Guide Gene

Gene ID
Mapoly0048s0083
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[1.17.1.2] 4-hydroxy-3-methylbut-2-enyl diphosphate reductase.; [PTHR31619] FAMILY NOT NAMED; [GO:0051745] 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity; [K03527] 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]; [GO:0019288] isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; [GO:0050992] dimethylallyl diphosphate biosynthetic process; [GO:0046872] metal ion binding; [PF02401] LytB protein

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0048s0083 [1.17.1.2] 4-hydroxy-3-methylbut-2-enyl diphosphate reductase.; [PTHR31619] FAMILY NOT NAMED; [GO:0051745] 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity; [K03527] 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]; [GO:0019288] isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; [GO:0050992] dimethylallyl diphosphate biosynthetic process; [GO:0046872] metal ion binding; [PF02401] LytB protein 0.00 1.0000
1 Mapoly0163s0012 [GO:0003723] RNA binding; [GO:0005524] ATP binding; [PF00579] tRNA synthetases class I (W and Y); [PTHR11766:SF0] SUBFAMILY NOT NAMED; [GO:0000166] nucleotide binding; [KOG2623] Tyrosyl-tRNA synthetase; [K01866] tyrosyl-tRNA synthetase [EC:6.1.1.1]; [PTHR11766] TYROSYL-TRNA SYNTHETASE; [6.1.1.1] Tyrosine--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [PF01479] S4 domain; [GO:0004831] tyrosine-tRNA ligase activity; [GO:0004812] aminoacyl-tRNA ligase activity8.000.7906
2 Mapoly0116s0015 [GO:0055114] oxidation-reduction process; [GO:0016491] oxidoreductase activity; [PTHR10617] ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE; [K10960] geranylgeranyl reductase [EC:1.3.1.83]; [PF07992] Pyridine nucleotide-disulphide oxidoreductase; [1.3.1.83] Geranylgeranyl diphosphate reductase.9.060.8190
3 Mapoly0030s0118 [PTHR24316] FAMILY NOT NAMED; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [KOG1208] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); [PF00106] short chain dehydrogenase; [1.3.1.33] Protochlorophyllide reductase.; [K00218] protochlorophyllide reductase [EC:1.3.1.33]9.540.8297
4 Mapoly0005s0054 [GO:0003913] DNA photolyase activity; [PTHR11455] CRYPTOCHROME; [PF00875] DNA photolyase; [PF03441] FAD binding domain of DNA photolyase; [GO:0006281] DNA repair16.970.8057
5 Mapoly0048s0084 [GO:0055114] oxidation-reduction process; [PTHR30454] 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE; [1.17.7.1] (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.; [K03526] (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]; [PF04551] GcpE protein; [GO:0016114] terpenoid biosynthetic process; [GO:0046429] 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity21.070.7858
6 Mapoly0058s0049 [PF13460] NADH(P)-binding; [KOG1203] Predicted dehydrogenase; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED22.270.8038
7 Mapoly0031s0030 [PF02575] YbaB/EbfC DNA-binding family22.470.8030
8 Mapoly0096s0070 [GO:0055114] oxidation-reduction process; [PF00141] Peroxidase; [GO:0020037] heme binding; [PTHR31235] FAMILY NOT NAMED; [GO:0006979] response to oxidative stress; [GO:0004601] peroxidase activity24.980.7034
9 Mapoly0155s0027 [PF01370] NAD dependent epimerase/dehydratase family; [GO:0003824] catalytic activity; [GO:0050662] coenzyme binding; [KOG1502] Flavonol reductase/cinnamoyl-CoA reductase; [PTHR10366] NAD DEPENDENT EPIMERASE/DEHYDRATASE27.980.7884
10 Mapoly0028s0136 [KOG0157] Cytochrome P450 CYP4/CYP19/CYP26 subfamilies; [GO:0005506] iron ion binding; [GO:0055114] oxidation-reduction process; [GO:0016705] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; [PTHR24290] FAMILY NOT NAMED; [GO:0020037] heme binding; [K09837] carotenoid epsilon-ring hydroxylase; [PF00067] Cytochrome P45029.190.7984
