Guide Gene

Gene ID
Mapoly0031s0129
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[K14561] U3 small nucleolar ribonucleoprotein protein IMP4; [KOG2781] U3 small nucleolar ribonucleoprotein (snoRNP) component; [PTHR22734] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4; [PF04427] Brix domain

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0031s0129 [K14561] U3 small nucleolar ribonucleoprotein protein IMP4; [KOG2781] U3 small nucleolar ribonucleoprotein (snoRNP) component; [PTHR22734] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4; [PF04427] Brix domain 0.00 1.0000
1 Mapoly0037s0098 [KOG3089] Predicted DEAD-box-containing helicase; [PTHR24030] FAMILY NOT NAMED; [PF14617] U3-containing 90S pre-ribosomal complex subunit1.000.9210
2 Mapoly0074s0052 [KOG3237] Uncharacterized conserved protein; [PTHR12838] U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11; [GO:0006364] rRNA processing; [GO:0032040] small-subunit processome; [PF03998] Utp11 protein3.160.8991
3 Mapoly0006s0099 [PTHR13261] CDK INHIBITOR P21 BINDING PROTEIN; [KOG3034] Isoamyl acetate-hydrolyzing esterase and related enzymes; [PF13862] p21-C-terminal region-binding protein4.470.8792
4 Mapoly0077s0037 [PTHR17039] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10; [PF04006] Mpp10 protein; [KOG2600] U3 small nucleolar ribonucleoprotein (snoRNP) subunit - Mpp10p; [K14559] U3 small nucleolar RNA-associated protein MPP105.740.8917
5 Mapoly0005s0264 [PF03725] 3' exoribonuclease family, domain 2; [PTHR11097] EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN); [KOG1614] Exosomal 3'-5' exoribonuclease complex, subunit Rrp45; [PF01138] 3' exoribonuclease family, domain 15.920.8811
6 Mapoly0110s0002 [PTHR13296:SF0] SUBFAMILY NOT NAMED; [K12861] pre-mRNA-splicing factor SPF27; [KOG3096] Spliceosome-associated coiled-coil protein; [PTHR13296] BCAS2 PROTEIN; [GO:0006397] mRNA processing; [PF05700] Breast carcinoma amplified sequence 2 (BCAS2)6.000.8818
7 Mapoly0143s0027 [PTHR22851] U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEIN; [PTHR22851:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [KOG0268] Sof1-like rRNA processing protein (contains WD40 repeats); [K11806] WD repeat and SOF domain-containing protein 1; [PF04158] Sof1-like domain; [PF00400] WD domain, G-beta repeat6.480.8737
8 Mapoly0097s0041 [PTHR12661] PETER PAN-RELATED; [PTHR12661:SF5] SUBFAMILY NOT NAMED; [KOG2963] RNA-binding protein required for 60S ribosomal subunit biogenesis; [PF04427] Brix domain6.630.8840
9 Mapoly0045s0079 [PTHR12818:SF0] SUBFAMILY NOT NAMED; [PF01980] Uncharacterised protein family UPF0066; [KOG2942] Uncharacterized conserved protein; [PTHR12818] UNCHARACTERIZED7.350.8575
10 Mapoly0153s0027 [PTHR22889] UNCHARACTERIZED; [KOG1188] WD40 repeat protein; [GO:0005515] protein binding; [PF00400] WD domain, G-beta repeat7.750.8636
11 Mapoly0053s0094 [K07442] tRNA (adenine-N1-)-methyltransferase catalytic subunit [EC:2.1.1.36]; [GO:0031515] tRNA (m1A) methyltransferase complex; [GO:0030488] tRNA methylation; [PTHR12133] UNCHARACTERIZED METHYLTRANSFERASE; [PTHR12133:SF2] UNCHARACTERIZED METHYLTRANSFERASE; [2.1.1.36] Transferred entry: 2.1.1.217, 2.1.1.218, 2.1.1.219 and 2.1.1.220.; [PF08704] tRNA methyltransferase complex GCD14 subunit; [GO:0016429] tRNA (adenine-N1-)-methyltransferase activity; [KOG2915] tRNA(1-methyladenosine) methyltransferase, subunit GCD1410.000.8586
