Guide Gene

Gene ID
Mapoly0058s0026
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR13191] RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED; [PF12923] Ribosomal RNA-processing protein 7 (RRP7); [K14545] ribosomal RNA-processing protein 7

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0058s0026 [PTHR13191] RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED; [PF12923] Ribosomal RNA-processing protein 7 (RRP7); [K14545] ribosomal RNA-processing protein 7 0.00 1.0000
1 Mapoly0091s0022 [KOG1521] RNA polymerase I and III, subunit RPA40/RPC40; [GO:0046983] protein dimerization activity; [PTHR11800:SF13] DNA-DIRECTED RNA POLYMERASE I; [PF01000] RNA polymerase Rpb3/RpoA insert domain; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PTHR11800] DNA-DIRECTED RNA POLYMERASE; [PF01193] RNA polymerase Rpb3/Rpb11 dimerisation domain2.830.8348
2 Mapoly0146s0011 [PTHR13387] FAMILY NOT NAMED; [PF04063] Domain of unknown function (DUF383); [KOG2973] Uncharacterized conserved protein; [PF04064] Domain of unknown function (DUF384)2.830.8332
3 Mapoly0044s0007 [KOG2971] RNA-binding protein required for biogenesis of the ribosomal 60S subunit; [PTHR13634] RIBOSOME BIOGENESIS PROTEIN BRIX; [PF04427] Brix domain3.460.8432
4 Mapoly0098s0050 [KOG3031] Protein required for biogenesis of the ribosomal 60S subunit; [PTHR12728] BRIX DOMAIN CONTAINING PROTEIN; [PTHR12728:SF0] SUBFAMILY NOT NAMED; [PF04427] Brix domain4.900.8333
5 Mapoly0098s0036 [GO:0005840] ribosome; [GO:0003723] RNA binding; [PTHR13718] RIBOSOMAL S SUBUNIT; [PF00333] Ribosomal protein S5, N-terminal domain; [GO:0003735] structural constituent of ribosome; [GO:0006412] translation; [PF03719] Ribosomal protein S5, C-terminal domain8.830.8252
6 Mapoly0064s0065 [PF13656] RNA polymerase Rpb3/Rpb11 dimerisation domain; [PTHR13946:SF16] DNA-DIRECTED RNA POLYMERASE II 13.3 KDA POLYPEPTIDE; [PTHR13946] DNA-DIRECTED RNA POLYMERASE I,II,III; [KOG3438] DNA-directed RNA polymerase, subunit L; [2.7.7.6] DNA-directed RNA polymerase.; [K03020] DNA-directed RNA polymerases I and III subunit RPAC29.950.8165
7 Mapoly0013s0057 [PTHR23105] RIBOSOMAL PROTEIN L7AE FAMILY MEMBER; [KOG3167] Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation; [PF01248] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; [K11129] H/ACA ribonucleoprotein complex subunit 2; [PTHR23105:SF12] NUCLEOLAR PROTEIN FAMILY A MEMBER 213.420.8173
8 Mapoly0037s0098 [KOG3089] Predicted DEAD-box-containing helicase; [PTHR24030] FAMILY NOT NAMED; [PF14617] U3-containing 90S pre-ribosomal complex subunit13.600.8302
9 Mapoly0143s0027 [PTHR22851] U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEIN; [PTHR22851:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [KOG0268] Sof1-like rRNA processing protein (contains WD40 repeats); [K11806] WD repeat and SOF domain-containing protein 1; [PF04158] Sof1-like domain; [PF00400] WD domain, G-beta repeat14.250.8229
10 Mapoly0006s0064 [PTHR23002] ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN; [PF14392] Zinc knuckle; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [GO:0003676] nucleic acid binding14.830.8173
