Guide Gene

Gene ID
Mapoly0022s0109
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0006355] regulation of transcription, DNA-dependent; [GO:0006352] DNA-dependent transcription, initiation; [PTHR11618] TRANSCRIPTION INITIATION FACTOR IIB-RELATED; [GO:0008270] zinc ion binding; [KOG1597] Transcription initiation factor TFIIB

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0022s0109 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0006352] DNA-dependent transcription, initiation; [PTHR11618] TRANSCRIPTION INITIATION FACTOR IIB-RELATED; [GO:0008270] zinc ion binding; [KOG1597] Transcription initiation factor TFIIB 0.00 1.0000
1 Mapoly0052s0044 [KOG0953] Mitochondrial RNA helicase SUV3, DEAD-box superfamily; [PF12513] Mitochondrial degradasome RNA helicase subunit C terminal; [GO:0016817] hydrolase activity, acting on acid anhydrides; [PTHR12131] ATP-DEPENDENT RNA AND DNA HELICASE; [PF00271] Helicase conserved C-terminal domain; [PTHR12131:SF1] ATP-DEPENDENT DNA HELICASE MGPS4.470.8614
2 Mapoly0070s0087 -5.000.8488
3 Mapoly0031s0152 [PF01545] Cation efflux family; [KOG1484] Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily); [GO:0016021] integral to membrane; [GO:0055085] transmembrane transport; [GO:0006812] cation transport; [GO:0008324] cation transmembrane transporter activity; [PTHR11562] CATION EFFLUX PROTEIN/ ZINC TRANSPORTER5.480.8565
4 Mapoly0065s0064 [PTHR32463] FAMILY NOT NAMED; [GO:0005524] ATP binding; [K05305] fucokinase [EC:2.7.1.52]; [PF08544] GHMP kinases C terminal; [PF00288] GHMP kinases N terminal domain; [PTHR32463:SF0] SUBFAMILY NOT NAMED; [2.7.1.52] Fucokinase.; [PF07959] L-fucokinase; [GO:0016772] transferase activity, transferring phosphorus-containing groups6.930.8303
5 Mapoly0167s0022 [PTHR15954] UNCHARACTERIZED; [PF08700] Vps51/Vps67; [PTHR15954:SF4] SUBFAMILY NOT NAMED6.930.8556
6 Mapoly0002s0048 [KOG2374] Uncharacterized conserved protein; [PF09740] Uncharacterized conserved protein (DUF2043)7.210.8576
7 Mapoly0052s0038 [KOG2280] Vacuolar assembly/sorting protein VPS16; [GO:0005737] cytoplasm; [PF04840] Vps16, C-terminal region; [PTHR12811] VACUOLAR PROTEIN SORTING VPS16; [PF04841] Vps16, N-terminal region; [GO:0006886] intracellular protein transport; [PTHR12811:SF0] SUBFAMILY NOT NAMED10.250.8163
8 Mapoly0045s0043 -12.650.8428
9 Mapoly0010s0199 [GO:0005737] cytoplasm; [PTHR11933] TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE; [PF03054] tRNA methyl transferase; [GO:0008033] tRNA processing; [GO:0016740] transferase activity; [2.8.1.-] Sulfurtransferases.; [K00566] tRNA-specific 2-thiouridylase [EC:2.8.1.-]; [KOG2805] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase15.870.8420
10 Mapoly0001s0567 [K01410] mitochondrial intermediate peptidase [EC:3.4.24.59]; [PTHR11804] PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED; [PTHR11804:SF5] MITOCHONDRIAL INTERMEDIATE PEPTIDASE; [GO:0004222] metalloendopeptidase activity; [3.4.24.59] Mitochondrial intermediate peptidase.; [PF01432] Peptidase family M3; [GO:0006508] proteolysis; [KOG2090] Metalloendopeptidase family - mitochondrial intermediate peptidase15.910.8358
11 Mapoly0087s0038 [PF04124] Dor1-like family; [PTHR21311] CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8; [GO:0017119] Golgi transport complex; [PTHR21311:SF0] SUBFAMILY NOT NAMED; [KOG2069] Golgi transport complex subunit16.280.7791
12 Mapoly0084s0050 [PTHR10751] GUANYLATE BINDING PROTEIN; [PF02263] Guanylate-binding protein, N-terminal domain; [GO:0003924] GTPase activity; [GO:0005525] GTP binding17.550.8449
13 Mapoly0088s0081 [K07976] Rab family, other; [KOG0097] GTPase Rab14, small G protein superfamily; [GO:0007264] small GTPase mediated signal transduction; [PTHR24073] FAMILY NOT NAMED; [PTHR24073:SF128] SUBFAMILY NOT NAMED; [PF00071] Ras family; [GO:0005525] GTP binding19.340.8115
14 Mapoly0008s0195 [PTHR13304] GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN; [PF04114] Gaa1-like, GPI transamidase component; [GO:0016021] integral to membrane; [PTHR13304:SF0] SUBFAMILY NOT NAMED; [GO:0042765] GPI-anchor transamidase complex; [K05289] glycosylphosphatidylinositol transamidase; [KOG3566] Glycosylphosphatidylinositol anchor attachment protein GAA120.490.8181