12 Mapoly0044s0007 [KOG2971] RNA-binding protein required for biogenesis of the ribosomal 60S subunit; [PTHR13634] RIBOSOME BIOGENESIS PROTEIN BRIX; [PF04427] Brix domain10.580.8724
13 Mapoly0063s0055 [GO:0003677] DNA binding; [K03005] DNA-directed RNA polymerase I subunit RPA49; [GO:0005634] nucleus; [PTHR14440] FAMILY NOT NAMED; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [2.7.7.6] DNA-directed RNA polymerase.; [KOG4183] RNA polymerase I 49 kDa subunit; [PF06870] A49-like RNA polymerase I associated factor10.820.8772
14 Mapoly0001s0129 [PTHR19858] WD40 REPEAT PROTEIN; [KOG0291] WD40-repeat-containing subunit of the 18S rRNA processing complex; [GO:0005515] protein binding; [PF04003] Dip2/Utp12 Family; [K14558] periodic tryptophan protein 2; [PF00400] WD domain, G-beta repeat12.450.8839
15 Mapoly0006s0036 [KOG3164] Uncharacterized proteins of PilT N-term./Vapc superfamily; [PF04900] Fcf1; [PTHR12416] UNCHARACTERIZED; [GO:0032040] small-subunit processome12.960.8599
16 Mapoly0006s0064 [PTHR23002] ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN; [PF14392] Zinc knuckle; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [GO:0003676] nucleic acid binding14.070.8503
17 Mapoly0051s0055 [PTHR18359] WD-REPEAT PROTEIN-RELATED; [GO:0005515] protein binding; [KOG2055] WD40 repeat protein; [K14553] U3 small nucleolar RNA-associated protein 18; [PF00400] WD domain, G-beta repeat14.070.8785
18 Mapoly0012s0170 [GO:0005515] protein binding; [PTHR19865] U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2; [PTHR19865:SF0] SUBFAMILY NOT NAMED; [KOG0299] U3 snoRNP-associated protein (contains WD40 repeats); [PF00400] WD domain, G-beta repeat14.420.8811
19 Mapoly0167s0009 [GO:0005524] ATP binding; [KOG0348] ATP-dependent RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031:SF89] ATP-INDEPENDENT RNA HELICASE; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF13959] Domain of unknown function (DUF4217)15.100.8093
20 Mapoly0050s0095 [KOG1069] Exosomal 3'-5' exoribonuclease complex, subunit Rrp46; [PTHR11953:SF1] RIBONUCLEASE PH-RELATED; [K12590] exosome complex component RRP46; [PTHR11953] RIBONUCLEASE PH RELATED; [PF01138] 3' exoribonuclease family, domain 115.300.7815
21 Mapoly0041s0094 [3.1.26.5] Ribonuclease P.; [PTHR13031] RIBONUCLEASE P-RELATED; [K03539] ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]; [KOG2363] Protein subunit of nuclear ribonuclease P (RNase P); [GO:0008033] tRNA processing; [PF01876] RNase P subunit p30; [GO:0004540] ribonuclease activity15.430.8709
22 Mapoly0122s0042 [KOG2885] Uncharacterized conserved protein; [PTHR14369] SURFEIT LOCUS PROTEIN 6; [PF04935] Surfeit locus protein 6; [PF15459] 60S ribosome biogenesis protein Rrp14; [PTHR14369:SF0] SUBFAMILY NOT NAMED15.560.8609
23 Mapoly0041s0093 [PF09368] Sas10 C-terminal domain; [PF04000] Sas10/Utp3/C1D family; [PTHR13237] SOMETHING ABOUT SILENCING PROTEIN 10-RELATED; [KOG3118] Disrupter of silencing SAS1016.160.8808
24 Mapoly0064s0065 [PF13656] RNA polymerase Rpb3/Rpb11 dimerisation domain; [PTHR13946:SF16] DNA-DIRECTED RNA POLYMERASE II 13.3 KDA POLYPEPTIDE; [PTHR13946] DNA-DIRECTED RNA POLYMERASE I,II,III; [KOG3438] DNA-directed RNA polymerase, subunit L; [2.7.7.6] DNA-directed RNA polymerase.; [K03020] DNA-directed RNA polymerases I and III subunit RPAC216.430.8355