11 Mapoly0063s0053 [GO:0003723] RNA binding; [PTHR12686] 3'-5' EXORIBONUCLEASE CSL4-RELATED; [PF14382] Exosome complex exonuclease RRP4 N-terminal region; [KOG3409] Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4); [K07573] exosome complex component CSL4; [PF10447] Exosome component EXOSC1/CSL4; [PTHR12686:SF8] SUBFAMILY NOT NAMED; [GO:0000178] exosome (RNase complex)17.660.7853
12 Mapoly0060s0029 [PF15370] Domain of unknown function (DUF4598)19.210.7643
13 Mapoly0031s0129 [K14561] U3 small nucleolar ribonucleoprotein protein IMP4; [KOG2781] U3 small nucleolar ribonucleoprotein (snoRNP) component; [PTHR22734] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4; [PF04427] Brix domain21.540.8215
14 Mapoly0128s0026 [GO:0005840] ribosome; [K02961] small subunit ribosomal protein S17; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [KOG1740] Predicted mitochondrial/chloroplast ribosomal protein S17; [PF00366] Ribosomal protein S17; [GO:0006412] translation; [PTHR10744] 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER22.050.7811
15 Mapoly0107s0028 [GO:0008168] methyltransferase activity; [PF00590] Tetrapyrrole (Corrin/Porphyrin) Methylases; [PTHR10882:SF0] DIPHTHINE SYNTHASE; [GO:0008152] metabolic process; [PTHR10882] DIPHTHINE SYNTHASE; [2.1.1.98] Diphthine synthase.; [K00586] diphthine synthase [EC:2.1.1.98]; [KOG3123] Diphthine synthase22.960.7789
16 Mapoly0053s0094 [K07442] tRNA (adenine-N1-)-methyltransferase catalytic subunit [EC:2.1.1.36]; [GO:0031515] tRNA (m1A) methyltransferase complex; [GO:0030488] tRNA methylation; [PTHR12133] UNCHARACTERIZED METHYLTRANSFERASE; [PTHR12133:SF2] UNCHARACTERIZED METHYLTRANSFERASE; [2.1.1.36] Transferred entry: 2.1.1.217, 2.1.1.218, 2.1.1.219 and 2.1.1.220.; [PF08704] tRNA methyltransferase complex GCD14 subunit; [GO:0016429] tRNA (adenine-N1-)-methyltransferase activity; [KOG2915] tRNA(1-methyladenosine) methyltransferase, subunit GCD1423.090.8134
17 Mapoly0103s0075 [PTHR13483:SF3] SUBFAMILY NOT NAMED; [PF04438] HIT zinc finger; [PTHR13483] UNCHARACTERIZED23.370.7625
18 Mapoly0087s0082 [PF12298] Eukaryotic mitochondrial regulator protein23.620.7403
19 Mapoly0005s0264 [PF03725] 3' exoribonuclease family, domain 2; [PTHR11097] EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN); [KOG1614] Exosomal 3'-5' exoribonuclease complex, subunit Rrp45; [PF01138] 3' exoribonuclease family, domain 123.960.8106
20 Mapoly0007s0196 [KOG4655] U3 small nucleolar ribonucleoprotein (snoRNP) component; [GO:0003723] RNA binding; [PTHR11831:SF1] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3; [PTHR11831] 30S 40S RIBOSOMAL PROTEIN; [GO:0019843] rRNA binding; [PF00163] Ribosomal protein S4/S9 N-terminal domain; [GO:0005622] intracellular; [K14560] U3 small nucleolar ribonucleoprotein protein IMP3; [PF01479] S4 domain26.530.7598
21 Mapoly0006s0036 [KOG3164] Uncharacterized proteins of PilT N-term./Vapc superfamily; [PF04900] Fcf1; [PTHR12416] UNCHARACTERIZED; [GO:0032040] small-subunit processome30.500.8077
22 Mapoly0115s0026 [KOG4134] DNA-dependent RNA polymerase I; [PTHR12709] DNA-DIRECTED RNA POLYMERASE II, III31.750.8138