11 Mapoly0077s0021 [GO:0016020] membrane; [GO:0008762] UDP-N-acetylmuramate dehydrogenase activity; [GO:0003885] D-arabinono-1,4-lactone oxidase activity; [K00225] L-galactono-1,4-lactone dehydrogenase [EC:1.3.2.3]; [GO:0050660] flavin adenine dinucleotide binding; [KOG4730] D-arabinono-1, 4-lactone oxidase; [PTHR13878] GULONOLACTONE OXIDASE; [GO:0055114] oxidation-reduction process; [GO:0016491] oxidoreductase activity; [1.3.2.3] L-galactonolactone dehydrogenase.; [PF04030] D-arabinono-1,4-lactone oxidase; [PF01565] FAD binding domain29.750.6935
12 Mapoly0084s0078 [PF01926] 50S ribosome-binding GTPase; [KOG1491] Predicted GTP-binding protein (ODN superfamily); [PF06071] Protein of unknown function (DUF933); [K06942] ribosomal RNA large subunit methyltransferase N [EC:2.1.1.-]; [PTHR23305] GTP-BINDING PROTEIN-RELATED; [GO:0005525] GTP binding31.190.7924
13 Mapoly0199s0012 [GO:0016020] membrane; [PF00504] Chlorophyll A-B binding protein; [PTHR21649] CHLOROPHYLL A/B BINDING PROTEIN; [GO:0009765] photosynthesis, light harvesting; [K08913] light-harvesting complex II chlorophyll a/b binding protein 231.540.6854
14 Mapoly0024s0126 [GO:0004471] malate dehydrogenase (decarboxylating) activity; [PF00390] Malic enzyme, N-terminal domain; [GO:0055114] oxidation-reduction process; [PTHR23406] MALIC ENZYME-RELATED; [PF03949] Malic enzyme, NAD binding domain; [KOG1257] NADP+-dependent malic enzyme; [GO:0051287] NAD binding; [PTHR23406:SF2] MALIC ENZYME32.170.7376
15 Mapoly0010s0049 [3.13.1.1] UDP-sulfoquinovose synthase.; [PF01370] NAD dependent epimerase/dehydratase family; [GO:0003824] catalytic activity; [KOG1371] UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase; [K06118] UDP-sulfoquinovose synthase [EC:3.13.1.1]; [GO:0050662] coenzyme binding; [PTHR10366] NAD DEPENDENT EPIMERASE/DEHYDRATASE35.920.6655
16 Mapoly0008s0037 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [KOG1337] N-methyltransferase; [PF09273] Rubisco LSMT substrate-binding43.010.7883
17 Mapoly0030s0051 [GO:0016020] membrane; [PF01758] Sodium Bile acid symporter family; [GO:0008508] bile acid:sodium symporter activity; [GO:0006814] sodium ion transport; [K03453] bile acid:Na+ symporter, BASS family; [KOG2718] Na+-bile acid cotransporter; [PTHR10361] SODIUM-BILE ACID COTRANSPORTER44.360.7539
18 Mapoly0111s0004 [GO:0006096] glycolysis; [PF00162] Phosphoglycerate kinase; [K00927] phosphoglycerate kinase [EC:2.7.2.3]; [2.7.2.3] Phosphoglycerate kinase.; [GO:0004618] phosphoglycerate kinase activity; [KOG1367] 3-phosphoglycerate kinase; [PTHR11406] PHOSPHOGLYCERATE KINASE44.600.7752
19 Mapoly0076s0001 [PF03109] ABC1 family; [KOG1236] Predicted unusual protein kinase; [PTHR10566] CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED; [PTHR10566:SF6] BETA-LACTAMASE-RELATED49.400.7409
20 Mapoly0013s0012 [PTHR11624] DEHYDROGENASE RELATED; [K00615] transketolase [EC:2.2.1.1]; [PF00456] Transketolase, thiamine diphosphate binding domain; [GO:0008152] metabolic process; [PF02779] Transketolase, pyrimidine binding domain; [GO:0003824] catalytic activity; [PF02780] Transketolase, C-terminal domain; [2.2.1.1] Transketolase.; [KOG0523] Transketolase52.740.7666
21 Mapoly0154s0018 [PF13460] NADH(P)-binding; [KOG1203] Predicted dehydrogenase; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED53.240.7858
22 Mapoly0186s0003 [GO:0005524] ATP binding; [GO:0006426] glycyl-tRNA aminoacylation; [GO:0005737] cytoplasm; [PF02092] Glycyl-tRNA synthetase beta subunit; [PTHR30075] GLYCYL-TRNA SYNTHETASE; [GO:0000166] nucleotide binding; [PF02091] Glycyl-tRNA synthetase alpha subunit; [6.1.1.14] Glycine--tRNA ligase.; [GO:0004820] glycine-tRNA ligase activity; [K14164] glycyl-tRNA synthetase [EC:6.1.1.14]54.840.7614
