Guide Gene
- Gene ID
- Mapoly0007s0029
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [KOG3165] Predicted nucleic-acid-binding protein, contains PIN domain; [PF04900] Fcf1; [PTHR12416] UNCHARACTERIZED; [GO:0032040] small-subunit processome; [K14566] U3 small nucleolar RNA-associated protein 24
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0007s0029 [KOG3165] Predicted nucleic-acid-binding protein, contains PIN domain; [PF04900] Fcf1; [PTHR12416] UNCHARACTERIZED; [GO:0032040] small-subunit processome; [K14566] U3 small nucleolar RNA-associated protein 24 0.00 1.0000 1 Mapoly0002s0326 [GO:0003922] GMP synthase (glutamine-hydrolyzing) activity; [GO:0005524] ATP binding; [PF00958] GMP synthase C terminal domain; [6.3.5.2] GMP synthase (glutamine-hydrolyzing).; [KOG1622] GMP synthase; [PTHR11922] GMP SYNTHASE-RELATED; [GO:0006177] GMP biosynthetic process; [K01951] GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]; [PF00117] Glutamine amidotransferase class-I; [GO:0006164] purine nucleotide biosynthetic process 5.10 0.8521 2 Mapoly0153s0027 [PTHR22889] UNCHARACTERIZED; [KOG1188] WD40 repeat protein; [GO:0005515] protein binding; [PF00400] WD domain, G-beta repeat 6.00 0.8261 3 Mapoly0001s0278 [PF03690] Uncharacterised protein family (UPF0160); [PTHR11215:SF0] SUBFAMILY NOT NAMED; [KOG2948] Predicted metal-binding protein; [PTHR11215] METAL DEPENDENT HYDROLASE - RELATED 10.68 0.8253 4 Mapoly0036s0028 [PF04939] Ribosome biogenesis regulatory protein (RRS1); [KOG1765] Regulator of ribosome synthesis; [GO:0042254] ribosome biogenesis; [GO:0005634] nucleus; [PTHR17602] RIBOSOME BIOGENESIS REGULATORY PROTEIN 11.66 0.8220 5 Mapoly0084s0068 [PTHR10971] MRNA EXPORT FACTOR AND BUB3; [GO:0005515] protein binding; [K14298] mRNA export factor; [PTHR10971:SF11] MRNA EXPORT FACTOR; [PF00400] WD domain, G-beta repeat; [KOG0647] mRNA export protein (contains WD40 repeats) 11.83 0.8073 6 Mapoly0132s0010 [GO:0005524] ATP binding; [K01876] aspartyl-tRNA synthetase [EC:6.1.1.12]; [GO:0004815] aspartate-tRNA ligase activity; [GO:0005737] cytoplasm; [GO:0006422] aspartyl-tRNA aminoacylation; [6.1.1.12] Aspartate--tRNA ligase.; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [GO:0003676] nucleic acid binding; [KOG0556] Aspartyl-tRNA synthetase; [PTHR22594:SF10] SUBFAMILY NOT NAMED; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N) 12.96 0.8079 7 Mapoly0020s0151 [PTHR12934] 50S RIBOSOMAL PROTEIN L15; [PF00828] Ribosomal protein L18e/L15; [GO:0003735] structural constituent of ribosome; [GO:0015934] large ribosomal subunit; [GO:0006412] translation 14.42 0.7878 8 Mapoly0110s0002 [PTHR13296:SF0] SUBFAMILY NOT NAMED; [K12861] pre-mRNA-splicing factor SPF27; [KOG3096] Spliceosome-associated coiled-coil protein; [PTHR13296] BCAS2 PROTEIN; [GO:0006397] mRNA processing; [PF05700] Breast carcinoma amplified sequence 2 (BCAS2) 15.49 0.8187 9 Mapoly0062s0065 [GO:0005524] ATP binding; [PTHR24031:SF96] LOC553462 PROTEIN (FRAGMENT); [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [KOG0346] RNA helicase 16.25 0.8099 10 Mapoly0063s0083 [KOG3492] Ribosome biogenesis protein NIP7; [K07565] 60S ribosome subunit biogenesis protein NIP7; [PF03657] Uncharacterised protein family (UPF0113); [PTHR23415:SF4] 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7; [PTHR23415] CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 18.73 0.7874 11 Mapoly0098s0036 [GO:0005840] ribosome; [GO:0003723] RNA binding; [PTHR13718] RIBOSOMAL S SUBUNIT; [PF00333] Ribosomal protein S5, N-terminal domain; [GO:0003735] structural constituent of ribosome; [GO:0006412] translation; [PF03719] Ribosomal protein