Guide Gene

Gene ID
Mapoly0001s0200
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[K01778] diaminopimelate epimerase [EC:5.1.1.7]; [PF01678] Diaminopimelate epimerase; [5.1.1.7] Diaminopimelate epimerase.; [GO:0008837] diaminopimelate epimerase activity; [GO:0009089] lysine biosynthetic process via diaminopimelate; [PTHR31689] FAMILY NOT NAMED; [PTHR31689:SF0] SUBFAMILY NOT NAMED

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0001s0200 [K01778] diaminopimelate epimerase [EC:5.1.1.7]; [PF01678] Diaminopimelate epimerase; [5.1.1.7] Diaminopimelate epimerase.; [GO:0008837] diaminopimelate epimerase activity; [GO:0009089] lysine biosynthetic process via diaminopimelate; [PTHR31689] FAMILY NOT NAMED; [PTHR31689:SF0] SUBFAMILY NOT NAMED 0.00 1.0000
1 Mapoly0028s0030 [PF06228] Haem utilisation ChuX/HutX2.240.7954
2 Mapoly0197s0012 [GO:0005515] protein binding; [K03030] 26S proteasome regulatory subunit N11; [PF13012] Maintenance of mitochondrial structure and function; [PF01398] JAB1/Mov34/MPN/PAD-1 ubiquitin protease; [KOG1555] 26S proteasome regulatory complex, subunit RPN11; [PTHR10410] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED; [PTHR10410:SF5] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 143.000.7704
3 Mapoly0005s0182 [PF02784] Pyridoxal-dependent decarboxylase, pyridoxal binding domain; [PTHR11482:SF5] DIAMINOPIMELATE DECARBOXYLASE; [PF00278] Pyridoxal-dependent decarboxylase, C-terminal sheet domain; [KOG0622] Ornithine decarboxylase; [PTHR11482] ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE; [4.1.1.20] Diaminopimelate decarboxylase.; [GO:0003824] catalytic activity; [K01586] diaminopimelate decarboxylase [EC:4.1.1.20]5.200.8078
4 Mapoly0006s0092 [PTHR24012] FAMILY NOT NAMED; [KOG0131] Splicing factor 3b, subunit 4; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)5.660.8030
5 Mapoly0108s0056 -6.240.7644
6 Mapoly0086s0044 [GO:0008652] cellular amino acid biosynthetic process; [PF01118] Semialdehyde dehydrogenase, NAD binding domain; [GO:0005737] cytoplasm; [GO:0055114] oxidation-reduction process; [GO:0046983] protein dimerization activity; [PF02774] Semialdehyde dehydrogenase, dimerisation domain; [K00133] aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]; [1.2.1.11] Aspartate-semialdehyde dehydrogenase.; [GO:0016620] oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; [PTHR10174] RETINALDEHYDE BINDING PROTEIN-RELATED; [GO:0051287] NAD binding; [GO:0003942] N-acetyl-gamma-glutamyl-phosphate reductase activity; [KOG4777] Aspartate-semialdehyde dehydrogenase6.480.8018
7 Mapoly0053s0020 [GO:0004830] tryptophan-tRNA ligase activity; [6.1.1.2] Tryptophan--tRNA ligase.; [GO:0005524] ATP binding; [KOG2145] Cytoplasmic tryptophanyl-tRNA synthetase; [PF00579] tRNA synthetases class I (W and Y); [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [K01867] tryptophanyl-tRNA synthetase [EC:6.1.1.2]; [PTHR10055:SF1] TRYPTOPHANYL-TRNA SYNTHETASE, CYTOPLASMIC; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0006436] tryptophanyl-tRNA aminoacylation; [PTHR10055] TRYPTOPHANYL-TRNA SYNTHETASE; [GO:0004812] aminoacyl-tRNA ligase activity10.390.7958