23 Mapoly0001s0404 [1.8.1.7] Glutathione-disulfide reductase.; [GO:0050660] flavin adenine dinucleotide binding; [KOG0405] Pyridine nucleotide-disulphide oxidoreductase; [PTHR22912] DISULFIDE OXIDOREDUCTASE; [GO:0055114] oxidation-reduction process; [GO:0045454] cell redox homeostasis; [PF00070] Pyridine nucleotide-disulphide oxidoreductase; [GO:0016491] oxidoreductase activity; [K00383] glutathione reductase (NADPH) [EC:1.8.1.7]; [PF02852] Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; [PF07992] Pyridine nucleotide-disulphide oxidoreductase58.310.7238
24 Mapoly0213s0005 [5.3.1.6] Ribose-5-phosphate isomerase.; [GO:0009052] pentose-phosphate shunt, non-oxidative branch; [K01807] ribose 5-phosphate isomerase A [EC:5.3.1.6]; [PTHR11934] RIBOSE-5-PHOSPHATE ISOMERASE; [PTHR11934:SF1] RIBOSE 5-PHOSPHATE ISOMERASE; [KOG3075] Ribose 5-phosphate isomerase; [PF06026] Ribose 5-phosphate isomerase A (phosphoriboisomerase A); [GO:0004751] ribose-5-phosphate isomerase activity59.510.7862
25 Mapoly0139s0012 [GO:0016020] membrane; [PF00504] Chlorophyll A-B binding protein; [PTHR21649] CHLOROPHYLL A/B BINDING PROTEIN; [GO:0009765] photosynthesis, light harvesting59.630.7839
26 Mapoly0001s0043 -62.580.7527
27 Mapoly0030s0106 [GO:0031072] heat shock protein binding; [KOG0715] Molecular chaperone (DnaJ superfamily); [PF00226] DnaJ domain; [PF01556] DnaJ C terminal domain; [PTHR24076] FAMILY NOT NAMED; [PF00684] DnaJ central domain; [GO:0051082] unfolded protein binding63.380.7549
28 Mapoly0115s0028 [KOG4824] Apolipoprotein D/Lipocalin; [PTHR11430] LIPOCALIN; [PF08212] Lipocalin-like domain; [PTHR11430:SF32] PROSTAGLANDIN-H2 D-ISOMERASE (LIPOCALIN-TYPE PROSTAGLANDIN-D SYNTHASE)63.520.7807
29 Mapoly0002s0267 [KOG0448] Mitofusin 1 GTPase, involved in mitochondrila biogenesis; [PF01926] 50S ribosome-binding GTPase; [PTHR11649:SF36] PUTATIVE UNCHARACTERIZED PROTEIN; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [GO:0005525] GTP binding63.870.7218
30 Mapoly0030s0067 [PF00550] Phosphopantetheine attachment site; [PTHR20863] ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED65.670.7740
31 Mapoly0157s0018 [GO:0000287] magnesium ion binding; [GO:0005737] cytoplasm; [PTHR21403:SF1] ATP PHOSPHORIBOSYLTRANSFERASE (ATP-PRTASE); [GO:0000105] histidine biosynthetic process; [K00765] ATP phosphoribosyltransferase [EC:2.4.2.17]; [PF01634] ATP phosphoribosyltransferase; [PF08029] HisG, C-terminal domain; [GO:0003879] ATP phosphoribosyltransferase activity; [2.4.2.17] ATP phosphoribosyltransferase.; [KOG2831] ATP phosphoribosyltransferase; [PTHR21403] ATP PHOSPHORIBOSYLTRANSFERASE (ATP-PRTASE)65.730.7341
32 Mapoly0129s0002 [KOG0512] Fetal globin-inducing factor (contains ankyrin repeats); [PTHR24128] FAMILY NOT NAMED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF12796] Ankyrin repeats (3 copies); [K12271] signal recognition particle 43 kDa protein68.150.7751
33 Mapoly0004s0122 [PF07498] Rho termination factor, N-terminal domain; [GO:0006353] DNA-dependent transcription, termination69.970.7586
34 Mapoly0024s0038 [GO:0002161] aminoacyl-tRNA editing activity; [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PF08264] Anticodon-binding domain of tRNA; [6.1.1.4] Leucine--tRNA ligase.; [KOG0435] Leucyl-tRNA synthetase; [PF13603] Leucyl-tRNA synthetase, Domain 2; [PTHR11946:SF7] LEUCYL-TRNA SYNTHETASE; [GO:0004823] leucine-tRNA ligase activity; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [GO:0006429] leucyl-tRNA aminoacylation; [K01869] leucyl-tRNA synthetase [EC:6.1.1.4]; [PF09334] tRNA synthetases class I (M); [PF00133] tRNA synthetases class I (I, L, M and V); [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity72.830.7469
