Guide Gene

Gene ID
Mapoly0028s0136
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[KOG0157] Cytochrome P450 CYP4/CYP19/CYP26 subfamilies; [GO:0005506] iron ion binding; [GO:0055114] oxidation-reduction process; [GO:0016705] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; [PTHR24290] FAMILY NOT NAMED; [GO:0020037] heme binding; [K09837] carotenoid epsilon-ring hydroxylase; [PF00067] Cytochrome P450

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0028s0136 [KOG0157] Cytochrome P450 CYP4/CYP19/CYP26 subfamilies; [GO:0005506] iron ion binding; [GO:0055114] oxidation-reduction process; [GO:0016705] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; [PTHR24290] FAMILY NOT NAMED; [GO:0020037] heme binding; [K09837] carotenoid epsilon-ring hydroxylase; [PF00067] Cytochrome P450 0.00 1.0000
1 Mapoly0040s0099 [6.6.1.1] Magnesium chelatase.; [GO:0016851] magnesium chelatase activity; [PF01078] Magnesium chelatase, subunit ChlI; [GO:0015995] chlorophyll biosynthetic process; [K03405] magnesium chelatase subunit I [EC:6.6.1.1]; [GO:0015979] photosynthesis4.000.9248
2 Mapoly0112s0045 [GO:0004659] prenyltransferase activity; [K02548] 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-]; [PTHR13929] 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE; [GO:0016021] integral to membrane; [2.5.1.74] 1,4-dihydroxy-2-naphthoate polyprenyltransferase.; [KOG4581] Predicted membrane protein; [PF01040] UbiA prenyltransferase family4.240.9042
3 Mapoly0043s0143 [PF00687] Ribosomal protein L1p/L10e family; [PTHR23105] RIBOSOMAL PROTEIN L7AE FAMILY MEMBER; [KOG1569] 50S ribosomal protein L14.690.9192
4 Mapoly0101s0008 [PF13768] von Willebrand factor type A domain; [PTHR10338] VON WILLEBRAND FACTOR, TYPE A DOMAIN CONTAINING5.290.8602
5 Mapoly0030s0118 [PTHR24316] FAMILY NOT NAMED; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [KOG1208] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); [PF00106] short chain dehydrogenase; [1.3.1.33] Protochlorophyllide reductase.; [K00218] protochlorophyllide reductase [EC:1.3.1.33]7.210.8944
6 Mapoly0055s0018 [GO:0003723] RNA binding; [K03595] GTP-binding protein Era; [PTHR11649:SF3] GTP-BINDING PROTEIN ERA; [PF01926] 50S ribosome-binding GTPase; [KOG1423] Ras-like GTPase ERA; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [PF07650] KH domain; [GO:0005525] GTP binding10.100.8889
7 Mapoly0002s0171 [KOG1267] Mitochondrial transcription termination factor, mTERF; [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED10.720.8923
8 Mapoly0015s0060 [GO:0004418] hydroxymethylbilane synthase activity; [PF03900] Porphobilinogen deaminase, C-terminal domain; [2.5.1.61] Hydroxymethylbilane synthase.; [K01749] hydroxymethylbilane synthase [EC:2.5.1.61]; [KOG2892] Porphobilinogen deaminase; [PF01379] Porphobilinogen deaminase, dipyromethane cofactor binding domain; [PTHR11557:SF0] SUBFAMILY NOT NAMED; [GO:0033014] tetrapyrrole biosynthetic process; [PTHR11557] PORPHOBILINOGEN DEAMINASE17.320.8731
9 Mapoly0069s0053 [GO:0050660] flavin adenine dinucleotide binding; [K03495] glucose inhibited division protein A; [PTHR11806:SF1] GLUCOSE INHIBITED DIVISION PROTEIN A; [PTHR11806] GLUCOSE INHIBITED DIVISION PROTEIN A; [PF01134] Glucose inhibited division protein A; [KOG2311] NAD/FAD-utilizing protein possibly involved in translation; [GO:0008033] tRNA processing; [PF13932] GidA associated domain 317.660.8625