25 Mapoly0115s0026 [KOG4134] DNA-dependent RNA polymerase I; [PTHR12709] DNA-DIRECTED RNA POLYMERASE II, III17.320.8736
26 Mapoly0007s0196 [KOG4655] U3 small nucleolar ribonucleoprotein (snoRNP) component; [GO:0003723] RNA binding; [PTHR11831:SF1] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3; [PTHR11831] 30S 40S RIBOSOMAL PROTEIN; [GO:0019843] rRNA binding; [PF00163] Ribosomal protein S4/S9 N-terminal domain; [GO:0005622] intracellular; [K14560] U3 small nucleolar ribonucleoprotein protein IMP3; [PF01479] S4 domain18.000.7860
27 Mapoly0029s0122 [PTHR15565:SF0] PROTEIN AATF (APOPTOSIS-ANTAGONIZING TRANSCRIPTION FACTOR); [PF13339] Apoptosis antagonizing transcription factor; [GO:0005634] nucleus; [KOG2773] Apoptosis antagonizing transcription factor/protein transport protein; [PTHR15565] AATF PROTEIN (APOPTOSIS ANTAGONIZING TRANSCRIPTION FACTOR); [PF08164] Apoptosis-antagonizing transcription factor, C-terminal18.000.8784
28 Mapoly0098s0050 [KOG3031] Protein required for biogenesis of the ribosomal 60S subunit; [PTHR12728] BRIX DOMAIN CONTAINING PROTEIN; [PTHR12728:SF0] SUBFAMILY NOT NAMED; [PF04427] Brix domain18.890.8333
29 Mapoly0063s0083 [KOG3492] Ribosome biogenesis protein NIP7; [K07565] 60S ribosome subunit biogenesis protein NIP7; [PF03657] Uncharacterised protein family (UPF0113); [PTHR23415:SF4] 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7; [PTHR23415] CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP719.100.8122
30 Mapoly0001s0278 [PF03690] Uncharacterised protein family (UPF0160); [PTHR11215:SF0] SUBFAMILY NOT NAMED; [KOG2948] Predicted metal-binding protein; [PTHR11215] METAL DEPENDENT HYDROLASE - RELATED19.420.8541
31 Mapoly0009s0116 [PTHR12072] CWF19, CELL CYCLE CONTROL PROTEIN; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12072:SF4] SUBFAMILY NOT NAMED; [PF04677] Protein similar to CwfJ C-terminus 1; [GO:0046872] metal ion binding; [PF04676] Protein similar to CwfJ C-terminus 219.600.8182
32 Mapoly0001s0498 [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [KOG0294] WD40 repeat-containing protein; [PF00400] WD domain, G-beta repeat19.770.8609
33 Mapoly0002s0245 [K06961] ribosomal RNA assembly protein; [KOG2874] rRNA processing protein; [PTHR12581] HIV-1 REV BINDING PROTEIN 2, 319.970.8629
34 Mapoly0060s0029 [PF15370] Domain of unknown function (DUF4598)20.300.7892
35 Mapoly0049s0075 [KOG3925] Uncharacterized conserved protein; [PTHR12150:SF13] UNCHARACTERIZED; [PF02598] Putative RNA methyltransferase; [PTHR12150] UNCHARACTERIZED20.780.8449
36 Mapoly0058s0026 [PTHR13191] RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED; [PF12923] Ribosomal RNA-processing protein 7 (RRP7); [K14545] ribosomal RNA-processing protein 721.540.8215
37 Mapoly0050s0121 [KOG1416] tRNA(1-methyladenosine) methyltransferase, subunit GCD10; [GO:0003743] translation initiation factor activity; [PTHR12945] TRANSLATION INITIATION FACTOR EIF3-RELATED; [K03256] tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit; [GO:0006413] translational initiation; [PF04189] Gcd10p family21.820.8548
38 Mapoly0002s0233 [GO:0008168] methyltransferase activity; [KOG2899] Predicted methyltransferase; [PF06859] Bicoid-interacting protein 3 (Bin3); [PTHR12315:SF0] SUBFAMILY NOT NAMED; [PTHR12315] BICOID-INTERACTING PROTEIN RELATED22.360.7746
