Guide Gene

Gene ID
Mapoly0003s0298
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0003s0298 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 0.00 1.0000
1 Mapoly0085s0042 [PF04760] Translation initiation factor IF-2, N-terminal region; [PF11987] Translation-initiation factor 2; [K02519] translation initiation factor IF-2; [PF00009] Elongation factor Tu GTP binding domain; [PTHR23115:SF41] TRANSLATION INITIATION FACTOR IF-2; [GO:0003924] GTPase activity; [KOG1145] Mitochondrial translation initiation factor 2 (IF-2; GTPase); [PTHR23115] TRANSLATION FACTOR; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 24.000.8662
2 Mapoly0055s0018 [GO:0003723] RNA binding; [K03595] GTP-binding protein Era; [PTHR11649:SF3] GTP-BINDING PROTEIN ERA; [PF01926] 50S ribosome-binding GTPase; [KOG1423] Ras-like GTPase ERA; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [PF07650] KH domain; [GO:0005525] GTP binding5.830.8728
3 Mapoly0075s0030 [GO:0005515] protein binding; [PF00043] Glutathione S-transferase, C-terminal domain; [PF13417] Glutathione S-transferase, N-terminal domain; [KOG0867] Glutathione S-transferase; [PTHR11260] GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING6.400.8067
4 Mapoly0058s0049 [PF13460] NADH(P)-binding; [KOG1203] Predicted dehydrogenase; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED7.350.8717
5 Mapoly0069s0053 [GO:0050660] flavin adenine dinucleotide binding; [K03495] glucose inhibited division protein A; [PTHR11806:SF1] GLUCOSE INHIBITED DIVISION PROTEIN A; [PTHR11806] GLUCOSE INHIBITED DIVISION PROTEIN A; [PF01134] Glucose inhibited division protein A; [KOG2311] NAD/FAD-utilizing protein possibly involved in translation; [GO:0008033] tRNA processing; [PF13932] GidA associated domain 37.420.8639
6 Mapoly0002s0267 [KOG0448] Mitofusin 1 GTPase, involved in mitochondrila biogenesis; [PF01926] 50S ribosome-binding GTPase; [PTHR11649:SF36] PUTATIVE UNCHARACTERIZED PROTEIN; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [GO:0005525] GTP binding7.550.8250
7 Mapoly0021s0030 [K07071] DNA integrity scanning protein; [PF08338] Domain of unknown function (DUF1731); [PTHR11092] SUGAR NUCLEOTIDE EPIMERASE RELATED; [PF13460] NADH(P)-binding; [KOG3019] Predicted nucleoside-diphosphate sugar epimerase; [PTHR11092:SF1] NAD DEPENDENT EPIMERASE/DEHYDRATASE9.590.8720
8 Mapoly0006s0113 [PTHR31621] FAMILY NOT NAMED; [PF05078] Protein of unknown function (DUF679)11.660.7551
9 Mapoly0101s0060 [GO:0051537] 2 iron, 2 sulfur cluster binding; [GO:0010277] chlorophyllide a oxygenase [overall] activity; [GO:0055114] oxidation-reduction process; [PF08417] Pheophorbide a oxygenase; [K13600] chlorophyllide a oxygenase [EC:1.13.12.14]; [PTHR21266] IRON-SULFUR DOMAIN CONTAINING PROTEIN; [GO:0016491] oxidoreductase activity; [PF00355] Rieske [2Fe-2S] domain; [PTHR21266:SF19] OXIDASE/CHLOROPHYLL SYNTHASE; [1.13.12.14] Transferred entry: 1.14.13.122.13.750.8329
10 Mapoly0022s0156 [PF00225] Kinesin motor domain; [GO:0005524] ATP binding; [PTHR24115] FAMILY NOT NAMED; [KOG4280] Kinesin-like protein; [GO:0005871] kinesin complex; [GO:0007018] microtubule-based movement; [GO:0008017] microtubule binding; [GO:0003777] microtubule motor activity16.430.7786
