Guide Gene
- Gene ID
- Mapoly0025s0135
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [KOG1919] RNA pseudouridylate synthases; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase; [PTHR10436:SF53] SUBFAMILY NOT NAMED
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0025s0135 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [KOG1919] RNA pseudouridylate synthases; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase; [PTHR10436:SF53] SUBFAMILY NOT NAMED 0.00 1.0000 1 Mapoly0010s0199 [GO:0005737] cytoplasm; [PTHR11933] TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE; [PF03054] tRNA methyl transferase; [GO:0008033] tRNA processing; [GO:0016740] transferase activity; [2.8.1.-] Sulfurtransferases.; [K00566] tRNA-specific 2-thiouridylase [EC:2.8.1.-]; [KOG2805] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1.73 0.8859 2 Mapoly0090s0080 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 2.45 0.8810 3 Mapoly0064s0016 [GO:0003723] RNA binding; [PF01985] CRS1 / YhbY (CRM) domain; [PTHR31846] FAMILY NOT NAMED 4.58 0.8540 4 Mapoly0095s0070 [PTHR16301] IMPACT-RELATED; [PF05773] RWD domain; [GO:0005515] protein binding; [PF01205] Uncharacterized protein family UPF0029; [PTHR16301:SF2] gb def: SPBC14C8.09c protein 4.80 0.8327 5 Mapoly0117s0021 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 8.37 0.8832 6 Mapoly0031s0152 [PF01545] Cation efflux family; [KOG1484] Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily); [GO:0016021] integral to membrane; [GO:0055085] transmembrane transport; [GO:0006812] cation transport; [GO:0008324] cation transmembrane transporter activity; [PTHR11562] CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 9.38 0.8536 7 Mapoly0019s0108 [PF02033] Ribosome-binding factor A; [GO:0006364] rRNA processing 10.68 0.8617 8 Mapoly0001s0567 [K01410] mitochondrial intermediate peptidase [EC:3.4.24.59]; [PTHR11804] PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED; [PTHR11804:SF5] MITOCHONDRIAL INTERMEDIATE PEPTIDASE; [GO:0004222] metalloendopeptidase activity; [3.4.24.59] Mitochondrial intermediate peptidase.; [PF01432] Peptidase family M3; [GO:0006508] proteolysis; [KOG2090] Metalloendopeptidase family - mitochondrial intermediate peptidase 12.41 0.8469 9 Mapoly0164s0014 [KOG0341] DEAD-box protein abstrakt; [GO:0005524] ATP binding; [K13116] ATP-dependent RNA helicase DDX41 [EC:3.6.4.13]; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PTHR24031:SF20] SUBFAMILY NOT NAMED 12.65 0.8695 10 Mapoly0039s0104 [GO:0006396] RNA processing; [3.1.26.5] Ribonuclease P.; [GO:0004526] ribonuclease P activity; [PF06978] Ribonucleases P/MRP protein subunit POP1; [K01164] ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]; [GO:0001682] tRNA 5'-leader removal; [PTHR22731] RIBONUCLEASE P/MRP SUBUNIT; [PF08170] POPLD (NUC188) domain 14.00 0.8724 11 Mapoly0019s0086 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 16.97 0.7663 12 Mapoly0084s0050 [PTHR10751] GUANYLATE BINDING PROTEIN; [PF02263] Guanylate-binding protein, N-terminal domain; [GO:0003924] GTPase activity; [GO:0005525] GTP binding 18.00 0.8516 13 Mapoly0002s0048 [KOG2374] Uncharacterized conserved protein; [PF09740] Uncharacterized conserved protein (DUF2043) 19.75 0.8476 14 Mapoly0001s0533 [KOG1267] Mitochondrial transcription termination factor, mTERF; [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED 21.63 0.8467 15 Mapoly0112s0009 [PF13513] HEAT-like repeat; [PF00514] Armadillo/beta-catenin-like repeat; [GO:0005515] protein binding; [PTHR23315] BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING 22.14 0.7873 16 Mapoly0078s0043 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 23.37 0.8318 17 Mapoly0097s0077 [PTHR12888:SF0] SUBFAMILY NOT NAMED; [K13345] peroxin-12; [GO:0008270] zinc ion binding; [GO:0006625] protein targeting to peroxisome; [PF04757] Pex2 / Pex12 amino terminal region; [PF13923] Zinc finger, C3HC4 type (RING finger); [PTHR12888] PEROXISOME ASSEMBLY PROTEIN 12 (PEROXIN-12); [GO:0005779] integral to peroxisomal