8 Mapoly0023s0016 [KOG0541] Alkyl hydroperoxide reductase/peroxiredoxin; [GO:0016491] oxidoreductase activity; [PF08534] Redoxin; [PTHR10430] PEROXIREDOXIN; [PTHR10430:SF7] PEROXISOMAL MEMBRANE PROTEIN PMP2011.660.6646
9 Mapoly0007s0273 [PTHR30239:SF0] ACETOLACTATE SYNTHASE III, REGULATORY SUBUNIT; [2.2.1.6] Acetolactate synthase.; [PTHR30239] ACETOLACTATE SYNTHASE III, REGULATORY SUBUNIT; [K01653] acetolactate synthase I/III small subunit [EC:2.2.1.6]; [PF13710] ACT domain; [KOG2663] Acetolactate synthase, small subunit; [PF10369] Small subunit of acetolactate synthase13.190.7943
10 Mapoly0107s0028 [GO:0008168] methyltransferase activity; [PF00590] Tetrapyrrole (Corrin/Porphyrin) Methylases; [PTHR10882:SF0] DIPHTHINE SYNTHASE; [GO:0008152] metabolic process; [PTHR10882] DIPHTHINE SYNTHASE; [2.1.1.98] Diphthine synthase.; [K00586] diphthine synthase [EC:2.1.1.98]; [KOG3123] Diphthine synthase16.610.7676
11 Mapoly0082s0028 [K00620] glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]; [GO:0006526] arginine biosynthetic process; [2.3.1.1] Amino-acid N-acetyltransferase.; [PTHR23100:SF0] SUBFAMILY NOT NAMED; [GO:0004358] glutamate N-acetyltransferase activity; [PTHR23100] ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ; [PF01960] ArgJ family; [2.3.1.35] Glutamate N-acetyltransferase.; [KOG2786] Putative glutamate/ornithine acetyltransferase21.170.7616
12 Mapoly0023s0019 [PF12710] haloacid dehalogenase-like hydrolase; [KOG1615] Phosphoserine phosphatase; [PTHR10000] PHOSPHOSERINE PHOSPHATASE; [3.1.3.3] Phosphoserine phosphatase.; [K01079] phosphoserine phosphatase [EC:3.1.3.3]21.350.7396
13 Mapoly0098s0036 [GO:0005840] ribosome; [GO:0003723] RNA binding; [PTHR13718] RIBOSOMAL S SUBUNIT; [PF00333] Ribosomal protein S5, N-terminal domain; [GO:0003735] structural constituent of ribosome; [GO:0006412] translation; [PF03719] Ribosomal protein S5, C-terminal domain23.490.7719
14 Mapoly0048s0110 [PTHR31533] FAMILY NOT NAMED24.620.6347
15 Mapoly0066s0109 [K01887] arginyl-tRNA synthetase [EC:6.1.1.19]; [GO:0005524] ATP binding; [PTHR11956] ARGINYL-TRNA SYNTHETASE; [GO:0005737] cytoplasm; [PF05746] DALR anticodon binding domain; [GO:0000166] nucleotide binding; [PF03485] Arginyl tRNA synthetase N terminal domain; [GO:0006420] arginyl-tRNA aminoacylation; [6.1.1.19] Arginine--tRNA ligase.; [KOG4426] Arginyl-tRNA synthetase; [GO:0004814] arginine-tRNA ligase activity; [PTHR11956:SF1] ARGINYL-TRNA SYNTHETASE; [PF00750] tRNA synthetases class I (R)26.980.7880
16 Mapoly0078s0032 [PF06325] Ribosomal protein L11 methyltransferase (PrmA); [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [GO:0005737] cytoplasm; [K11434] protein arginine N-methyltransferase 1 [EC:2.1.1.-]; [PTHR11006] PROTEIN ARGININE N-METHYLTRANSFERASE; [GO:0008276] protein methyltransferase activity; [GO:0006479] protein methylation; [KOG1499] Protein arginine N-methyltransferase PRMT1 and related enzymes27.020.7687
17 Mapoly0019s0154 [PF09296] NADH pyrophosphatase-like rudimentary NUDIX domain; [PF09297] NADH pyrophosphatase zinc ribbon domain; [GO:0016787] hydrolase activity; [K03426] NAD+ diphosphatase [EC:3.6.1.22]; [PF05005] Janus/Ocnus family (Ocnus); [3.6.1.22] NAD(+) diphosphatase.; [GO:0046872] metal ion binding; [PTHR22769] MUTT/NUDIX HYDROLASE; [PF00293] NUDIX domain27.550.7144