10 Mapoly0048s0095 [GO:0016020] membrane; [GO:0005524] ATP binding; [GO:0017038] protein import; [PF07516] SecA Wing and Scaffold domain; [PTHR30612] SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM; [PF07517] SecA DEAD-like domain; [PF01043] SecA preprotein cross-linking domain; [K03070] preprotein translocase subunit SecA18.030.8624
11 Mapoly0005s0279 [PTHR13343] CREG1 PROTEIN; [PF13883] Pyridoxamine 5'-phosphate oxidase; [PF10615] Protein of unknown function (DUF2470)18.170.8805
12 Mapoly0039s0053 [GO:0055114] oxidation-reduction process; [GO:0006779] porphyrin-containing compound biosynthetic process; [K00228] coproporphyrinogen III oxidase [EC:1.3.3.3]; [PF01218] Coproporphyrinogen III oxidase; [PTHR10755] COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL; [1.3.3.3] Coproporphyrinogen oxidase.; [GO:0004109] coproporphyrinogen oxidase activity; [PTHR10755:SF0] COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL; [KOG1518] Coproporphyrinogen III oxidase CPO/HEM1318.520.8876
13 Mapoly0154s0018 [PF13460] NADH(P)-binding; [KOG1203] Predicted dehydrogenase; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED18.710.8739
14 Mapoly0113s0009 [PF12638] Staygreen protein; [PTHR31750] FAMILY NOT NAMED19.080.8764
15 Mapoly0103s0078 [GO:0006779] porphyrin-containing compound biosynthetic process; [PTHR21091] METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED; [KOG2872] Uroporphyrinogen decarboxylase; [PF01208] Uroporphyrinogen decarboxylase (URO-D); [GO:0004853] uroporphyrinogen decarboxylase activity19.600.8803
16 Mapoly0191s0001 [GO:0003723] RNA binding; [GO:0003746] translation elongation factor activity; [GO:0006414] translational elongation; [GO:0005515] protein binding; [PTHR11741] ELONGATION FACTOR TS; [PTHR11741:SF1] gb def: putative mitochondrial elongation factor ts [schizosaccharomyces pombe]; [PF00575] S1 RNA binding domain; [GO:0005622] intracellular; [PF00627] UBA/TS-N domain; [PF00889] Elongation factor TS; [KOG1071] Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt19.600.8876
17 Mapoly0157s0020 [GO:0015031] protein transport; [GO:0006457] protein folding; [PF05698] Bacterial trigger factor protein (TF) C-terminus; [PF05697] Bacterial trigger factor protein (TF); [PTHR30560] TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE21.000.8859
18 Mapoly0195s0004 [PF02775] Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; [PTHR18968] THIAMINE PYROPHOSPHATE ENZYMES; [PF00425] chorismate binding enzyme; [PF13378] Enolase C-terminal domain-like; [GO:0030976] thiamine pyrophosphate binding; [KOG1223] Isochorismate synthase; [GO:0003824] catalytic activity; [PF12697] Alpha/beta hydrolase family; [PF01188] Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; [PF02776] Thiamine pyrophosphate enzyme, N-terminal TPP binding domain21.140.7960
19 Mapoly0042s0009 [PTHR24012] FAMILY NOT NAMED; [KOG0131] Splicing factor 3b, subunit 4; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)22.580.8710
20 Mapoly0030s0067 [PF00550] Phosphopantetheine attachment site; [PTHR20863] ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED23.470.8681
