLIN72.930.6386
38 Mapoly0149s0014 [GO:0005737] cytoplasm; [GO:0003743] translation initiation factor activity; [GO:0005515] protein binding; [PTHR10410:SF3] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H; [PF01398] JAB1/Mov34/MPN/PAD-1 ubiquitin protease; [K03247] translation initiation factor eIF-3 subunit 3; [KOG1560] Translation initiation factor 3, subunit h (eIF-3h); [PTHR10410] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED; [GO:0005852] eukaryotic translation initiation factor 3 complex74.140.6486
39 Mapoly0014s0198 [2.5.1.-] Transferring alkyl or aryl groups, other than methyl groups.; [PTHR21528:SF0] SUBFAMILY NOT NAMED; [K11778] cis-prenyltransferase, dehydrodolichyl diphosphate synthase [EC:2.5.1.-]; [PTHR21528] UNCHARACTERIZED74.300.5714
40 Mapoly0027s0032 -75.300.6276
41 Mapoly0045s0073 [PTHR11662] SODIUM-DEPENDENT PHOSPHATE TRANSPORTERS; [GO:0016021] integral to membrane; [KOG2532] Permease of the major facilitator superfamily; [GO:0055085] transmembrane transport; [PF07690] Major Facilitator Superfamily77.090.5054
42 Mapoly0088s0010 [KOG4199] Uncharacterized conserved protein; [PF00514] Armadillo/beta-catenin-like repeat; [GO:0005515] protein binding; [PTHR22895] UNCHARACTERIZED78.500.5994
43 Mapoly0081s0079 [PTHR13305:SF0] SUBFAMILY NOT NAMED; [GO:0001522] pseudouridine synthesis; [GO:0042254] ribosome biogenesis; [PTHR13305] RIBOSOME BIOGENESIS PROTEIN NOP10; [GO:0030515] snoRNA binding; [KOG3503] H/ACA snoRNP complex, subunit NOP10; [K11130] H/ACA ribonucleoprotein complex subunit 3; [PF04135] Nucleolar RNA-binding protein, Nop10p family; [GO:0072588] box H/ACA RNP complex79.870.6500
44 Mapoly0058s0062 [GO:0032502] developmental process; [PF00022] Actin; [GO:0005634] nucleus; [GO:0006325] chromatin organization; [PTHR11937] ACTIN; [KOG0676] Actin and related proteins80.250.5414
45 Mapoly0026s0002 [GO:0005840] ribosome; [PTHR13528] 39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [GO:0006412] translation; [PF00830] Ribosomal L28 family80.680.6342
46 Mapoly0014s0106 [KOG3172] Small nuclear ribonucleoprotein Sm D3; [PTHR23338] SMALL NUCLEAR RIBONUCLEOPROTEIN SM; [PF01423] LSM domain84.320.6563
47 Mapoly0007s0080 [GO:0003677] DNA binding; [KOG1756] Histone 2A; [PTHR23430] HISTONE H2A; [PF00125] Core histone H2A/H2B/H3/H487.090.6480
48 Mapoly0054s0132 [GO:0003677] DNA binding; [K03007] DNA-directed RNA polymerases I, II, and III subunit RPABC5; [PF01194] RNA polymerases N / 8 kDa subunit; [GO:0006351] transcription, DNA-dependent; [KOG3497] DNA-directed RNA polymerase, subunit RPB10; [GO:0003899] DNA-directed RNA polymerase activity; [PTHR23413] 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N89.240.6277
49 Mapoly0098s0009 [K01104] protein-tyrosine phosphatase [EC:3.1.3.48]; [PF00581] Rhodanese-like domain; [PTHR10828:SF17] M-PHASE INDUCER PHOSPHATASE (DUAL SPECIFICITY PHOSPHATASE CDC25); [PTHR10828] M-PHASE INDUCER PHOSPHATASE (DUAL SPECIFICITY PHOSPHATASE CDC25); [3.1.3.48] Protein-tyrosine-phosphatase.89.790.6373
50 Mapoly0145s0029 -89.980.6362
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