Guide Gene

Gene ID
Mapoly0032s0012
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR11808] TRANS-SULFURATION ENZYME FAMILY MEMBER; [GO:0030170] pyridoxal phosphate binding; [PF06838] Methionine gamma-lyase; [PTHR11808:SF41] CYSTATHIONINE GAMMA-LYASE-RELATED

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0032s0012 [PTHR11808] TRANS-SULFURATION ENZYME FAMILY MEMBER; [GO:0030170] pyridoxal phosphate binding; [PF06838] Methionine gamma-lyase; [PTHR11808:SF41] CYSTATHIONINE GAMMA-LYASE-RELATED 0.00 1.0000
1 Mapoly0081s0053 [PF04452] RNA methyltransferase; [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [PTHR30027] RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E; [K09761] ribosomal RNA small subunit methyltransferase E [EC:2.1.1.-]; [GO:0006364] rRNA processing1.000.7933
2 Mapoly0019s0154 [PF09296] NADH pyrophosphatase-like rudimentary NUDIX domain; [PF09297] NADH pyrophosphatase zinc ribbon domain; [GO:0016787] hydrolase activity; [K03426] NAD+ diphosphatase [EC:3.6.1.22]; [PF05005] Janus/Ocnus family (Ocnus); [3.6.1.22] NAD(+) diphosphatase.; [GO:0046872] metal ion binding; [PTHR22769] MUTT/NUDIX HYDROLASE; [PF00293] NUDIX domain6.930.7574
3 Mapoly0031s0040 [PF00206] Lyase; [4.3.2.2] Adenylosuccinate lyase.; [K01756] adenylosuccinate lyase [EC:4.3.2.2]; [KOG2700] Adenylosuccinate lyase; [PF08328] Adenylosuccinate lyase C-terminal; [GO:0004018] N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; [PTHR11444] ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE; [GO:0006188] IMP biosynthetic process9.590.7673
4 Mapoly0080s0050 [GO:0003723] RNA binding; [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [GO:0006355] regulation of transcription, DNA-dependent; [PF01029] NusB family; [2.1.1.-] Methyltransferases.; [KOG1122] tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2); [PF01189] NOL1/NOP2/sun family; [K03500] ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]12.490.7459
5 Mapoly0153s0027 [PTHR22889] UNCHARACTERIZED; [KOG1188] WD40 repeat protein; [GO:0005515] protein binding; [PF00400] WD domain, G-beta repeat13.190.7713
6 Mapoly0003s0145 [PF02527] rRNA small subunit methyltransferase G; [2.1.-.-] Transferring one-carbon groups.; [GO:0005737] cytoplasm; [K03501] ribosomal RNA small subunit methyltransferase G [EC:2.1.1.170]; [PTHR31760] FAMILY NOT NAMED; [GO:0006364] rRNA processing; [GO:0008649] rRNA methyltransferase activity13.420.7280
7 Mapoly0054s0113 [GO:0006396] RNA processing; [2.1.1.-] Methyltransferases.; [PTHR11061] RNA M5U METHYLTRANSFERASE FAMILY; [K00599] trans-aconitate 2-methyltransferase [EC:2.1.1.144]; [GO:0008173] RNA methyltransferase activity; [PF05958] tRNA (Uracil-5-)-methyltransferase; [KOG2187] tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes15.590.7677
8 Mapoly0007s0273 [PTHR30239:SF0] ACETOLACTATE SYNTHASE III, REGULATORY SUBUNIT; [2.2.1.6] Acetolactate synthase.; [PTHR30239] ACETOLACTATE SYNTHASE III, REGULATORY SUBUNIT; [K01653] acetolactate synthase I/III small subunit [EC:2.2.1.6]; [PF13710] ACT domain; [KOG2663] Acetolactate synthase, small subunit; [PF10369] Small subunit of acetolactate synthase17.150.7598
9 Mapoly0118s0031 [PTHR13068:SF8] gb def: riken cdna 2410017i18 [mus musculus]; [KOG1267] Mitochondrial transcription termination factor, mTERF; [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED17.180.7600