18 Mapoly0031s0040 [PF00206] Lyase; [4.3.2.2] Adenylosuccinate lyase.; [K01756] adenylosuccinate lyase [EC:4.3.2.2]; [KOG2700] Adenylosuccinate lyase; [PF08328] Adenylosuccinate lyase C-terminal; [GO:0004018] N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; [PTHR11444] ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE; [GO:0006188] IMP biosynthetic process28.280.7393
19 Mapoly0173s0009 [GO:0005524] ATP binding; [K00872] homoserine kinase [EC:2.7.1.39]; [PTHR20861] HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE; [PTHR20861:SF1] HOMOSERINE KINASE; [PF08544] GHMP kinases C terminal; [2.7.1.39] Homoserine kinase.; [PF00288] GHMP kinases N terminal domain; [KOG1537] Homoserine kinase29.240.6955
20 Mapoly0012s0185 [GO:0055114] oxidation-reduction process; [GO:0009396] folic acid-containing compound biosynthetic process; [GO:0004488] methylenetetrahydrofolate dehydrogenase (NADP+) activity; [PTHR10025] TETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE FAMILY MEMBER; [PF02882] Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; [PF00763] Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; [GO:0003824] catalytic activity; [KOG0089] Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase30.330.7319
21 Mapoly0076s0091 [PF00450] Serine carboxypeptidase; [PTHR11802] SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE; [KOG1282] Serine carboxypeptidases (lysosomal cathepsin A); [GO:0006508] proteolysis; [GO:0004185] serine-type carboxypeptidase activity31.730.6824
22 Mapoly0010s0155 [PF08213] Mitochondrial domain of unknown function (DUF1713)33.050.7244
23 Mapoly0002s0326 [GO:0003922] GMP synthase (glutamine-hydrolyzing) activity; [GO:0005524] ATP binding; [PF00958] GMP synthase C terminal domain; [6.3.5.2] GMP synthase (glutamine-hydrolyzing).; [KOG1622] GMP synthase; [PTHR11922] GMP SYNTHASE-RELATED; [GO:0006177] GMP biosynthetic process; [K01951] GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]; [PF00117] Glutamine amidotransferase class-I; [GO:0006164] purine nucleotide biosynthetic process33.330.7681
24 Mapoly0032s0012 [PTHR11808] TRANS-SULFURATION ENZYME FAMILY MEMBER; [GO:0030170] pyridoxal phosphate binding; [PF06838] Methionine gamma-lyase; [PTHR11808:SF41] CYSTATHIONINE GAMMA-LYASE-RELATED33.470.7111
25 Mapoly0112s0035 [PF04117] Mpv17 / PMP22 family; [PTHR11266:SF5] 22 KDA PEROXISOMAL MEMBRANE PROTEIN; [GO:0016021] integral to membrane; [PTHR11266] PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 (MPV17)33.910.6950
26 Mapoly0132s0010 [GO:0005524] ATP binding; [K01876] aspartyl-tRNA synthetase [EC:6.1.1.12]; [GO:0004815] aspartate-tRNA ligase activity; [GO:0005737] cytoplasm; [GO:0006422] aspartyl-tRNA aminoacylation; [6.1.1.12] Aspartate--tRNA ligase.; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [GO:0003676] nucleic acid binding; [KOG0556] Aspartyl-tRNA synthetase; [PTHR22594:SF10] SUBFAMILY NOT NAMED; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N)37.470.7408
