Guide Gene

Gene ID
Mapoly0061s0115
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR23079] RNA-DEPENDENT RNA POLYMERASE; [GO:0003968] RNA-directed RNA polymerase activity; [PTHR23079:SF1] RNA-DEPENDENT RNA POLYMERASE; [KOG0988] RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference; [PF05183] RNA dependent RNA polymerase

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0061s0115 [PTHR23079] RNA-DEPENDENT RNA POLYMERASE; [GO:0003968] RNA-directed RNA polymerase activity; [PTHR23079:SF1] RNA-DEPENDENT RNA POLYMERASE; [KOG0988] RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference; [PF05183] RNA dependent RNA polymerase 0.00 1.0000
1 Mapoly0112s0020 -1.000.7245
2 Mapoly0143s0016 -4.240.7206
3 Mapoly0067s0030 [KOG0254] Predicted transporter (major facilitator superfamily); [PF00083] Sugar (and other) transporter; [GO:0016021] integral to membrane; [PTHR24063:SF148] PUTATIVE UNCHARACTERIZED PROTEIN; [GO:0055085] transmembrane transport; [GO:0022857] transmembrane transporter activity; [PTHR24063] FAMILY NOT NAMED4.470.6327
4 Mapoly0019s0126 [PTHR10994] RETICULON; [PF03407] Nucleotide-diphospho-sugar transferase10.390.6567
5 Mapoly0001s0415 [PF05641] Agenet domain11.400.6943
6 Mapoly0049s0078 [KOG4317] Predicted Zn-finger protein; [PTHR15555] ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 (PROTEIN FON)-RELATED; [PTHR15555:SF0] SUBFAMILY NOT NAMED; [PF04438] HIT zinc finger14.000.5564
7 Mapoly0005s0237 -16.430.6626
8 Mapoly0014s0121 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG0390] DNA repair protein, SNF2 family; [PF00271] Helicase conserved C-terminal domain17.750.7061
9 Mapoly0072s0016 [GO:0005515] protein binding; [PTHR15398] BROMODOMAIN-CONTAINING PROTEIN 8; [PF00439] Bromodomain; [K11321] bromodomain-containing protein 8; [PTHR15398:SF0] SUBFAMILY NOT NAMED18.220.6982
10 Mapoly0067s0087 [PF04788] Protein of unknown function (DUF620); [PTHR31300] FAMILY NOT NAMED18.330.6418
11 Mapoly0122s0032 [PF14695] Lines C-terminus18.730.6566
12 Mapoly0043s0131 [PF06465] Domain of Unknown Function (DUF1087)20.320.6779
13 Mapoly0006s0115 [PTHR32133] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF00646] F-box domain20.980.6617
14 Mapoly0115s0071 [GO:0005515] protein binding; [PF13414] TPR repeat; [PF00226] DnaJ domain; [PF00515] Tetratricopeptide repeat; [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER; [KOG0550] Molecular chaperone (DnaJ superfamily)21.910.6002
15 Mapoly0031s0063 [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family24.450.6228
16 Mapoly0111s0041 -25.000.5392
17 Mapoly0005s0111 [PF13414] TPR repeat; [PTHR23083] TETRATRICOPEPTIDE REPEAT PROTEIN, TPR28.460.6782
18 Mapoly0001s0125 -31.450.6288
19 Mapoly0134s0010 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [PF12726] SEN1 N terminal; [PF13086] AAA domain; [KOG2812] Uncharacterized conserved protein; [PF13087] AAA domain32.740.6734
20 Mapoly0082s0054 [PF10358] N-terminal C2 in EEIG1 and EHBP1 proteins; [PTHR31593] FAMILY NOT NAMED; [PTHR31593:SF0] SUBFAMILY NOT NAMED34.600.6361
21 Mapoly0121s0022 [PTHR31485] FAMILY NOT NAMED35.510.5569
22 Mapoly0002s0219 [PTHR22684] NULP1-RELATED; [PF04910] Transcriptional repressor TCF25; [KOG2422] Uncharacterized conserved protein; [PTHR22684:SF0] SUBFAMILY NOT NAMED36.000.5477
23 Mapoly0152s0016 [KOG1771] GPI-alpha-mannosyltransferase III (GPI10/PIG-B) involved in glycosylphosphatidylinositol anchor biosynthesis; [K05286] phosphatidylinositol glycan, class B [EC:2.4.1.-]; [PF03901] Alg9-like mannosyltransferase family; [PTHR22760] GLYCOSYLTRANSFERASE; [GO:0016757] transferase activity, transferring glycosyl groups; [2.4.1.-] Hexosyltransferases.37.990.5469
24 Mapoly0054s0054 [KOG3276] Uncharacterized conserved protein, contains YggU domain; [PTHR13420:SF1] gb def: y66d12a.8.p [caenorhabditis elegans]; [K09131] hypothetical protein; [PTHR13420] UNCHARACTERIZED; [PF02594] Uncharacterised ACR, YggU family COG187241.670.5834
25 Mapoly0177s0009 [KOG2641] Predicted seven transmembrane receptor - rhodopsin family; [PTHR23423] ORGANIC SOLUTE TRANSPORTER-RELATED; [PF03619] Organic solute transporter Ostalpha43.490.5837
26 Mapoly0002s0028 [PF00630] Filamin/ABP280 repeat; [GO:0003676] nucleic acid binding; [KOG0146] RNA-binding protein ETR-3 (RRM superfamily); [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)47.530.6709
27 Mapoly0030s0147 [GO:0005524] ATP binding; [PF01928] CYTH domain; [KOG3308] Uncharacterized protein of the uridine kinase family; [PF00485] Phosphoribulokinase / Uridine kinase family; [GO:0008152] metabolic process; [GO:0016301] kinase activity; [PTHR10285] URIDINE KINASE51.960.5154