21 Mapoly0030s0106 [GO:0031072] heat shock protein binding; [KOG0715] Molecular chaperone (DnaJ superfamily); [PF00226] DnaJ domain; [PF01556] DnaJ C terminal domain; [PTHR24076] FAMILY NOT NAMED; [PF00684] DnaJ central domain; [GO:0051082] unfolded protein binding26.740.8320
22 Mapoly0048s0083 [1.17.1.2] 4-hydroxy-3-methylbut-2-enyl diphosphate reductase.; [PTHR31619] FAMILY NOT NAMED; [GO:0051745] 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity; [K03527] 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]; [GO:0019288] isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; [GO:0050992] dimethylallyl diphosphate biosynthetic process; [GO:0046872] metal ion binding; [PF02401] LytB protein29.190.7984
23 Mapoly0033s0078 [GO:0016020] membrane; [PTHR10906:SF2] PROTEIN TRANSLOCASE SECY SUBUNIT; [PF00344] SecY translocase; [GO:0015031] protein transport; [K10956] protein transport protein SEC61 subunit alpha; [PTHR10906] SECY/SEC61-ALPHA FAMILY MEMBER29.390.8717
24 Mapoly0068s0103 [GO:0008168] methyltransferase activity; [PF08241] Methyltransferase domain; [GO:0008152] metabolic process; [KOG4300] Predicted methyltransferase29.390.8533
25 Mapoly0096s0068 [PF04535] Domain of unknown function (DUF588)30.280.8035
26 Mapoly0030s0051 [GO:0016020] membrane; [PF01758] Sodium Bile acid symporter family; [GO:0008508] bile acid:sodium symporter activity; [GO:0006814] sodium ion transport; [K03453] bile acid:Na+ symporter, BASS family; [KOG2718] Na+-bile acid cotransporter; [PTHR10361] SODIUM-BILE ACID COTRANSPORTER31.420.7986
27 Mapoly0033s0150 -31.420.8668
28 Mapoly0034s0091 -31.460.8819
29 Mapoly0027s0106 [PTHR11177] CHITINASE31.610.8532
30 Mapoly0116s0015 [GO:0055114] oxidation-reduction process; [GO:0016491] oxidoreductase activity; [PTHR10617] ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE; [K10960] geranylgeranyl reductase [EC:1.3.1.83]; [PF07992] Pyridine nucleotide-disulphide oxidoreductase; [1.3.1.83] Geranylgeranyl diphosphate reductase.32.880.8426
31 Mapoly0034s0094 [6.6.1.1] Magnesium chelatase.; [PF13519] von Willebrand factor type A domain; [GO:0016851] magnesium chelatase activity; [PF01078] Magnesium chelatase, subunit ChlI; [GO:0015995] chlorophyll biosynthetic process; [K03404] magnesium chelatase subunit D [EC:6.6.1.1]; [GO:0015979] photosynthesis32.940.8537
32 Mapoly0134s0004 [PTHR15020] FLAVIN REDUCTASE-RELATED; [PF13460] NADH(P)-binding; [KOG1502] Flavonol reductase/cinnamoyl-CoA reductase33.670.8603
33 Mapoly0082s0064 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding34.150.8655
34 Mapoly0006s0179 [PF00773] RNB domain; [PTHR23355] RIBONUCLEASE; [KOG2102] Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis336.000.8251
35 Mapoly0049s0121 [PTHR10891:SF372] SUBFAMILY NOT NAMED; [KOG0028] Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein; [GO:0016021] integral to membrane; [GO:0055085] transmembrane transport; [PTHR10891] EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN; [PF01699] Sodium/calcium exchanger protein; [PF13499] EF-hand domain pair; [GO:0005509] calcium ion binding36.180.7788
36 Mapoly0003s0298 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family36.990.8265
37 Mapoly0056s0110 [PF00581] Rhodanese-like domain39.570.8593
38 Mapoly0024s0090 [PF00089] Trypsin; [PTHR22939] SERINE PROTEASE FAMILY S1C HTRA-RELATED; [GO:0005515] protein binding; [PF13180] PDZ domain; [KOG1320] Serine protease; [GO:0004252] serine-type endopeptidase activity; [GO:0006508] proteolysis40.910.8682