23 Mapoly0001s0278 [PF03690] Uncharacterised protein family (UPF0160); [PTHR11215:SF0] SUBFAMILY NOT NAMED; [KOG2948] Predicted metal-binding protein; [PTHR11215] METAL DEPENDENT HYDROLASE - RELATED32.000.8040
24 Mapoly0033s0149 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED32.330.7159
25 Mapoly0086s0024 [GO:0001522] pseudouridine synthesis; [GO:0031429] box H/ACA snoRNP complex; [GO:0042254] ribosome biogenesis; [K11128] H/ACA ribonucleoprotein complex subunit 1; [KOG3262] H/ACA small nucleolar RNP component GAR1; [PF04410] Gar1/Naf1 RNA binding region; [PTHR23237] NUCLEOLAR PROTEIN FAMILY A MEMBER 1 (SNORNP PROTEIN GAR1)32.560.7493
26 Mapoly0063s0083 [KOG3492] Ribosome biogenesis protein NIP7; [K07565] 60S ribosome subunit biogenesis protein NIP7; [PF03657] Uncharacterised protein family (UPF0113); [PTHR23415:SF4] 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7; [PTHR23415] CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP732.860.7659
27 Mapoly0110s0002 [PTHR13296:SF0] SUBFAMILY NOT NAMED; [K12861] pre-mRNA-splicing factor SPF27; [KOG3096] Spliceosome-associated coiled-coil protein; [PTHR13296] BCAS2 PROTEIN; [GO:0006397] mRNA processing; [PF05700] Breast carcinoma amplified sequence 2 (BCAS2)33.240.8019
28 Mapoly0006s0010 [PTHR21568] UNCHARACTERIZED; [KOG2364] Predicted pseudouridylate synthase34.640.7268
29 Mapoly0153s0027 [PTHR22889] UNCHARACTERIZED; [KOG1188] WD40 repeat protein; [GO:0005515] protein binding; [PF00400] WD domain, G-beta repeat35.410.7898
30 Mapoly0007s0029 [KOG3165] Predicted nucleic-acid-binding protein, contains PIN domain; [PF04900] Fcf1; [PTHR12416] UNCHARACTERIZED; [GO:0032040] small-subunit processome; [K14566] U3 small nucleolar RNA-associated protein 2437.500.7676
31 Mapoly0063s0069 [PTHR32379] FAMILY NOT NAMED; [KOG1709] Guanidinoacetate methyltransferase and related proteins; [PF12796] Ankyrin repeats (3 copies)38.730.7938
32 Mapoly0032s0043 [PF03725] 3' exoribonuclease family, domain 2; [PTHR11097:SF8] EXOSOME COMPLEX EXONUCLEASE RRP45 (POLYMYOSITIS/SCLERODERMA AUTOANTIGEN 1) (RIBOSOMAL RNA PROCESSING PROTEIN 45); [KOG1612] Exosomal 3'-5' exoribonuclease complex, subunit Rrp42; [PTHR11097] EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN); [PF01138] 3' exoribonuclease family, domain 1; [K12589] exosome complex component RRP4239.600.7528
33 Mapoly0097s0041 [PTHR12661] PETER PAN-RELATED; [PTHR12661:SF5] SUBFAMILY NOT NAMED; [KOG2963] RNA-binding protein required for 60S ribosomal subunit biogenesis; [PF04427] Brix domain40.250.7961
34 Mapoly0094s0032 [PF08576] Eukaryotic protein of unknown function (DUF1764)40.990.7451
35 Mapoly0062s0065 [GO:0005524] ATP binding; [PTHR24031:SF96] LOC553462 PROTEIN (FRAGMENT); [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [KOG0346] RNA helicase41.110.7816
36 Mapoly0036s0028 [PF04939] Ribosome biogenesis regulatory protein (RRS1); [KOG1765] Regulator of ribosome synthesis; [GO:0042254] ribosome biogenesis; [GO:0005634] nucleus; [PTHR17602] RIBOSOME BIOGENESIS REGULATORY PROTEIN44.270.7804
37 Mapoly0001s0498 [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [KOG0294] WD40 repeat-containing protein; [PF00400] WD domain, G-beta repeat44.430.7916
