Guide Gene

Gene ID
Mapoly0062s0069
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF13812] Pentatricopeptide repeat domain; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0062s0069 [PF13812] Pentatricopeptide repeat domain; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 0.00 1.0000
1 Mapoly0002s0313 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family1.410.8649
2 Mapoly0006s0092 [PTHR24012] FAMILY NOT NAMED; [KOG0131] Splicing factor 3b, subunit 4; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)2.450.8533
3 Mapoly0128s0026 [GO:0005840] ribosome; [K02961] small subunit ribosomal protein S17; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [KOG1740] Predicted mitochondrial/chloroplast ribosomal protein S17; [PF00366] Ribosomal protein S17; [GO:0006412] translation; [PTHR10744] 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER3.870.8074
4 Mapoly0112s0008 [GO:0005737] cytoplasm; [GO:0003743] translation initiation factor activity; [PTHR12399] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7; [KOG2479] Translation initiation factor 3, subunit d (eIF-3d); [K03251] translation initiation factor eIF-3 subunit 7; [PF05091] Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); [GO:0005852] eukaryotic translation initiation factor 3 complex5.480.8463
5 Mapoly0014s0186 [GO:0016020] membrane; [PTHR23222] PROHIBITIN; [KOG3090] Prohibitin-like protein; [PF01145] SPFH domain / Band 7 family6.000.8059
6 Mapoly0090s0014 [GO:0008168] methyltransferase activity; [PTHR11006] PROTEIN ARGININE N-METHYLTRANSFERASE; [GO:0006479] protein methylation; [PTHR11006:SF21] PREDICTED: HYPOTHETICAL PROTEIN; [KOG1499] Protein arginine N-methyltransferase PRMT1 and related enzymes; [PF05185] PRMT5 arginine-N-methyltransferase6.930.8044
7 Mapoly0040s0040 [GO:0016020] membrane; [PTHR23222] PROHIBITIN; [KOG3083] Prohibitin; [PF01145] SPFH domain / Band 7 family10.950.7945
8 Mapoly0011s0012 [GO:0016020] membrane; [KOG2620] Prohibitins and stomatins of the PID superfamily; [PTHR10264] BAND 7 PROTEIN-RELATED; [PTHR10264:SF27] UNCHARACTERIZED; [PF01145] SPFH domain / Band 7 family12.000.7879
9 Mapoly0084s0068 [PTHR10971] MRNA EXPORT FACTOR AND BUB3; [GO:0005515] protein binding; [K14298] mRNA export factor; [PTHR10971:SF11] MRNA EXPORT FACTOR; [PF00400] WD domain, G-beta repeat; [KOG0647] mRNA export protein (contains WD40 repeats)13.080.8012
10 Mapoly0046s0093 [GO:0005840] ribosome; [PF01084] Ribosomal protein S18; [PTHR13479] 30S RIBOSOMAL PROTEIN S18; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [GO:0006412] translation14.700.7618
11 Mapoly0037s0098 [KOG3089] Predicted DEAD-box-containing helicase; [PTHR24030] FAMILY NOT NAMED; [PF14617] U3-containing 90S pre-ribosomal complex subunit15.870.8102
12 Mapoly0034s0066 [GO:0005840] ribosome; [PTHR21349] 50S RIBOSOMAL PROTEIN L21; [KOG1686] Mitochondrial/chloroplast ribosomal L21 protein; [PF00829] Ribosomal prokaryotic L21 protein17.150.7587
13 Mapoly0107s0028 [GO:0008168] methyltransferase activity; [PF00590] Tetrapyrrole (Corrin/Porphyrin) Methylases; [PTHR10882:SF0] DIPHTHINE SYNTHASE; [GO:0008152] metabolic process; [PTHR10882] DIPHTHINE SYNTHASE; [2.1.1.98] Diphthine synthase.; [K00586] diphthine synthase [EC:2.1.1.98]; [KOG3123] Diphthine synthase21.210.7784
14 Mapoly0044s0007 [KOG2971] RNA-binding protein required for biogenesis of the ribosomal 60S subunit; [PTHR13634] RIBOSOME BIOGENESIS PROTEIN BRIX; [PF04427] Brix domain22.250.7978
15 Mapoly0098s0036 [GO:0005840] ribosome; [GO:0003723] RNA binding; [PTHR13718] RIBOSOMAL S SUBUNIT; [PF00333] Ribosomal protein S5, N-terminal domain; [GO:0003735] structural constituent of ribosome; [GO:0006412] translation; [PF03719] Ribosomal protein S5, C-terminal domain23.090.7937
16 Mapoly0070s0010 [PTHR10721] MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44; [PF04280] Tim44-like domain; [KOG2580] Mitochondrial import inner membrane translocase, subunit TIM4423.920.7564
17 Mapoly0035s0098 -24.740.7633
18 Mapoly0031s0027 [GO:0003723] RNA binding; [PF01985] CRS1 / YhbY (CRM) domain; [PTHR31426] FAMILY NOT NAMED24.900.8009