11 Mapoly0098s0053 [GO:0005524] ATP binding; [PTHR11752] HELICASE SKI2W; [KOG0947] Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF08148] DSHCT (NUC185) domain; [GO:0003676] nucleic acid binding; [GO:0016818] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides17.150.8226
12 Mapoly0186s0003 [GO:0005524] ATP binding; [GO:0006426] glycyl-tRNA aminoacylation; [GO:0005737] cytoplasm; [PF02092] Glycyl-tRNA synthetase beta subunit; [PTHR30075] GLYCYL-TRNA SYNTHETASE; [GO:0000166] nucleotide binding; [PF02091] Glycyl-tRNA synthetase alpha subunit; [6.1.1.14] Glycine--tRNA ligase.; [GO:0004820] glycine-tRNA ligase activity; [K14164] glycyl-tRNA synthetase [EC:6.1.1.14]17.550.8300
13 Mapoly3765s0001 [PF08263] Leucine rich repeat N-terminal domain; [PF12799] Leucine Rich repeats (2 copies); [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE17.610.7902
14 Mapoly0002s0171 [KOG1267] Mitochondrial transcription termination factor, mTERF; [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED23.110.8535
15 Mapoly0136s0029 [PTHR32183] FAMILY NOT NAMED23.960.8508
16 Mapoly0024s0038 [GO:0002161] aminoacyl-tRNA editing activity; [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PF08264] Anticodon-binding domain of tRNA; [6.1.1.4] Leucine--tRNA ligase.; [KOG0435] Leucyl-tRNA synthetase; [PF13603] Leucyl-tRNA synthetase, Domain 2; [PTHR11946:SF7] LEUCYL-TRNA SYNTHETASE; [GO:0004823] leucine-tRNA ligase activity; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [GO:0006429] leucyl-tRNA aminoacylation; [K01869] leucyl-tRNA synthetase [EC:6.1.1.4]; [PF09334] tRNA synthetases class I (M); [PF00133] tRNA synthetases class I (I, L, M and V); [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity27.840.8196
17 Mapoly0153s0005 [PF06485] Protein of unknown function (DUF1092)28.000.8367
18 Mapoly0118s0023 -28.460.8323
19 Mapoly0136s0003 [PF01926] 50S ribosome-binding GTPase; [PTHR11702] DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED; [GO:0000166] nucleotide binding; [PTHR11702:SF20] GTP-BINDING PROTEIN; [PF09269] Domain of unknown function (DUF1967); [PF01018] GTP1/OBG; [KOG1489] Predicted GTP-binding protein (ODN superfamily); [GO:0005525] GTP binding28.980.8298
20 Mapoly0036s0017 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PF13041] PPR repeat family; [GO:0005634] nucleus; [PTHR12683:SF10] PREDICTED PROTEIN; [PTHR12683] FAMILY NOT NAMED; [GO:0007049] cell cycle29.930.7936
21 Mapoly0051s0032 [PTHR32060] FAMILY NOT NAMED; [PF03572] Peptidase family S41; [PF00595] PDZ domain (Also known as DHR or GLGF); [GO:0008236] serine-type peptidase activity; [GO:0005515] protein binding; [GO:0006508] proteolysis31.110.7795
22 Mapoly0030s0153 [PF13460] NADH(P)-binding; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED33.990.8114
23 Mapoly0190s0016 [PTHR11178] IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED; [GO:0005506] iron ion binding; [GO:0051536] iron-sulfur cluster binding; [GO:0016226] iron-sulfur cluster assembly; [PF01106] NifU-like domain34.860.8188
24 Mapoly0005s0009 [PTHR10742:SF97] HETERODISULFIDE REDUCTASE, SUBUNIT A; [PTHR10742] AMINE OXIDASE; [PF01593] Flavin containing amine oxidoreductase; [GO:0055114] oxidation-reduction process; [GO:0016491] oxidoreductase activity; [KOG4254] Phytoene desaturase35.780.8228