27 Mapoly0040s0040 [GO:0016020] membrane; [PTHR23222] PROHIBITIN; [KOG3083] Prohibitin; [PF01145] SPFH domain / Band 7 family37.630.7298
28 Mapoly0084s0068 [PTHR10971] MRNA EXPORT FACTOR AND BUB3; [GO:0005515] protein binding; [K14298] mRNA export factor; [PTHR10971:SF11] MRNA EXPORT FACTOR; [PF00400] WD domain, G-beta repeat; [KOG0647] mRNA export protein (contains WD40 repeats)39.420.7382
29 Mapoly0074s0049 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [PF01926] 50S ribosome-binding GTPase; [KOG1249] Predicted GTPases; [GO:0005525] GTP binding40.790.7482
30 Mapoly0013s0064 [KOG1401] Acetylornithine aminotransferase; [PTHR11986] AMINOTRANSFERASE CLASS III; [GO:0030170] pyridoxal phosphate binding; [PTHR11986:SF23] ALANINE-GLYOXYLATE AMINOTRANSFERASE 2; [2.6.1.11] Acetylornithine transaminase.; [GO:0008483] transaminase activity; [PF00202] Aminotransferase class-III; [K00818] acetylornithine aminotransferase [EC:2.6.1.11]41.690.7334
31 Mapoly0067s0012 -45.280.6999
32 Mapoly0014s0186 [GO:0016020] membrane; [PTHR23222] PROHIBITIN; [KOG3090] Prohibitin-like protein; [PF01145] SPFH domain / Band 7 family46.130.7026
33 Mapoly0003s0283 [PF00135] Carboxylesterase family; [PTHR23024] MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES46.470.6233
34 Mapoly0007s0122 [2.6.1.9] Histidinol-phosphate transaminase.; [GO:0009058] biosynthetic process; [KOG0633] Histidinol phosphate aminotransferase; [GO:0030170] pyridoxal phosphate binding; [K00817] histidinol-phosphate aminotransferase [EC:2.6.1.9]; [PF00155] Aminotransferase class I and II; [PTHR11751:SF3] HISTIDINOL-PHOSPHATE AMINOTRANSFERASE; [PTHR11751] SUBGROUP I AMINOTRANSFERASE RELATED46.480.7000
35 Mapoly0153s0027 [PTHR22889] UNCHARACTERIZED; [KOG1188] WD40 repeat protein; [GO:0005515] protein binding; [PF00400] WD domain, G-beta repeat46.830.7419
36 Mapoly0044s0128 [K01687] dihydroxy-acid dehydratase [EC:4.2.1.9]; [PF00920] Dehydratase family; [KOG2448] Dihydroxy-acid dehydratase; [GO:0008152] metabolic process; [PTHR21000] DIHYDROXY-ACID DEHYDRATASE (DAD); [GO:0003824] catalytic activity; [4.2.1.9] Dihydroxy-acid dehydratase.47.590.7567
37 Mapoly0010s0125 [PTHR21256] HISTIDINOL DEHYDROGENASE (HDH); [PF01502] Phosphoribosyl-AMP cyclohydrolase; [GO:0004635] phosphoribosyl-AMP cyclohydrolase activity; [3.6.1.31] Phosphoribosyl-ATP diphosphatase.; [GO:0000105] histidine biosynthetic process; [K11755] phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19]; [PF01503] Phosphoribosyl-ATP pyrophosphohydrolase; [KOG4311] Histidinol dehydrogenase; [3.5.4.19] Phosphoribosyl-AMP cyclohydrolase.50.200.6233
38 Mapoly0011s0012 [GO:0016020] membrane; [KOG2620] Prohibitins and stomatins of the PID superfamily; [PTHR10264] BAND 7 PROTEIN-RELATED; [PTHR10264:SF27] UNCHARACTERIZED; [PF01145] SPFH domain / Band 7 family53.100.7165
39 Mapoly0054s0003 [K01409] O-sialoglycoprotein endopeptidase [EC:3.4.24.57]; [KOG2708] Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold); [PF00814] Glycoprotease family; [PTHR11735] O-SIALOGLYCOPROTEIN ENDOPEPTIDASE; [3.4.24.57] O-sialoglycoprotein endopeptidase.; [PTHR11735:SF6] SUBFAMILY NOT NAMED55.240.7209