S5, C-terminal domain 19.42 0.8011 12 Mapoly0091s0022 [KOG1521] RNA polymerase I and III, subunit RPA40/RPC40; [GO:0046983] protein dimerization activity; [PTHR11800:SF13] DNA-DIRECTED RNA POLYMERASE I; [PF01000] RNA polymerase Rpb3/RpoA insert domain; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PTHR11800] DNA-DIRECTED RNA POLYMERASE; [PF01193] RNA polymerase Rpb3/Rpb11 dimerisation domain 19.60 0.7978 13 Mapoly0143s0027 [PTHR22851] U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEIN; [PTHR22851:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [KOG0268] Sof1-like rRNA processing protein (contains WD40 repeats); [K11806] WD repeat and SOF domain-containing protein 1; [PF04158] Sof1-like domain; [PF00400] WD domain, G-beta repeat 19.67 0.8078 14 Mapoly0028s0079 [PF01981] Peptidyl-tRNA hydrolase PTH2; [3.1.1.29] Aminoacyl-tRNA hydrolase.; [K04794] peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29]; [KOG3282] Uncharacterized conserved protein; [PTHR12649] PEPTIDYL-TRNA HYDROLASE 2; [GO:0004045] aminoacyl-tRNA hydrolase activity 20.62 0.7969 15 Mapoly0001s0498 [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [KOG0294] WD40 repeat-containing protein; [PF00400] WD domain, G-beta repeat 21.33 0.8094 16 Mapoly0031s0040 [PF00206] Lyase; [4.3.2.2] Adenylosuccinate lyase.; [K01756] adenylosuccinate lyase [EC:4.3.2.2]; [KOG2700] Adenylosuccinate lyase; [PF08328] Adenylosuccinate lyase C-terminal; [GO:0004018] N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; [PTHR11444] ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE; [GO:0006188] IMP biosynthetic process 21.91 0.7802 17 Mapoly0090s0067 [GO:0005515] protein binding; [KOG0302] Ribosome Assembly protein; [PTHR22850] WD40 REPEAT FAMILY; [PF12265] Histone-binding protein RBBP4 or subunit C of CAF1 complex; [PTHR22850:SF6] GLUTAMATE RICH WD REPEAT PROTEIN (GRWD); [PF00400] WD domain, G-beta repeat 24.74 0.7953 18 Mapoly0015s0052 [KOG2467] Glycine/serine hydroxymethyltransferase; [GO:0006544] glycine metabolic process; [2.1.2.1] Glycine hydroxymethyltransferase.; [GO:0006563] L-serine metabolic process; [K00600] glycine hydroxymethyltransferase [EC:2.1.2.1]; [PF00464] Serine hydroxymethyltransferase; [GO:0004372] glycine hydroxymethyltransferase activity; [PTHR11680] SERINE HYDROXYMETHYLTRANSFERASE 26.46 0.7706 19 Mapoly0031s0031 [GO:0005840] ribosome; [PF00861] Ribosomal L18p/L5e family; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PTHR12899] 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL; [GO:0006412] translation 27.50 0.7646 20 Mapoly0041s0149 [GO:0009113] purine nucleobase biosynthetic process; [PF02844] Phosphoribosylglycinamide synthetase, N domain; [PTHR10520] TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED; [PF01071] Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; [GO:0004637] phosphoribosylamine-glycine ligase activity; [K01945] phosphoribosylamine--glycine ligase [EC:6.3.4.13]; [PF02843] Phosphoribosylglycinamide synthetase, C domain; [6.3.4.13] Phosphoribosylamine--glycine ligase. 27.75 0.7983 21 Mapoly0140s0011 [KOG3080] Nucleolar protein-like/EBNA1-binding protein; [PTHR13028] RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED; [PF05890] Eukaryotic rRNA processing protein EBP2; [PTHR13028:SF0] SUBFAMILY NOT NAMED 30.20 0.7676 22 Mapoly0031s0129 [K14561] U3 small nucleolar ribonucleoprotein protein IMP4; [KOG2781] U3 small nucleolar ribonucleoprotein (snoRNP) component; [PTHR22734] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4; [PF04427] Brix domain 31.18 0.8039 23 Mapoly0078s0032 [PF06325] Ribosomal protein L11 methyltransferase (PrmA); [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [GO:0005737] cytoplasm; [K11434] protein arginine N-methyltransferase 1 [EC:2.1.1.