10 Mapoly0056s0124 [GO:0008168] methyltransferase activity; [K00783] hypothetical protein; [GO:0005737] cytoplasm; [GO:0006364] rRNA processing; [PF02590] Predicted SPOUT methyltransferase18.000.6542
11 Mapoly0066s0058 [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [KOG0330] ATP-dependent RNA helicase19.210.7531
12 Mapoly0003s0096 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [GO:0005515] protein binding; [PF00856] SET domain; [PF09273] Rubisco LSMT substrate-binding23.220.7578
13 Mapoly0046s0081 [GO:0005524] ATP binding; [KOG0335] ATP-dependent RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding25.690.7486
14 Mapoly0007s0165 -27.460.6877
15 Mapoly0114s0040 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family33.270.7171
16 Mapoly0074s0049 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [PF01926] 50S ribosome-binding GTPase; [KOG1249] Predicted GTPases; [GO:0005525] GTP binding33.330.7491
17 Mapoly0001s0200 [K01778] diaminopimelate epimerase [EC:5.1.1.7]; [PF01678] Diaminopimelate epimerase; [5.1.1.7] Diaminopimelate epimerase.; [GO:0008837] diaminopimelate epimerase activity; [GO:0009089] lysine biosynthetic process via diaminopimelate; [PTHR31689] FAMILY NOT NAMED; [PTHR31689:SF0] SUBFAMILY NOT NAMED33.470.7111
18 Mapoly0041s0149 [GO:0009113] purine nucleobase biosynthetic process; [PF02844] Phosphoribosylglycinamide synthetase, N domain; [PTHR10520] TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED; [PF01071] Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; [GO:0004637] phosphoribosylamine-glycine ligase activity; [K01945] phosphoribosylamine--glycine ligase [EC:6.3.4.13]; [PF02843] Phosphoribosylglycinamide synthetase, C domain; [6.3.4.13] Phosphoribosylamine--glycine ligase.33.910.7530
19 Mapoly0002s0246 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase37.310.7351
20 Mapoly0082s0028 [K00620] glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]; [GO:0006526] arginine biosynthetic process; [2.3.1.1] Amino-acid N-acetyltransferase.; [PTHR23100:SF0] SUBFAMILY NOT NAMED; [GO:0004358] glutamate N-acetyltransferase activity; [PTHR23100] ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ; [PF01960] ArgJ family; [2.3.1.35] Glutamate N-acetyltransferase.; [KOG2786] Putative glutamate/ornithine acetyltransferase42.990.7207
21 Mapoly0019s0078 [KOG2388] UDP-N-acetylglucosamine pyrophosphorylase; [PF05239] PRC-barrel domain; [GO:0070569] uridylyltransferase activity; [GO:0008152] metabolic process; [PF01782] RimM N-terminal domain; [PTHR11952:SF2] UDP-N-ACTEYLGLUCOSAMINE PYROPHOSPHORYLASE 1; [PF01704] UTP--glucose-1-phosphate uridylyltransferase; [GO:0006364] rRNA processing; [PTHR11952] UDP- GLUCOSE PYROPHOSPHORYLASE47.620.7413
22 Mapoly0108s0056 -48.910.6902
23 Mapoly0037s0098 [KOG3089] Predicted DEAD-box-containing helicase; [PTHR24030] FAMILY NOT NAMED; [PF14617] U3-containing 90S pre-ribosomal complex subunit50.650.7382
24 Mapoly0105s0048 [PF03417] Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase50.730.7100
25 Mapoly0005s0193 [PF00206] Lyase; [PF14698] Argininosuccinate lyase C-terminal; [4.3.2.1] Argininosuccinate lyase.; [KOG1316] Argininosuccinate lyase; [GO:0004056] argininosuccinate lyase activity; [PTHR11444:SF3] ARGININOSUCCINATE LYASE; [PTHR11444] ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE; [GO:0042450] arginine biosynthetic process via ornithine; [K01755] argininosuccinate lyase [EC:4.3.2.1]51.790.7312