28 Mapoly0001s0195 [GO:0070985] TFIIK complex; [GO:0006355] regulation of transcription, DNA-dependent; [GO:0016538] cyclin-dependent protein serine/threonine kinase regulator activity; [GO:0019901] protein kinase binding; [PTHR10026:SF8] CYCLIN H; [PF00134] Cyclin, N-terminal domain; [PTHR10026] CYCLIN; [KOG2496] Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit; [GO:0006351] transcription, DNA-dependent; [GO:0000079] regulation of cyclin-dependent protein serine/threonine kinase activity53.220.6271
29 Mapoly0058s0092 -53.850.5854
30 Mapoly0045s0077 [PTHR11807:SF2] CELL CYCLE PROTEIN MESJ; [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [PTHR11807] ATPASES OF THE PP SUPERFAMILY-RELATED; [GO:0016879] ligase activity, forming carbon-nitrogen bonds; [PF01171] PP-loop family; [GO:0008033] tRNA processing54.990.6297
31 Mapoly0218s0012 [PTHR15744:SF0] SUBFAMILY NOT NAMED; [PTHR15744] BLOM756.380.6392
32 Mapoly0012s0196 -57.710.5604
33 Mapoly0080s0093 [GO:0003677] DNA binding; [PF00046] Homeobox domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR12628] POLYCOMB-LIKE TRANSCRIPTION FACTOR57.840.6537
34 Mapoly0143s0017 -59.580.6263
35 Mapoly0007s0174 [KOG1591] Prolyl 4-hydroxylase alpha subunit; [GO:0055114] oxidation-reduction process; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PF13640] 2OG-Fe(II) oxygenase superfamily; [GO:0016491] oxidoreductase activity; [PTHR10869] PROLYL 4-HYDROXYLASE ALPHA SUBUNIT; [1.14.11.2] Procollagen-proline dioxygenase.; [K00472] prolyl 4-hydroxylase [EC:1.14.11.2]63.690.5533
36 Mapoly0069s0028 [3.1.27.-] Endoribonucleases producing other than 5'-phosphomonoesters.; [PF07521] RNA-metabolising metallo-beta-lactamase; [PTHR11203] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; [PF11718] Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; [KOG1137] mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit); [PF00753] Metallo-beta-lactamase superfamily; [K14403] cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]; [PF10996] Beta-Casp domain; [PTHR11203:SF32] UNCHARACTERIZED66.950.6178
37 Mapoly0054s0103 [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [3.6.4.13] RNA helicase.; [KOG0923] mRNA splicing factor ATP-dependent RNA helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold; [K12813] pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13]69.390.6425
38 Mapoly0046s0024 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [PF00097] Zinc finger, C3HC4 type (RING finger); [GO:0008270] zinc ion binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [PF01485] IBR domain; [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold; [GO:0046872] metal ion binding69.910.5151
39 Mapoly0044s0127 [KOG4172] Predicted E3 ubiquitin ligase; [PTHR23041] RING FINGER DOMAIN-CONTAINING; [PF13923] Zinc finger, C3HC4 type (RING finger)70.100.5150
40 Mapoly0084s0085 [PTHR21717] TELOMERIC REPEAT BINDING PROTEIN; [PTHR21717:SF9] TELOMERIC REPEAT BINDING PROTEIN 172.470.5959
41 Mapoly0101s0047 [KOG2084] Predicted histone tail methylase containing SET domain; [GO:0005515] protein binding; [PF00856] SET domain; [K11426] SET and MYND domain-containing protein; [PTHR12197] SET AND MYND DOMAIN CONTAINING; [PF01753] MYND finger73.200.5451
42 Mapoly0043s0039 [GO:0005524] ATP binding; [PTHR23069] TAT-BINDING HOMOLOG 7; [KOG0737] AAA+-type ATPase; [PF00004] ATPase family associated with various cellular activities (AAA); [PF13771] PHD-like zinc-binding domain75.240.6084
43 Mapoly0144s0001 [PF08312] cwf21 domain; [PTHR23140:SF0] SUBFAMILY NOT NAMED; [PTHR23140] RNA PROCESSING PROTEIN LD23810P77.730.5930
44 Mapoly0001s0473 -78.230.6390
45 Mapoly0093s0070 -80.390.4546
46 Mapoly0179s0022 [PTHR10857] COPINE; [PF10539] Development and cell death domain82.670.6108
47 Mapoly0015s0190 -85.320.6157
48 Mapoly0014s0007 [PF12695] Alpha/beta hydrolase family85.560.5416
49 Mapoly0114s0035 [PTHR31169] FAMILY NOT NAMED; [PF10497] Zinc-finger domain of monoamine-oxidase A repressor R186.740.6296
50 Mapoly0001s0318 [3.4.24.-] Metalloendopeptidases.; [GO:0005524] ATP binding; [GO:0004222] metalloendopeptidase activity; [K03798] cell division protease FtsH [EC:3.4.24.-]; [KOG0731] AAA+-type ATPase containing the peptidase M41 domain; [PF01434] Peptidase family M41; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis87.180.5248
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