19 Mapoly0173s0007 [GO:0005515] protein binding; [PTHR10855:SF1] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12; [KOG1498] 26S proteasome regulatory complex, subunit RPN5/PSMD12; [K03035] 26S proteasome regulatory subunit N5; [PF01399] PCI domain; [PTHR10855] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 424.980.7598
20 Mapoly0079s0015 [PTHR11778] SERYL-TRNA SYNTHETASE; [GO:0005524] ATP binding; [GO:0004828] serine-tRNA ligase activity; [K01875] seryl-tRNA synthetase [EC:6.1.1.11]; [GO:0005737] cytoplasm; [GO:0006434] seryl-tRNA aminoacylation; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [KOG2509] Seryl-tRNA synthetase; [PF02403] Seryl-tRNA synthetase N-terminal domain; [GO:0000166] nucleotide binding; [PTHR11778:SF0] SUBFAMILY NOT NAMED; [6.1.1.11] Serine--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity28.250.7893
21 Mapoly0051s0055 [PTHR18359] WD-REPEAT PROTEIN-RELATED; [GO:0005515] protein binding; [KOG2055] WD40 repeat protein; [K14553] U3 small nucleolar RNA-associated protein 18; [PF00400] WD domain, G-beta repeat28.500.8053
22 Mapoly0002s0206 [PF10213] Mitochondrial ribosomal subunit protein; [PTHR13490] MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S2829.850.7214
23 Mapoly0026s0011 [PF13812] Pentatricopeptide repeat domain; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family30.590.7334
24 Mapoly0156s0015 [GO:0005524] ATP binding; [KOG0361] Chaperonin complex component, TCP-1 eta subunit (CCT7); [GO:0044267] cellular protein metabolic process; [PTHR11353] CHAPERONIN; [PF00118] TCP-1/cpn60 chaperonin family; [PTHR11353:SF22] CHAPERONIN CONTAINING T-COMPLEX PROTEIN 1, ETA SUBUNIT, TCPH; [GO:0006457] protein folding; [GO:0051082] unfolded protein binding31.980.7669
25 Mapoly0069s0022 [PF04097] Nup93/Nic96; [GO:0005643] nuclear pore; [KOG2168] Cullins; [PTHR11225] NUCLEAR PORE COMPLEX PROTEIN NUP93 (NUCLEOPORIN NUP93) (DEAD EYE PROTEIN); [K14309] nuclear pore complex protein Nup93; [GO:0006810] transport32.310.7861
26 Mapoly0168s0006 [KOG4836] Uncharacterized conserved protein; [GO:0005744] mitochondrial inner membrane presequence translocase complex; [PF08294] TIM21; [PTHR13032] FAMILY NOT NAMED; [GO:0030150] protein import into mitochondrial matrix34.470.7142
27 Mapoly0087s0082 [PF12298] Eukaryotic mitochondrial regulator protein34.580.7254
28 Mapoly0062s0065 [GO:0005524] ATP binding; [PTHR24031:SF96] LOC553462 PROTEIN (FRAGMENT); [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [KOG0346] RNA helicase34.930.7841
29 Mapoly0028s0042 [GO:0005515] protein binding; [PF13414] TPR repeat; [KOG4412] 26S proteasome regulatory complex, subunit PSMD10; [PTHR22904:SF145] PROTEIN DIA2; [PF00515] Tetratricopeptide repeat; [PF12796] Ankyrin repeats (3 copies); [PTHR22904] TPR REPEAT CONTAINING PROTEIN37.950.6897
30 Mapoly0032s0093 [PF02096] 60Kd inner membrane protein; [KOG1239] Inner membrane protein translocase involved in respiratory chain assembly; [K03217] preprotein translocase subunit YidC; [GO:0016021] integral to membrane; [PTHR12428] OXA1; [GO:0051205] protein insertion into membrane38.210.7332
31 Mapoly0009s0112 [GO:0005524] ATP binding; [K03064] 26S proteasome regulatory subunit T4; [PTHR23073] 26S PROTEASE REGULATORY SUBUNIT; [KOG0651] 26S proteasome regulatory complex, ATPase RPT4; [PF00004] ATPase family associated with various cellular activities (AAA)38.570.7253
32 Mapoly0113s0055 [KOG2155] Tubulin-tyrosine ligase-related protein; [PTHR12241] TUBULIN TYROSINE LIGASE-RELATED; [PF03133] Tubulin-tyrosine ligase family; [GO:0006464] cellular protein modification process; [PTHR12241:SF13] SUBFAMILY NOT NAMED40.300.7745
33 Mapoly0143s0027 [PTHR22851] U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEIN; [PTHR22851:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [KOG0268] Sof1-like rRNA processing protein (contains WD40 repeats); [K11806] WD repeat and SOF domain-containing protein 1; [PF04158] Sof1-like domain; [PF00400] WD domain, G-beta repeat41.260.7825
34 Mapoly0168s0007 [PTHR10252:SF25] SUBFAMILY NOT NAMED; [GO:0043565] sequence-specific DNA binding; [PF00808] Histone-like transcription factor (CBF/NF-Y) and archaeal histone; [GO:0005622] intracellular; [PTHR10252] HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED41.500.7304