26 Mapoly0001s0278 [PF03690] Uncharacterised protein family (UPF0160); [PTHR11215:SF0] SUBFAMILY NOT NAMED; [KOG2948] Predicted metal-binding protein; [PTHR11215] METAL DEPENDENT HYDROLASE - RELATED53.760.7320
27 Mapoly0061s0053 -54.270.7117
28 Mapoly0102s0005 [PF06962] Putative rRNA methylase54.390.6904
29 Mapoly0101s0005 [K01883] cysteinyl-tRNA synthetase [EC:6.1.1.16]; [PTHR10890] CYSTEINYL-TRNA SYNTHETASE; [PF01406] tRNA synthetases class I (C) catalytic domain; [6.1.1.16] Cysteine--tRNA ligase.; [KOG2007] Cysteinyl-tRNA synthetase61.140.6967
30 Mapoly0102s0045 [PF00571] CBS domain; [K00088] IMP dehydrogenase [EC:1.1.1.205]; [GO:0055114] oxidation-reduction process; [PTHR11911:SF6] INOSINE-5-MONOPHOSPHATE DEHYDROGENASE; [PTHR11911] INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED; [PF00478] IMP dehydrogenase / GMP reductase domain; [1.1.1.205] IMP dehydrogenase.; [GO:0003824] catalytic activity; [GO:0030554] adenyl nucleotide binding; [GO:0006164] purine nucleotide biosynthetic process; [KOG2550] IMP dehydrogenase/GMP reductase; [GO:0003938] IMP dehydrogenase activity61.400.7132
31 Mapoly0044s0034 [PF01259] SAICAR synthetase; [KOG2835] Phosphoribosylamidoimidazole-succinocarboxamide synthase; [K01923] phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]; [6.3.2.6] Phosphoribosylaminoimidazolesuccinocarboxamide synthase.; [PTHR11609] PURINE BIOSYNTHESIS PROTEIN 6/7, PUR6/7; [PTHR11609:SF1] PURINE BIOSYNTHESIS PROTEIN 7, PUR761.710.7140
32 Mapoly0055s0075 [PF01276] Orn/Lys/Arg decarboxylase, major domain; [PF03711] Orn/Lys/Arg decarboxylase, C-terminal domain; [GO:0003824] catalytic activity; [PTHR11751] SUBGROUP I AMINOTRANSFERASE RELATED64.360.6534
33 Mapoly0086s0044 [GO:0008652] cellular amino acid biosynthetic process; [PF01118] Semialdehyde dehydrogenase, NAD binding domain; [GO:0005737] cytoplasm; [GO:0055114] oxidation-reduction process; [GO:0046983] protein dimerization activity; [PF02774] Semialdehyde dehydrogenase, dimerisation domain; [K00133] aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]; [1.2.1.11] Aspartate-semialdehyde dehydrogenase.; [GO:0016620] oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; [PTHR10174] RETINALDEHYDE BINDING PROTEIN-RELATED; [GO:0051287] NAD binding; [GO:0003942] N-acetyl-gamma-glutamyl-phosphate reductase activity; [KOG4777] Aspartate-semialdehyde dehydrogenase64.580.6960
34 Mapoly0053s0018 -65.810.6860
35 Mapoly0013s0064 [KOG1401] Acetylornithine aminotransferase; [PTHR11986] AMINOTRANSFERASE CLASS III; [GO:0030170] pyridoxal phosphate binding; [PTHR11986:SF23] ALANINE-GLYOXYLATE AMINOTRANSFERASE 2; [2.6.1.11] Acetylornithine transaminase.; [GO:0008483] transaminase activity; [PF00202] Aminotransferase class-III; [K00818] acetylornithine aminotransferase [EC:2.6.1.11]66.140.7077
36 Mapoly0028s0030 [PF06228] Haem utilisation ChuX/HutX66.660.6576
37 Mapoly0122s0011 [GO:0005524] ATP binding; [KOG0327] Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031:SF114] MITOCHONDRIAL DEAD BOX PROTEIN, PUTATIVE; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding69.970.6914
38 Mapoly0008s0196 [KOG2505] Ankyrin repeat protein; [GO:0005515] protein binding; [PTHR16036:SF2] SUBFAMILY NOT NAMED; [PF13606] Ankyrin repeat; [PTHR16036] FAMILY NOT NAMED70.960.7283
39 Mapoly0063s0069 [PTHR32379] FAMILY NOT NAMED; [KOG1709] Guanidinoacetate methyltransferase and related proteins; [PF12796] Ankyrin repeats (3 copies)72.060.7236