-]; [PTHR11006] PROTEIN ARGININE N-METHYLTRANSFERASE; [GO:0008276] protein methyltransferase activity; [GO:0006479] protein methylation; [KOG1499] Protein arginine N-methyltransferase PRMT1 and related enzymes 31.62 0.7922 24 Mapoly0044s0007 [KOG2971] RNA-binding protein required for biogenesis of the ribosomal 60S subunit; [PTHR13634] RIBOSOME BIOGENESIS PROTEIN BRIX; [PF04427] Brix domain 32.40 0.7908 25 Mapoly0090s0014 [GO:0008168] methyltransferase activity; [PTHR11006] PROTEIN ARGININE N-METHYLTRANSFERASE; [GO:0006479] protein methylation; [PTHR11006:SF21] PREDICTED: HYPOTHETICAL PROTEIN; [KOG1499] Protein arginine N-methyltransferase PRMT1 and related enzymes; [PF05185] PRMT5 arginine-N-methyltransferase 34.06 0.7654 26 Mapoly0037s0098 [KOG3089] Predicted DEAD-box-containing helicase; [PTHR24030] FAMILY NOT NAMED; [PF14617] U3-containing 90S pre-ribosomal complex subunit 34.42 0.7981 27 Mapoly0079s0015 [PTHR11778] SERYL-TRNA SYNTHETASE; [GO:0005524] ATP binding; [GO:0004828] serine-tRNA ligase activity; [K01875] seryl-tRNA synthetase [EC:6.1.1.11]; [GO:0005737] cytoplasm; [GO:0006434] seryl-tRNA aminoacylation; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [KOG2509] Seryl-tRNA synthetase; [PF02403] Seryl-tRNA synthetase N-terminal domain; [GO:0000166] nucleotide binding; [PTHR11778:SF0] SUBFAMILY NOT NAMED; [6.1.1.11] Serine--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity 35.72 0.7887 28 Mapoly0083s0018 [PTHR14110:SF2] gb def: Mitochondrial import inner membrane translocase subunit tim22 homolog; [PF02466] Tim17/Tim22/Tim23/Pmp24 family; [PTHR14110] MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22; [PF00536] SAM domain (Sterile alpha motif) 35.78 0.7366 29 Mapoly0051s0055 [PTHR18359] WD-REPEAT PROTEIN-RELATED; [GO:0005515] protein binding; [KOG2055] WD40 repeat protein; [K14553] U3 small nucleolar RNA-associated protein 18; [PF00400] WD domain, G-beta repeat 36.03 0.8048 30 Mapoly0116s0029 [GO:0008168] methyltransferase activity; [KOG0822] Protein kinase inhibitor; [K02516] protein arginine N-methyltransferase 5 [EC:2.1.1.125]; [GO:0006479] protein methylation; [PF05185] PRMT5 arginine-N-methyltransferase; [PTHR10738] PROTEIN ARGININE N-METHYLTRANSFERASE 5; [2.1.1.125] Histone-arginine N-methyltransferase. 36.78 0.7736 31 Mapoly0058s0026 [PTHR13191] RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED; [PF12923] Ribosomal RNA-processing protein 7 (RRP7); [K14545] ribosomal RNA-processing protein 7 37.50 0.7676 32 Mapoly0053s0020 [GO:0004830] tryptophan-tRNA ligase activity; [6.1.1.2] Tryptophan--tRNA ligase.; [GO:0005524] ATP binding; [KOG2145] Cytoplasmic tryptophanyl-tRNA synthetase; [PF00579] tRNA synthetases class I (W and Y); [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [K01867] tryptophanyl-tRNA synthetase [EC:6.1.1.2]; [PTHR10055:SF1] TRYPTOPHANYL-TRNA SYNTHETASE, CYTOPLASMIC; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0006436] tryptophanyl-tRNA aminoacylation; [PTHR10055] TRYPTOPHANYL-TRNA SYNTHETASE; [GO:0004812] aminoacyl-tRNA ligase activity 38.42 0.7677 33 Mapoly0003s0262 [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38.92 0.7092 34 Mapoly0074s0049 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [PF01926] 50S ribosome-binding GTPase; [KOG1249] Predicted GTPases; [GO:0005525] GTP binding 42.40 0.7800 35 Mapoly0121s0015 [KOG4205] RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43.82 0.7885 36 Mapoly0015s0017 [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [GO:0042254] ribosome