15 Mapoly0061s0123 [GO:0005515] protein binding; [PTHR19846] WD40 REPEAT PROTEIN; [KOG0272] U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats); [K12662] U4/U6 small nuclear ribonucleoprotein PRP4; [PF00400] WD domain, G-beta repeat; [PF08799] pre-mRNA processing factor 4 (PRP4) like20.490.8471
16 Mapoly0061s0114 -21.560.7382
17 Mapoly0043s0079 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family21.910.8404
18 Mapoly0035s0138 [PTHR10555] SORTING NEXIN; [PF00787] PX domain; [KOG1003] Actin filament-coating protein tropomyosin; [GO:0035091] phosphatidylinositol binding23.070.8093
19 Mapoly0097s0060 [PTHR13890:SF2] MITOCHONDRIAL RNA SPLICING PROTEIN MRS2-RELATED; [KOG2662] Magnesium transporters: CorA family; [GO:0015095] magnesium ion transmembrane transporter activity; [GO:0015693] magnesium ion transport; [PTHR13890] RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL24.290.7500
20 Mapoly0059s0091 [PF03901] Alg9-like mannosyltransferase family; [KOG2515] Mannosyltransferase; [PTHR22760] GLYCOSYLTRANSFERASE; [GO:0016757] transferase activity, transferring glycosyl groups; [K03846] alpha-1,2-mannosyltransferase [EC:2.4.1.-]; [2.4.1.-] Hexosyltransferases.26.150.7148
21 Mapoly0004s0184 [GO:0005515] protein binding; [PF00856] SET domain; [K07117] uncharacterized protein; [PTHR12197] SET AND MYND DOMAIN CONTAINING26.830.8073
22 Mapoly0122s0006 [PTHR13134:SF3] UNCHARACTERIZED; [PF06159] Protein of unknown function (DUF974); [KOG2625] Uncharacterized conserved protein; [PTHR13134] UNCHARACTERIZED26.940.7721
23 Mapoly0095s0070 [PTHR16301] IMPACT-RELATED; [PF05773] RWD domain; [GO:0005515] protein binding; [PF01205] Uncharacterized protein family UPF0029; [PTHR16301:SF2] gb def: SPBC14C8.09c protein27.060.7751
24 Mapoly0007s0274 [PTHR21443] CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7; [KOG4182] Uncharacterized conserved protein; [GO:0006886] intracellular protein transport; [PF10191] Golgi complex component 7 (COG7); [GO:0017119] Golgi transport complex27.500.7529
25 Mapoly0024s0139 [PTHR13391] TUBULIN-RELATED PROTEIN; [PF14881] Tubulin domain; [PF10644] Misato Segment II tubulin-like domain; [KOG2530] Members of tubulin/FtsZ family30.810.8265
26 Mapoly0173s0024 [PTHR15157] FAMILY NOT NAMED; [PTHR15157:SF5] SUBFAMILY NOT NAMED; [PF10186] UV radiation resistance protein and autophagy-related subunit 14; [GO:0010508] positive regulation of autophagy33.050.7876
27 Mapoly0002s0046 [PF07986] Tubulin binding cofactor C; [KOG2512] Beta-tubulin folding cofactor C; [PTHR15139] TUBULIN FOLDING COFACTOR C; [GO:0007023] post-chaperonin tubulin folding pathway35.330.7900
28 Mapoly0015s0117 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [KOG0764] Mitochondrial FAD carrier protein; [PTHR24089:SF62] SUBFAMILY NOT NAMED35.570.8019
29 Mapoly0005s0057 [GO:0016787] hydrolase activity; [KOG1386] Nucleoside phosphatase; [PTHR11782] ADENOSINE/GUANOSINE DIPHOSPHATASE; [K01510] apyrase [EC:3.6.1.5]; [3.6.1.5] Apyrase.; [PF01150] GDA1/CD39 (nucleoside phosphatase) family36.520.7843
30 Mapoly0015s0088 [PF10250] GDP-fucose protein O-fucosyltransferase; [PTHR31288] FAMILY NOT NAMED38.410.7756
31 Mapoly0035s0069 [PTHR13520:SF1] SUBFAMILY NOT NAMED; [PF04437] RINT-1 / TIP-1 family; [KOG2218] ER to golgi transport protein/RAD50-interacting protein 1; [PTHR13520] RAD50-INTERACTING PROTEIN 1 (PROTEIN RINT-1)39.420.7883
32 Mapoly0151s0009 [PTHR23079] RNA-DEPENDENT RNA POLYMERASE; [GO:0003968] RNA-directed RNA polymerase activity; [KOG0988] RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference; [PF05183] RNA dependent RNA polymerase; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)39.520.7703
33 Mapoly0001s0235 [PF03407] Nucleotide-diphospho-sugar transferase39.800.7828
34 Mapoly0016s0061 [KOG1605] TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation); [PF03031] NLI interacting factor-like phosphatase; [GO:0005744] mitochondrial inner membrane presequence translocase complex; [GO:0005515] protein binding; [GO:0015031] protein transport; [PTHR12210:SF3] TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 50-RELATED; [PTHR12210] NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED; [GO:0005743] mitochondrial inner membrane40.120.7886