40 Mapoly0007s0029 [KOG3165] Predicted nucleic-acid-binding protein, contains PIN domain; [PF04900] Fcf1; [PTHR12416] UNCHARACTERIZED; [GO:0032040] small-subunit processome; [K14566] U3 small nucleolar RNA-associated protein 2456.830.7132
41 Mapoly0078s0022 [GO:0005840] ribosome; [PF14693] Ribosomal protein TL5, C-terminal domain; [GO:0003735] structural constituent of ribosome; [GO:0008097] 5S rRNA binding; [PF01386] Ribosomal L25p family; [GO:0006412] translation58.250.7011
42 Mapoly0020s0151 [PTHR12934] 50S RIBOSOMAL PROTEIN L15; [PF00828] Ribosomal protein L18e/L15; [GO:0003735] structural constituent of ribosome; [GO:0015934] large ribosomal subunit; [GO:0006412] translation59.320.6855
43 Mapoly0039s0004 [KOG2768] Translation initiation factor 2, beta subunit (eIF-2beta); [PF01873] Domain found in IF2B/IF5; [GO:0003743] translation initiation factor activity; [K03238] translation initiation factor eIF-2 beta subunit; [GO:0006413] translational initiation; [PTHR23001] EUKARYOTIC TRANSLATION INITIATION FACTOR59.450.6437
44 Mapoly0112s0059 [GO:0005524] ATP binding; [KOG0328] Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily; [PTHR24031:SF57] SUBFAMILY NOT NAMED; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [K13025] ATP-dependent RNA helicase [EC:3.6.4.13]; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding60.830.7058
45 Mapoly0001s0104 [GO:0008152] metabolic process; [PTHR11670] ACONITASE; [4.2.1.35] (R)-2-methylmalate dehydratase.; [PF00694] Aconitase C-terminal domain; [4.2.1.33] 3-isopropylmalate dehydratase.; [K01704] 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]60.990.6741
46 Mapoly0118s0031 [PTHR13068:SF8] gb def: riken cdna 2410017i18 [mus musculus]; [KOG1267] Mitochondrial transcription termination factor, mTERF; [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED61.870.7171
47 Mapoly0050s0013 [PTHR10612:SF7] APOLIPOPROTEIN D-RELATED; [PTHR10612] APOLIPOPROTEIN D; [PF08212] Lipocalin-like domain64.600.6324
48 Mapoly0003s0044 [PTHR10745:SF0] GLYCYL-TRNA SYNTHETASE; [GO:0005524] ATP binding; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [GO:0000166] nucleotide binding; [PTHR10745] GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2; [6.1.1.14] Glycine--tRNA ligase.; [KOG2298] Glycyl-tRNA synthetase and related class II tRNA synthetase; [K01880] glycyl-tRNA synthetase [EC:6.1.1.14]; [PF03129] Anticodon binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity64.610.7274
49 Mapoly0076s0035 [PF05773] RWD domain; [GO:0005515] protein binding; [PTHR12292] RWD DOMAIN-CONTAINING PROTEIN; [KOG4018] Uncharacterized conserved protein, contains RWD domain67.820.6296
50 Mapoly0005s0193 [PF00206] Lyase; [PF14698] Argininosuccinate lyase C-terminal; [4.3.2.1] Argininosuccinate lyase.; [KOG1316] Argininosuccinate lyase; [GO:0004056] argininosuccinate lyase activity; [PTHR11444:SF3] ARGININOSUCCINATE LYASE; [PTHR11444] ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE; [GO:0042450] arginine biosynthetic process via ornithine; [K01755] argininosuccinate lyase [EC:4.3.2.1]68.930.7219
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