biogenesis; [GO:0005622] intracellular; [PF00466] Ribosomal protein L10; [KOG0816] Protein involved in mRNA turnover 43.99 0.7638 37 Mapoly0006s0099 [PTHR13261] CDK INHIBITOR P21 BINDING PROTEIN; [KOG3034] Isoamyl acetate-hydrolyzing esterase and related enzymes; [PF13862] p21-C-terminal region-binding protein 44.90 0.7740 38 Mapoly0040s0040 [GO:0016020] membrane; [PTHR23222] PROHIBITIN; [KOG3083] Prohibitin; [PF01145] SPFH domain / Band 7 family 44.90 0.7458 39 Mapoly0122s0018 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [KOG2423] Nucleolar GTPase; [PF01926] 50S ribosome-binding GTPase; [GO:0005730] nucleolus; [PF08153] NGP1NT (NUC091) domain; [K14537] nuclear GTP-binding protein; [GO:0005525] GTP binding; [PTHR11089:SF9] GTP-BINDING PROTEIN 2 46.64 0.7878 40 Mapoly0012s0170 [GO:0005515] protein binding; [PTHR19865] U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2; [PTHR19865:SF0] SUBFAMILY NOT NAMED; [KOG0299] U3 snoRNP-associated protein (contains WD40 repeats); [PF00400] WD domain, G-beta repeat 50.27 0.7938 41 Mapoly0020s0128 [PTHR12311] FAMILY NOT NAMED; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG3152] TBP-binding protein, activator of basal transcription (contains rrm motif) 50.65 0.7581 42 Mapoly0074s0052 [KOG3237] Uncharacterized conserved protein; [PTHR12838] U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11; [GO:0006364] rRNA processing; [GO:0032040] small-subunit processome; [PF03998] Utp11 protein 52.65 0.7850 43 Mapoly0161s0006 - 52.96 0.6492 44 Mapoly0115s0026 [KOG4134] DNA-dependent RNA polymerase I; [PTHR12709] DNA-DIRECTED RNA POLYMERASE II, III 53.40 0.7887 45 Mapoly0060s0029 [PF15370] Domain of unknown function (DUF4598) 54.84 0.7124 46 Mapoly0102s0045 [PF00571] CBS domain; [K00088] IMP dehydrogenase [EC:1.1.1.205]; [GO:0055114] oxidation-reduction process; [PTHR11911:SF6] INOSINE-5-MONOPHOSPHATE DEHYDROGENASE; [PTHR11911] INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED; [PF00478] IMP dehydrogenase / GMP reductase domain; [1.1.1.205] IMP dehydrogenase.; [GO:0003824] catalytic activity; [GO:0030554] adenyl nucleotide binding; [GO:0006164] purine nucleotide biosynthetic process; [KOG2550] IMP dehydrogenase/GMP reductase; [GO:0003938] IMP dehydrogenase activity 55.10 0.7568 47 Mapoly0001s0200 [K01778] diaminopimelate epimerase [EC:5.1.1.7]; [PF01678] Diaminopimelate epimerase; [5.1.1.7] Diaminopimelate epimerase.; [GO:0008837] diaminopimelate epimerase activity; [GO:0009089] lysine biosynthetic process via diaminopimelate; [PTHR31689] FAMILY NOT NAMED; [PTHR31689:SF0] SUBFAMILY NOT NAMED 56.83 0.7132 48 Mapoly0053s0018 - 57.91 0.7211 49 Mapoly0025s0131 [GO:0006433] prolyl-tRNA aminoacylation; [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [GO:0000166] nucleotide binding; [GO:0004827] proline-tRNA ligase activity; [KOG4163] Prolyl-tRNA synthetase; [PTHR11451] TRNA SYNTHETASE-RELATED; [PF03129] Anticodon binding domain; [6.1.1.15] Proline--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF09180] Prolyl-tRNA synthetase, C-terminal; [K01881] prolyl-tRNA synthetase [EC:6.1.1.15] 57.92 0.7417 50 Mapoly0010s0185 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10169] DNA TOPOISOMERASE/GYRASE; [K02469] DNA gyrase subunit A [EC:5.99.1.3]; [GO:0006265] DNA topological change; [GO:0003918] DNA topoisomerase type II (ATP-hydrolyzing) activity; [PF00521] DNA gyrase/topoisomerase IV, subunit A; [GO:0005694] chromosome; [KOG0355] DNA topoisomerase type II; [GO:0003916] DNA topoisomerase activity; [PF03989] DNA gyrase C-terminal domain, beta-propeller; [5.99.1.3] DNA topoisomerase (ATP-hydrolyzing). 58.02 0.7530