membrane; [GO:0008022] protein C-terminus binding; [KOG0826] Predicted E3 ubiquitin ligase involved in peroxisome organization 24.39 0.8405 18 Mapoly0163s0003 [PTHR32133] FAMILY NOT NAMED 24.39 0.7926 19 Mapoly0020s0117 [PF13516] Leucine Rich repeat; [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN; [KOG1947] Leucine rich repeat proteins, some proteins contain F-box 28.72 0.8322 20 Mapoly0102s0030 [GO:0004014] adenosylmethionine decarboxylase activity; [PTHR11570] S-ADENOSYLMETHIONINE DECARBOXYLASE; [PTHR11570:SF0] SUBFAMILY NOT NAMED; [PF01536] Adenosylmethionine decarboxylase; [GO:0006597] spermine biosynthetic process; [GO:0008295] spermidine biosynthetic process; [KOG0788] S-adenosylmethionine decarboxylase 29.09 0.6898 21 Mapoly0071s0110 [GO:0042393] histone binding; [PF02182] SAD/SRA domain; [PTHR14140] E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 29.39 0.8400 22 Mapoly0088s0065 [PF12756] C2H2 type zinc-finger (2 copies); [PF12171] Zinc-finger double-stranded RNA-binding; [KOG0717] Molecular chaperone (DnaJ superfamily); [PF00226] DnaJ domain; [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER; [K09506] DnaJ homolog subfamily A member 5 29.46 0.8418 23 Mapoly0128s0010 [PTHR12749:SF0] SUBFAMILY NOT NAMED; [PTHR12749] EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1; [PF14520] Helix-hairpin-helix domain; [PF03834] Binding domain of DNA repair protein Ercc1 (rad10/Swi10); [GO:0005634] nucleus; [GO:0006281] DNA repair; [GO:0003684] damaged DNA binding; [K10849] DNA excision repair protein ERCC-1; [KOG2841] Structure-specific endonuclease ERCC1-XPF, ERCC1 component; [GO:0004519] endonuclease activity 29.50 0.8280 24 Mapoly0007s0121 [PTHR21027] TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54; [PF12928] tRNA-splicing endonuclease subunit sen54 N-term 32.40 0.8351 25 Mapoly0044s0018 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [KOG0926] DEAH-box RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold 33.09 0.8412 26 Mapoly0133s0003 [GO:0005524] ATP binding; [PTHR24031:SF91] SUBFAMILY NOT NAMED; [KOG0347] RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding 34.01 0.8465 27 Mapoly0138s0041 [PTHR30602] AMINO-ACID ACETYLTRANSFERASE; [2.3.1.1] Amino-acid N-acetyltransferase.; [K14682] amino-acid N-acetyltransferase [EC:2.3.1.1]; [GO:0008080] N-acetyltransferase activity; [PF00583] Acetyltransferase (GNAT) family; [PF00696] Amino acid kinase family; [KOG2436] Acetylglutamate kinase/acetylglutamate synthase 34.04 0.8363 28 Mapoly0011s0200 [PF00472] RF-1 domain; [GO:0005737] cytoplasm; [K02836] peptide chain release factor RF-2; [PTHR11075] PEPTIDE CHAIN RELEASE FACTOR; [PTHR11075:SF6] PEPTIDE CHAIN RELEASE FACTOR 2; [PF03462] PCRF domain; [GO:0006415] translational termination; [KOG2726] Mitochondrial polypeptide chain release factor; [GO:0016149] translation release factor activity, codon specific; [GO:0003747] translation release factor activity 34.29 0.8301 29 Mapoly0027s0145 [PF01902] ATP-binding region; [KOG2316] Predicted ATPase (PP-loop superfamily); [PTHR12196] DOMAIN OF UNKNOWN FUNCTION 71 (DUF71)-CONTAINING PROTEIN; [PF01042] Endoribonuclease L-PSP 36.06 0.8045 30 Mapoly0189s0001 [GO:0008168] methyltransferase activity; [PF08241] Methyltransferase domain; [GO:0008152] metabolic process; [PTHR13069] UNCHARACTERIZED; [KOG1331] Predicted methyltransferase; [PF13532] 2OG-Fe(II) oxygenase superfamily 36.12 0.7906 31 Mapoly0061s0123 [GO:0005515] protein binding; [PTHR19846] WD40 REPEAT PROTEIN; [KOG0272] U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats); [K12662] U4/U6 small nuclear ribonucleoprotein PRP4; [PF00400] WD domain, G-beta repeat; [PF08799] pre-mRNA processing factor 4 (PRP4) like 36.44 0.8406 32 Mapoly0043s0079 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 36.63 0.8337 33 Mapoly0074s0045 [PTHR23329] TUFTELIN-INTERACTING PROTEIN 11-RELATED; [PF01585] G-patch domain; [GO:0003676] nucleic acid binding; [PF01424] R3H domain 36.93 0.8052 34 Mapoly0007s0115 [KOG0959] N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily; [PTHR11851] METALLOPROTEASE; [PF05193] Peptidase M16 inactive domain; [PF00675] Insulinase (Peptidase family M16) 37.68 0.8360 35 Mapoly0065s0064 [PTHR32463] FAMILY NOT NAMED; [GO:0005524] ATP binding; [K05305] fucokinase [EC:2.7.1.52]; [PF08544] GHMP kinases C terminal; [PF00288] GHMP kinases N terminal domain; [PTHR32463:SF0] SUBFAMILY NOT NAMED; [2.7.1.52] Fucokinase.; [PF07959] L-fucokinase; [GO:0016772] transferase activity, transferring phosphorus-containing groups 39.42 0.7986 36 Mapoly0141s0031 - 39.47 0.7933 37 Mapoly0067s0010 [KOG1164] Casein kinase (serine/threonine/tyrosine protein kinase) 39.55 0.8256 38 Mapoly0036s0109 [PTHR12360] NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1); [KOG1952] Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains; [PTHR12360:SF0] TRANSCRIPTIONAL REPRESSOR NF-X1; [GO:0003676] nucleic acid binding; [PF01424] R3H domain 40.53 0.8280 39 Mapoly0025s0052 [PTHR12984] SCY1-RELATED S/T PROTEIN KINASE-LIKE; [GO:0005524] ATP binding; [PTHR12984:SF3] SCY1(YEAST) PROTEIN KINASE-LIKE; [PF00069] Protein kinase domain; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [KOG4693] Uncharacterized conserved protein, contains kelch repeat; [PF01344] Kelch motif; [GO:0006468] protein phosphorylation; [PF00646] F-box domain 40.95 0.8200 40 Mapoly0031s0113 [PTHR20854] INOSITOL MONOPHOSPHATASE; [GO:0046854] phosphatidylinositol phosphorylation; [3.1.3.7] 3'(2'),5'-bisphosphate nucleotidase.; [KOG1528] Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1; [PF00459] Inositol monophosphatase family; [K01082] 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] 41.86 0.7988 41 Mapoly0015s0012 [PTHR22093] LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 1 42.36 0.8150 42 Mapoly0022s0109 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0006352] DNA-dependent transcription, initiation; [PTHR11618] TRANSCRIPTION INITIATION FACTOR IIB-RELATED; [GO:0008270] zinc ion binding; [KOG1597] Transcription initiation factor TFIIB 42.43 0.7988 43 Mapoly0166s0012 [KOG2551] Phospholipase/carboxyhydrolase; [PTHR18838] RHODANESE-LIKE DOMAIN-CONTAINING; [PF03959] Serine hydrolase (FSH1); [PTHR18838:SF19] UNCHARACTERIZED 42.45 0.8123 44 Mapoly0035s0052 [KOG2303] Predicted NAD synthase, contains CN hydrolase domain; [GO:0006807] nitrogen compound metabolic process; [PTHR23090] NH(3)/GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE; [PF00795] Carbon-nitrogen hydrolase; [K01950] NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]; [GO:0016810] hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; [PF02540] NAD synthase; [6.3.5.1] NAD(+) synthase (glutamine-hydrolyzing). 44.88 0.7828 45 Mapoly0015s0194 [PTHR12747] IKAPPAB KINASE COMPLEX-ASSOCIATED PROTEIN; [KOG1920] IkappaB kinase complex, IKAP component; [K11373] elongator complex protein 1; [PF04762] IKI3 family 45.69 0.8323 46 Mapoly0001s0524 [K13146] integrator complex subunit 9; [PTHR11203:SF2] INTEGRATOR COMPLEX SUBUNIT 9; [PTHR11203] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; [GO:0016180] snRNA processing; [PF10996] Beta-Casp domain; [KOG1138] Predicted cleavage and polyadenylation specificity factor (CPSF subunit); [GO:0032039] integrator complex 46.37 0.8132 47 Mapoly0002s0128 [GO:0016020] membrane; [PF00344] SecY translocase; [GO:0015031] protein transport; [PTHR10906] SECY/SEC61-ALPHA FAMILY MEMBER 46.37 0.8157 48 Mapoly0165s0023 [GO:0034227] tRNA thio-modification; [PF10288] Protein of unknown function (DUF2392); [GO:0002098] tRNA wobble uridine modification; [KOG2594] Uncharacterized conserved protein; [K14169] cytoplasmic tRNA 2-thiolation protein 2; [GO:0000049] tRNA binding; [PTHR20882] FAMILY NOT NAMED 48.35 0.7550 49 Mapoly0041s0109 [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 48.47 0.8315 50 Mapoly0140s0016 [GO:0005524] ATP binding; [KOG0061] Transporter, ABC superfamily (Breast cancer resistance protein); [GO:0016887] ATPase activity; [PTHR19241] ATP-BINDING CASSETTE TRANSPORTER; [PF00005] ABC transporter 48.99 0.8083