39 Mapoly0032s0043 [PF03725] 3' exoribonuclease family, domain 2; [PTHR11097:SF8] EXOSOME COMPLEX EXONUCLEASE RRP45 (POLYMYOSITIS/SCLERODERMA AUTOANTIGEN 1) (RIBOSOMAL RNA PROCESSING PROTEIN 45); [KOG1612] Exosomal 3'-5' exoribonuclease complex, subunit Rrp42; [PTHR11097] EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN); [PF01138] 3' exoribonuclease family, domain 1; [K12589] exosome complex component RRP4223.240.7990
40 Mapoly0082s0024 [PF08149] BING4CT (NUC141) domain; [GO:0005515] protein binding; [KOG1272] WD40-repeat-containing subunit of the 18S rRNA processing complex; [PTHR14085] WD-REPEAT PROTEIN BING4; [PTHR14085:SF3] SUBFAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat24.490.8537
41 Mapoly0057s0032 [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [PTHR22807:SF4] WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN 20; [PF01189] NOL1/NOP2/sun family; [KOG2360] Proliferation-associated nucleolar protein (NOL1)24.900.8533
42 Mapoly0091s0022 [KOG1521] RNA polymerase I and III, subunit RPA40/RPC40; [GO:0046983] protein dimerization activity; [PTHR11800:SF13] DNA-DIRECTED RNA POLYMERASE I; [PF01000] RNA polymerase Rpb3/RpoA insert domain; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PTHR11800] DNA-DIRECTED RNA POLYMERASE; [PF01193] RNA polymerase Rpb3/Rpb11 dimerisation domain25.690.8193
43 Mapoly0061s0104 [KOG3064] RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger; [PTHR23405:SF4] MAINTENANCE OF KILLER 16 (MAK16) PROTEIN; [PF01778] Ribosomal L28e protein family; [PF04874] Mak16 protein C-terminal region; [PTHR23405] MAINTENANCE OF KILLER 16 (MAK16) PROTEIN-RELATED27.040.8375
44 Mapoly0009s0198 [GO:0003723] RNA binding; [PTHR14911] FAMILY NOT NAMED; [PF02926] THUMP domain; [PF01170] Putative RNA methylase family UPF002027.330.8037
45 Mapoly0032s0165 [PF12847] Methyltransferase domain; [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [K11436] protein arginine N-methyltransferase 3 [EC:2.1.1.-]; [PTHR11006] PROTEIN ARGININE N-METHYLTRANSFERASE; [GO:0006479] protein methylation; [KOG1499] Protein arginine N-methyltransferase PRMT1 and related enzymes27.460.8582
46 Mapoly0002s0051 [PF03205] Molybdopterin guanine dinucleotide synthesis protein B; [PTHR12755] CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P; [PF06807] Pre-mRNA cleavage complex II protein Clp128.250.8439
47 Mapoly0132s0039 [KOG2780] Ribosome biogenesis protein RPF1, contains IMP4 domain; [PTHR22734:SF1] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4; [PTHR22734] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4; [PF04427] Brix domain28.270.8353
48 Mapoly0036s0028 [PF04939] Ribosome biogenesis regulatory protein (RRS1); [KOG1765] Regulator of ribosome synthesis; [GO:0042254] ribosome biogenesis; [GO:0005634] nucleus; [PTHR17602] RIBOSOME BIOGENESIS REGULATORY PROTEIN29.660.8396
49 Mapoly0043s0054 [PF03914] CBF/Mak21 family; [PTHR12455] NUCLEOLAR COMPLEX PROTEIN 4; [GO:0042254] ribosome biogenesis; [KOG2154] Predicted nucleolar protein involved in ribosome biogenesis; [PTHR12455:SF0] SUBFAMILY NOT NAMED30.000.8666
50 Mapoly0007s0029 [KOG3165] Predicted nucleic-acid-binding protein, contains PIN domain; [PF04900] Fcf1; [PTHR12416] UNCHARACTERIZED; [GO:0032040] small-subunit processome; [K14566] U3 small nucleolar RNA-associated protein 2431.180.8039
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