25 Mapoly0336s0001 [GO:0016021] integral to membrane; [GO:0004252] serine-type endopeptidase activity; [PF01694] Rhomboid family; [KOG2289] Rhomboid family proteins; [PTHR22936] RHOMBOID-RELATED; [GO:0006508] proteolysis; [PTHR22936:SF12] gb def: Similar to membrane protein36.080.8142
26 Mapoly0103s0078 [GO:0006779] porphyrin-containing compound biosynthetic process; [PTHR21091] METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED; [KOG2872] Uroporphyrinogen decarboxylase; [PF01208] Uroporphyrinogen decarboxylase (URO-D); [GO:0004853] uroporphyrinogen decarboxylase activity36.410.8298
27 Mapoly0028s0136 [KOG0157] Cytochrome P450 CYP4/CYP19/CYP26 subfamilies; [GO:0005506] iron ion binding; [GO:0055114] oxidation-reduction process; [GO:0016705] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; [PTHR24290] FAMILY NOT NAMED; [GO:0020037] heme binding; [K09837] carotenoid epsilon-ring hydroxylase; [PF00067] Cytochrome P45036.990.8265
28 Mapoly0391s0001 [PF00264] Common central domain of tyrosinase; [PF12142] Polyphenol oxidase middle domain; [GO:0055114] oxidation-reduction process; [PTHR11474] TYROSINASE; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [GO:0004097] catechol oxidase activity; [PF12143] Protein of unknown function (DUF_B2219)38.140.7763
29 Mapoly0066s0016 [GO:0016021] integral to membrane; [PF03040] CemA family40.040.7249
30 Mapoly0109s0018 [GO:0005524] ATP binding; [6.1.1.10] Methionine--tRNA ligase.; [GO:0000166] nucleotide binding; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [PF09334] tRNA synthetases class I (M); [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [K01874] methionyl-tRNA synthetase [EC:6.1.1.10]; [KOG0436] Methionyl-tRNA synthetase41.420.8192
31 Mapoly0061s0098 [PTHR31867] FAMILY NOT NAMED; [PF03330] Rare lipoprotein A (RlpA)-like double-psi beta-barrel; [PF01357] Pollen allergen42.060.7909
32 Mapoly0025s0092 [PF10358] N-terminal C2 in EEIG1 and EHBP1 proteins; [PF01476] LysM domain42.900.7396
33 Mapoly0002s0075 [GO:0005097] Rab GTPase activator activity; [PTHR22957] TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN; [GO:0032313] regulation of Rab GTPase activity; [PTHR22957:SF24] MICROTUBULE-ASSOCIATED PROTEIN-RELATED; [PF00566] Rab-GTPase-TBC domain; [KOG1091] Ypt/Rab-specific GTPase-activating protein GYP643.370.7318
34 Mapoly0033s0170 [GO:0009058] biosynthetic process; [PF00534] Glycosyl transferases group 1; [PF08323] Starch synthase catalytic domain; [PTHR12526] GLYCOSYLTRANSFERASE43.450.7648
35 Mapoly0091s0010 [GO:0005524] ATP binding; [GO:0016021] integral to membrane; [PF00664] ABC transporter transmembrane region; [KOG0058] Peptide exporter, ABC superfamily; [GO:0016887] ATPase activity; [GO:0006810] transport; [GO:0055085] transmembrane transport; [GO:0042626] ATPase activity, coupled to transmembrane movement of substances; [PTHR24221] FAMILY NOT NAMED; [PF00005] ABC transporter43.820.8142
36 Mapoly0063s0054 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family43.990.8038
37 Mapoly0163s0012 [GO:0003723] RNA binding; [GO:0005524] ATP binding; [PF00579] tRNA synthetases class I (W and Y); [PTHR11766:SF0] SUBFAMILY NOT NAMED; [GO:0000166] nucleotide binding; [KOG2623] Tyrosyl-tRNA synthetase; [K01866] tyrosyl-tRNA synthetase [EC:6.1.1.1]; [PTHR11766] TYROSYL-TRNA SYNTHETASE; [6.1.1.1] Tyrosine--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [PF01479] S4 domain; [GO:0004831] tyrosine-tRNA ligase activity; [GO:0004812] aminoacyl-tRNA ligase activity44.270.7763