35 Mapoly0025s0135 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [KOG1919] RNA pseudouridylate synthases; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase; [PTHR10436:SF53] SUBFAMILY NOT NAMED42.430.7988
36 Mapoly0064s0016 [GO:0003723] RNA binding; [PF01985] CRS1 / YhbY (CRM) domain; [PTHR31846] FAMILY NOT NAMED43.160.7922
37 Mapoly0008s0085 [GO:0016021] integral to membrane; [PF03124] EXS family; [PTHR10783] XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED; [PTHR10783:SF9] EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN44.000.7851
38 Mapoly0010s0084 [KOG0367] Protein geranylgeranyltransferase Type I, beta subunit; [K11713] geranylgeranyl transferase type-1 subunit beta [EC:2.5.1.59]; [PTHR11774:SF4] GERANYLGERANYL TRANSFERASE TYPE I BETA SUBUNIT; [PF13249] Prenyltransferase-like; [2.5.1.59] Protein geranylgeranyltransferase type I.; [PTHR11774] GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT; [GO:0003824] catalytic activity; [PF00432] Prenyltransferase and squalene oxidase repeat44.770.6857
39 Mapoly0014s0172 -45.600.7252
40 Mapoly0095s0004 [PTHR10774] EXTENDED SYNAPTOTAGMIN-RELATED; [PF00168] C2 domain; [GO:0005515] protein binding46.310.7351
41 Mapoly0050s0061 [GO:0016020] membrane; [GO:0005245] voltage-gated calcium channel activity; [PTHR10037] VOLTAGE-GATED CATION CHANNEL (CALCIUM AND SODIUM); [PF00520] Ion transport protein; [GO:0055085] transmembrane transport; [GO:0006811] ion transport; [PTHR10037:SF92] SODIUM CHANNEL PROTEIN TYPE III ALPHA SUBUNIT-RELATED; [GO:0005216] ion channel activity47.750.7398
42 Mapoly0113s0021 [KOG1333] Uncharacterized conserved protein; [PTHR13083] UNCHARACTERIZED; [GO:0005515] protein binding; [PF00400] WD domain, G-beta repeat48.170.7872
43 Mapoly0001s0303 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [PF00433] Protein kinase C terminal domain; [KOG0605] NDR and related serine/threonine kinases; [GO:0006468] protein phosphorylation; [PTHR24358] SERINE/THREONINE-PROTEIN KINASE 38; [GO:0004674] protein serine/threonine kinase activity48.210.7344
44 Mapoly0007s0129 [GO:0005515] protein binding; [PF00646] F-box domain48.330.8156
45 Mapoly0122s0055 [GO:0031625] ubiquitin protein ligase binding; [PTHR11932:SF5] ANAPHASE-PROMOTING COMPLEX SUBUNIT 2; [GO:0031461] cullin-RING ubiquitin ligase complex; [GO:0006511] ubiquitin-dependent protein catabolic process; [K03349] anaphase-promoting complex subunit 2; [KOG2165] Anaphase-promoting complex (APC), subunit 2; [PTHR11932] CULLIN; [PF00888] Cullin family; [PF08672] Anaphase promoting complex (APC) subunit 248.500.8069
46 Mapoly0067s0022 [PTHR12746] NONSENSE-MEDIATED MRNA DECAY PROTEIN 3; [KOG2613] NMD protein affecting ribosome stability and mRNA decay; [PTHR12746:SF2] gb def: Hypothetical protein; [K07562] nonsense-mediated mRNA decay protein 3; [PF04981] NMD3 family50.950.8068
47 Mapoly0078s0043 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family52.650.7895
48 Mapoly0020s0110 [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family52.990.7793
49 Mapoly0056s0054 [GO:0006506] GPI anchor biosynthetic process; [GO:0009058] biosynthetic process; [PF00534] Glycosyl transferases group 1; [K03857] phosphatidylinositol glycan, class A [EC:2.4.1.198]; [PTHR12526] GLYCOSYLTRANSFERASE; [KOG1111] N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase; [2.4.1.198] Phosphatidylinositol N-acetylglucosaminyltransferase.; [PF08288] PIGA (GPI anchor biosynthesis)53.120.7889
50 Mapoly0043s0013 [KOG0143] Iron/ascorbate family oxidoreductases; [GO:0055114] oxidation-reduction process; [PF14226] non-haem dioxygenase in morphine synthesis N-terminal; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PTHR10209] OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN; [GO:0016491] oxidoreductase activity; [PF03171] 2OG-Fe(II) oxygenase superfamily54.440.7644
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