38 Mapoly0009s0101 [PF09285] Elongation factor P, C-terminal; [GO:0003746] translation elongation factor activity; [GO:0006414] translational elongation; [GO:0005737] cytoplasm; [GO:0043043] peptide biosynthetic process; [PF08207] Elongation factor P (EF-P) KOW-like domain; [PF01132] Elongation factor P (EF-P) OB domain; [PTHR30053] ELONGATION FACTOR P44.830.6047
39 Mapoly0121s0015 [KOG4205] RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)46.370.7829
40 Mapoly0088s0068 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [PTHR12029] RNA METHYLTRANSFERASE; [PF00588] SpoU rRNA Methylase family; [GO:0008173] RNA methyltransferase activity; [KOG0838] RNA Methylase, SpoU family46.580.6455
41 Mapoly0168s0007 [PTHR10252:SF25] SUBFAMILY NOT NAMED; [GO:0043565] sequence-specific DNA binding; [PF00808] Histone-like transcription factor (CBF/NF-Y) and archaeal histone; [GO:0005622] intracellular; [PTHR10252] HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED49.570.7184
42 Mapoly0006s0099 [PTHR13261] CDK INHIBITOR P21 BINDING PROTEIN; [KOG3034] Isoamyl acetate-hydrolyzing esterase and related enzymes; [PF13862] p21-C-terminal region-binding protein49.840.7715
43 Mapoly0051s0055 [PTHR18359] WD-REPEAT PROTEIN-RELATED; [GO:0005515] protein binding; [KOG2055] WD40 repeat protein; [K14553] U3 small nucleolar RNA-associated protein 18; [PF00400] WD domain, G-beta repeat50.080.7945
44 Mapoly0140s0011 [KOG3080] Nucleolar protein-like/EBNA1-binding protein; [PTHR13028] RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED; [PF05890] Eukaryotic rRNA processing protein EBP2; [PTHR13028:SF0] SUBFAMILY NOT NAMED51.530.7417
45 Mapoly0102s0005 [PF06962] Putative rRNA methylase52.540.7183
46 Mapoly0028s0079 [PF01981] Peptidyl-tRNA hydrolase PTH2; [3.1.1.29] Aminoacyl-tRNA hydrolase.; [K04794] peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29]; [KOG3282] Uncharacterized conserved protein; [PTHR12649] PEPTIDYL-TRNA HYDROLASE 2; [GO:0004045] aminoacyl-tRNA hydrolase activity52.920.7518
47 Mapoly0012s0185 [GO:0055114] oxidation-reduction process; [GO:0009396] folic acid-containing compound biosynthetic process; [GO:0004488] methylenetetrahydrofolate dehydrogenase (NADP+) activity; [PTHR10025] TETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE FAMILY MEMBER; [PF02882] Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; [PF00763] Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; [GO:0003824] catalytic activity; [KOG0089] Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase53.360.7323
48 Mapoly0020s0167 [PF03725] 3' exoribonuclease family, domain 2; [KOG1068] Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases; [K11600] exosome complex component RRP41; [PTHR11953] RIBONUCLEASE PH RELATED; [PF01138] 3' exoribonuclease family, domain 1; [PTHR11953:SF0] SUBFAMILY NOT NAMED53.620.7016
49 Mapoly0010s0007 [PF00574] Clp protease; [3.4.21.92] Endopeptidase Clp.; [K01358] ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; [PTHR10381] ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT; [KOG0840] ATP-dependent Clp protease, proteolytic subunit54.700.6621
50 Mapoly0148s0006 [PF07890] Rrp15p; [PTHR13245] FAMILY NOT NAMED55.930.7758
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