39 Mapoly0065s0095 [K01698] porphobilinogen synthase [EC:4.2.1.24]; [PTHR11458:SF0] SUBFAMILY NOT NAMED; [PF00490] Delta-aminolevulinic acid dehydratase; [4.2.1.24] Porphobilinogen synthase.; [GO:0046872] metal ion binding; [KOG2794] Delta-aminolevulinic acid dehydratase; [GO:0033014] tetrapyrrole biosynthetic process; [PTHR11458] PORPHOBILINOGEN SYNTHASE; [GO:0004655] porphobilinogen synthase activity42.360.8626
40 Mapoly0118s0023 -43.450.8554
41 Mapoly0023s0130 [GO:0003723] RNA binding; [PTHR23270] PROGRAMMED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5); [PF00575] S1 RNA binding domain43.950.8434
42 Mapoly0013s0012 [PTHR11624] DEHYDROGENASE RELATED; [K00615] transketolase [EC:2.2.1.1]; [PF00456] Transketolase, thiamine diphosphate binding domain; [GO:0008152] metabolic process; [PF02779] Transketolase, pyrimidine binding domain; [GO:0003824] catalytic activity; [PF02780] Transketolase, C-terminal domain; [2.2.1.1] Transketolase.; [KOG0523] Transketolase45.030.8254
43 Mapoly0112s0034 [KOG1270] Methyltransferases; [GO:0046406] magnesium protoporphyrin IX methyltransferase activity; [PTHR10108] METHYLTRANSFERASE; [2.1.1.11] Magnesium protoporphyrin IX methyltransferase.; [GO:0015995] chlorophyll biosynthetic process; [PF07109] Magnesium-protoporphyrin IX methyltransferase C-terminus; [PTHR10108:SF269] BLL8020 PROTEIN; [K03428] magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11]46.480.8584
44 Mapoly0178s0020 [PF13414] TPR repeat; [PTHR23083] TETRATRICOPEPTIDE REPEAT PROTEIN, TPR47.250.8255
45 Mapoly0008s0037 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [KOG1337] N-methyltransferase; [PF09273] Rubisco LSMT substrate-binding49.600.8480
46 Mapoly0058s0049 [PF13460] NADH(P)-binding; [KOG1203] Predicted dehydrogenase; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED56.320.8345
47 Mapoly0065s0007 [PTHR12934] 50S RIBOSOMAL PROTEIN L15; [KOG0846] Mitochondrial/chloroplast ribosomal protein L15/L10; [PF00828] Ribosomal protein L18e/L15; [GO:0003735] structural constituent of ribosome; [PTHR12934:SF2] 50S RIBOSOMAL PROTEIN L15; [GO:0015934] large ribosomal subunit; [GO:0006412] translation; [K02876] large subunit ribosomal protein L1556.780.8620
48 Mapoly0024s0038 [GO:0002161] aminoacyl-tRNA editing activity; [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PF08264] Anticodon-binding domain of tRNA; [6.1.1.4] Leucine--tRNA ligase.; [KOG0435] Leucyl-tRNA synthetase; [PF13603] Leucyl-tRNA synthetase, Domain 2; [PTHR11946:SF7] LEUCYL-TRNA SYNTHETASE; [GO:0004823] leucine-tRNA ligase activity; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [GO:0006429] leucyl-tRNA aminoacylation; [K01869] leucyl-tRNA synthetase [EC:6.1.1.4]; [PF09334] tRNA synthetases class I (M); [PF00133] tRNA synthetases class I (I, L, M and V); [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity57.730.8162
49 Mapoly0153s0005 [PF06485] Protein of unknown function (DUF1092)57.910.8473
50 Mapoly0040s0096 [GO:0009523] photosystem II; [PTHR31407] FAMILY NOT NAMED; [GO:0019898] extrinsic to membrane; [K02717] photosystem II oxygen-evolving enhancer protein 2; [GO:0009654] oxygen evolving complex; [PF01789] PsbP; [GO:0005509] calcium ion binding; [GO:0015979] photosynthesis57.970.8669
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