40 Mapoly0066s0109 [K01887] arginyl-tRNA synthetase [EC:6.1.1.19]; [GO:0005524] ATP binding; [PTHR11956] ARGINYL-TRNA SYNTHETASE; [GO:0005737] cytoplasm; [PF05746] DALR anticodon binding domain; [GO:0000166] nucleotide binding; [PF03485] Arginyl tRNA synthetase N terminal domain; [GO:0006420] arginyl-tRNA aminoacylation; [6.1.1.19] Arginine--tRNA ligase.; [KOG4426] Arginyl-tRNA synthetase; [GO:0004814] arginine-tRNA ligase activity; [PTHR11956:SF1] ARGINYL-TRNA SYNTHETASE; [PF00750] tRNA synthetases class I (R)73.990.7221
41 Mapoly0004s0293 [GO:0005515] protein binding; [PTHR13889:SF2] WD-REPEAT PROTEIN 36 (T-CELL ACTIVATION WD REPEAT PROTEIN); [PTHR13889] PRE-MRNA SPLICING FACTOR PRP19-RELATED; [KOG1539] WD repeat protein; [GO:0006364] rRNA processing; [GO:0032040] small-subunit processome; [K14554] U3 small nucleolar RNA-associated protein 21; [PF04192] Utp21 specific WD40 associated putative domain; [PF00400] WD domain, G-beta repeat75.860.7272
42 Mapoly0051s0001 [GO:0006433] prolyl-tRNA aminoacylation; [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [GO:0000166] nucleotide binding; [PTHR11451:SF6] PROLYL-TRNA SYNTHETASE; [GO:0004827] proline-tRNA ligase activity; [KOG4163] Prolyl-tRNA synthetase; [PTHR11451] TRNA SYNTHETASE-RELATED; [PF03129] Anticodon binding domain; [6.1.1.15] Proline--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF09180] Prolyl-tRNA synthetase, C-terminal; [K01881] prolyl-tRNA synthetase [EC:6.1.1.15]76.880.7124
43 Mapoly0070s0021 [PF12796] Ankyrin repeats (3 copies); [PTHR24198] ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN77.720.6990
44 Mapoly0006s0185 [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED78.000.7196
45 Mapoly0012s0185 [GO:0055114] oxidation-reduction process; [GO:0009396] folic acid-containing compound biosynthetic process; [GO:0004488] methylenetetrahydrofolate dehydrogenase (NADP+) activity; [PTHR10025] TETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE FAMILY MEMBER; [PF02882] Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; [PF00763] Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; [GO:0003824] catalytic activity; [KOG0089] Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase78.800.6788
46 Mapoly0107s0028 [GO:0008168] methyltransferase activity; [PF00590] Tetrapyrrole (Corrin/Porphyrin) Methylases; [PTHR10882:SF0] DIPHTHINE SYNTHASE; [GO:0008152] metabolic process; [PTHR10882] DIPHTHINE SYNTHASE; [2.1.1.98] Diphthine synthase.; [K00586] diphthine synthase [EC:2.1.1.98]; [KOG3123] Diphthine synthase79.550.6887
47 Mapoly0006s0092 [PTHR24012] FAMILY NOT NAMED; [KOG0131] Splicing factor 3b, subunit 4; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)79.670.6929
48 Mapoly0053s0094 [K07442] tRNA (adenine-N1-)-methyltransferase catalytic subunit [EC:2.1.1.36]; [GO:0031515] tRNA (m1A) methyltransferase complex; [GO:0030488] tRNA methylation; [PTHR12133] UNCHARACTERIZED METHYLTRANSFERASE; [PTHR12133:SF2] UNCHARACTERIZED METHYLTRANSFERASE; [2.1.1.36] Transferred entry: 2.1.1.217, 2.1.1.218, 2.1.1.219 and 2.1.1.220.; [PF08704] tRNA methyltransferase complex GCD14 subunit; [GO:0016429] tRNA (adenine-N1-)-methyltransferase activity; [KOG2915] tRNA(1-methyladenosine) methyltransferase, subunit GCD1482.510.7029
49 Mapoly0096s0033 -83.180.6151
50 Mapoly0026s0053 [PF00190] Cupin; [GO:0045735] nutrient reservoir activity; [PTHR31238] FAMILY NOT NAMED83.770.6439
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