35 Mapoly0153s0027 [PTHR22889] UNCHARACTERIZED; [KOG1188] WD40 repeat protein; [GO:0005515] protein binding; [PF00400] WD domain, G-beta repeat44.160.7784
36 Mapoly0007s0138 [PF08492] SRP72 RNA-binding domain; [PF13371] Tetratricopeptide repeat; [GO:0048500] signal recognition particle; [KOG2376] Signal recognition particle, subunit Srp72; [GO:0008312] 7S RNA binding; [PTHR14094:SF9] SIGNAL RECOGNITION PARTICLE 72; [GO:0006614] SRP-dependent cotranslational protein targeting to membrane; [K03108] signal recognition particle subunit SRP72; [PTHR14094] SIGNAL RECOGNITION PARTICLE 7244.180.7665
37 Mapoly0065s0028 [GO:0005840] ribosome; [PF00312] Ribosomal protein S15; [PTHR23321] RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [GO:0006412] translation44.400.7769
38 Mapoly0063s0055 [GO:0003677] DNA binding; [K03005] DNA-directed RNA polymerase I subunit RPA49; [GO:0005634] nucleus; [PTHR14440] FAMILY NOT NAMED; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [2.7.7.6] DNA-directed RNA polymerase.; [KOG4183] RNA polymerase I 49 kDa subunit; [PF06870] A49-like RNA polymerase I associated factor44.980.7863
39 Mapoly0122s0044 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family46.310.7408
40 Mapoly0031s0129 [K14561] U3 small nucleolar ribonucleoprotein protein IMP4; [KOG2781] U3 small nucleolar ribonucleoprotein (snoRNP) component; [PTHR22734] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4; [PF04427] Brix domain48.280.7838
41 Mapoly0029s0089 [PTHR12184] BASIC FGF-REPRESSED ZIC BINDING PROTEIN HOMOLOG (ZIC3-BINDING PROTEIN); [PF03981] Ubiquinol-cytochrome C chaperone; [PTHR12184:SF1] ZIC3 BINDING PROTEIN-RELATED49.990.6950
42 Mapoly0031s0031 [GO:0005840] ribosome; [PF00861] Ribosomal L18p/L5e family; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PTHR12899] 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL; [GO:0006412] translation50.010.7397
43 Mapoly0001s0129 [PTHR19858] WD40 REPEAT PROTEIN; [KOG0291] WD40-repeat-containing subunit of the 18S rRNA processing complex; [GO:0005515] protein binding; [PF04003] Dip2/Utp12 Family; [K14558] periodic tryptophan protein 2; [PF00400] WD domain, G-beta repeat50.200.7883
44 Mapoly0045s0033 [PTHR16199] FAMILY NOT NAMED; [K11492] condensin-2 complex subunit G2; [GO:0005634] nucleus; [PF12422] Condensin II non structural maintenance of chromosomes subunit50.410.7092
45 Mapoly0007s0105 [PF04280] Tim44-like domain52.540.7092
46 Mapoly0009s0077 [PTHR14927:SF0] SUBFAMILY NOT NAMED; [KOG2321] WD40 repeat protein; [PTHR14927] UNCHARACTERIZED; [GO:0005634] nucleus; [PF08159] NUC153 domain53.270.7831
47 Mapoly0001s0278 [PF03690] Uncharacterised protein family (UPF0160); [PTHR11215:SF0] SUBFAMILY NOT NAMED; [KOG2948] Predicted metal-binding protein; [PTHR11215] METAL DEPENDENT HYDROLASE - RELATED54.500.7734
48 Mapoly0078s0032 [PF06325] Ribosomal protein L11 methyltransferase (PrmA); [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [GO:0005737] cytoplasm; [K11434] protein arginine N-methyltransferase 1 [EC:2.1.1.-]; [PTHR11006] PROTEIN ARGININE N-METHYLTRANSFERASE; [GO:0008276] protein methyltransferase activity; [GO:0006479] protein methylation; [KOG1499] Protein arginine N-methyltransferase PRMT1 and related enzymes54.740.7609
49 Mapoly0013s0057 [PTHR23105] RIBOSOMAL PROTEIN L7AE FAMILY MEMBER; [KOG3167] Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation; [PF01248] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; [K11129] H/ACA ribonucleoprotein complex subunit 2; [PTHR23105:SF12] NUCLEOLAR PROTEIN FAMILY A MEMBER 257.300.7527
50 Mapoly0004s0269 [GO:0048500] signal recognition particle; [K03105] signal recognition particle subunit SRP19; [KOG3198] Signal recognition particle, subunit Srp19; [PTHR17453] SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN; [GO:0008312] 7S RNA binding; [PF01922] SRP19 protein; [GO:0006614] SRP-dependent cotranslational protein targeting to membrane; [PTHR17453:SF0] SUBFAMILY NOT NAMED57.860.6761
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