38 Mapoly0040s0099 [6.6.1.1] Magnesium chelatase.; [GO:0016851] magnesium chelatase activity; [PF01078] Magnesium chelatase, subunit ChlI; [GO:0015995] chlorophyll biosynthetic process; [K03405] magnesium chelatase subunit I [EC:6.6.1.1]; [GO:0015979] photosynthesis44.670.8287
39 Mapoly0043s0143 [PF00687] Ribosomal protein L1p/L10e family; [PTHR23105] RIBOSOMAL PROTEIN L7AE FAMILY MEMBER; [KOG1569] 50S ribosomal protein L145.060.8290
40 Mapoly0082s0064 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding45.350.8267
41 Mapoly0067s0096 [PF06421] GTP-binding protein LepA C-terminus; [PF00009] Elongation factor Tu GTP binding domain; [PF00679] Elongation factor G C-terminus; [K03596] GTP-binding protein LepA; [GO:0003924] GTPase activity; [PTHR23115] TRANSLATION FACTOR; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 2; [KOG0462] Elongation factor-type GTP-binding protein46.130.8275
42 Mapoly0040s0139 [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [PF10458] Valyl tRNA synthetase tRNA binding arm; [PF08264] Anticodon-binding domain of tRNA; [KOG0432] Valyl-tRNA synthetase; [6.1.1.9] Valine--tRNA ligase.; [GO:0004832] valine-tRNA ligase activity; [GO:0006438] valyl-tRNA aminoacylation; [K01873] valyl-tRNA synthetase [EC:6.1.1.9]; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [PF00133] tRNA synthetases class I (I, L, M and V); [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity46.900.8069
43 Mapoly0083s0012 -48.270.7240
44 Mapoly0065s0083 [GO:0005524] ATP binding; [KOG2355] Predicted ABC-type transport, ATPase component/CCR4 associated factor; [PTHR24220] FAMILY NOT NAMED; [PTHR24220:SF85] FE(3+) IONS IMPORT ATP-BINDING PROTEIN FBPC; [GO:0016887] ATPase activity; [K09013] Fe-S cluster assembly ATP-binding protein; [PF00005] ABC transporter48.500.8013
45 Mapoly0073s0050 -51.220.6956
46 Mapoly0007s0136 [GO:0005737] cytoplasm; [PTHR11476] HISTIDYL-TRNA SYNTHETASE; [PF13393] Histidyl-tRNA synthetase52.650.8054
47 Mapoly0041s0034 [PF03725] 3' exoribonuclease family, domain 2; [GO:0003723] RNA binding; [K00962] polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]; [KOG1067] Predicted RNA-binding polyribonucleotide nucleotidyltransferase; [PF00575] S1 RNA binding domain; [2.7.7.8] Polyribonucleotide nucleotidyltransferase.; [GO:0004654] polyribonucleotide nucleotidyltransferase activity; [PF00013] KH domain; [PTHR11252:SF1] POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; [GO:0006402] mRNA catabolic process; [PF01138] 3' exoribonuclease family, domain 1; [PTHR11252] POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE53.030.8108
48 Mapoly0047s0104 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family53.830.8024
49 Mapoly0031s0123 [PF13812] Pentatricopeptide repeat domain; [PTHR31407] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF02037] SAP domain54.390.7984
50 Mapoly0124s0017 [PTHR31053] FAMILY NOT NAMED; [GO:0055114] oxidation-reduction process; [PF02915] Rubrerythrin; [GO:0016491] oxidoreductase activity; [K04035] magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81]; [1.14.13.81] Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase.; [GO:0046872] metal ion binding54.500.8025
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