35 Mapoly0065s0007 [PTHR12934] 50S RIBOSOMAL PROTEIN L15; [KOG0846] Mitochondrial/chloroplast ribosomal protein L15/L10; [PF00828] Ribosomal protein L18e/L15; [GO:0003735] structural constituent of ribosome; [PTHR12934:SF2] 50S RIBOSOMAL PROTEIN L15; [GO:0015934] large ribosomal subunit; [GO:0006412] translation; [K02876] large subunit ribosomal protein L1573.860.7802
36 Mapoly0039s0053 [GO:0055114] oxidation-reduction process; [GO:0006779] porphyrin-containing compound biosynthetic process; [K00228] coproporphyrinogen III oxidase [EC:1.3.3.3]; [PF01218] Coproporphyrinogen III oxidase; [PTHR10755] COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL; [1.3.3.3] Coproporphyrinogen oxidase.; [GO:0004109] coproporphyrinogen oxidase activity; [PTHR10755:SF0] COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL; [KOG1518] Coproporphyrinogen III oxidase CPO/HEM1378.990.7737
37 Mapoly0049s0002 [GO:0055114] oxidation-reduction process; [GO:0005507] copper ion binding; [GO:0016491] oxidoreductase activity; [PF00394] Multicopper oxidase; [PTHR11709] MULTI-COPPER OXIDASE; [KOG1263] Multicopper oxidases; [PTHR11709:SF23] SUBFAMILY NOT NAMED; [PF07731] Multicopper oxidase; [PF07732] Multicopper oxidase79.110.6534
38 Mapoly0082s0040 [GO:0016020] membrane; [PF00504] Chlorophyll A-B binding protein; [K08907] light-harvesting complex I chlorophyll a/b binding protein 1; [PTHR21649] CHLOROPHYLL A/B BINDING PROTEIN; [GO:0009765] photosynthesis, light harvesting79.840.7676
39 Mapoly0104s0016 [GO:0005506] iron ion binding; [PF00042] Globin; [PTHR22924] LEGHEMOGLOBIN-RELATED; [GO:0020037] heme binding81.290.7656
40 Mapoly0086s0004 [PF10674] Protein of unknown function (DUF2488)82.270.7702
41 Mapoly0008s0217 [GO:0000287] magnesium ion binding; [PF00719] Inorganic pyrophosphatase; [3.6.1.1] Inorganic diphosphatase.; [GO:0004427] inorganic diphosphatase activity; [GO:0005737] cytoplasm; [K01507] inorganic pyrophosphatase [EC:3.6.1.1]; [GO:0006796] phosphate-containing compound metabolic process; [KOG1626] Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38; [PTHR10286] INORGANIC PYROPHOSPHATASE83.080.7429
42 Mapoly0008s0007 [PTHR30249] PUTATIVE SEROTONIN TRANSPORTER; [PTHR30249:SF0] PUTATIVE SEROTONIN TRANSPORTER; [PF04172] LrgB-like family86.010.7658
43 Mapoly0056s0110 [PF00581] Rhodanese-like domain86.160.7649
44 Mapoly0008s0189 [GO:0005840] ribosome; [GO:0003723] RNA binding; [PTHR13718] RIBOSOMAL S SUBUNIT; [K02988] small subunit ribosomal protein S5; [PF00333] Ribosomal protein S5, N-terminal domain; [GO:0003735] structural constituent of ribosome; [KOG0877] 40S ribosomal protein S2/30S ribosomal protein S5; [GO:0006412] translation; [PF03719] Ribosomal protein S5, C-terminal domain88.860.7729
45 Mapoly0013s0111 [KOG1203] Predicted dehydrogenase; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED; [PF05368] NmrA-like family90.110.7713
46 Mapoly0001s0065 [GO:0019867] outer membrane; [PF07244] Surface antigen variable number repeat; [PF01103] Surface antigen; [PTHR12815] SORTING AND ASSEMBLY MACHINERY (SAM50) PROTEIN92.370.7019
47 Mapoly0027s0106 [PTHR11177] CHITINASE92.380.7587
48 Mapoly0040s0096 [GO:0009523] photosystem II; [PTHR31407] FAMILY NOT NAMED; [GO:0019898] extrinsic to membrane; [K02717] photosystem II oxygen-evolving enhancer protein 2; [GO:0009654] oxygen evolving complex; [PF01789] PsbP; [GO:0005509] calcium ion binding; [GO:0015979] photosynthesis96.010.7727
49 Mapoly0023s0130 [GO:0003723] RNA binding; [PTHR23270] PROGRAMMED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5); [PF00575] S1 RNA binding domain96.290.7563
50 Mapoly0083s0047 [GO:0009523] photosystem II; [GO:0016021] integral to membrane; [GO:0030145] manganese ion binding; [K02723] photosystem II PsbY protein; [PF06298] Photosystem II protein Y (PsbY); [GO:0015979] photosynthesis97.980.7610
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