Guide Gene

Gene ID
Mapoly0024s0015
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0005524] ATP binding; [K03655] ATP-dependent DNA helicase RecG [EC:3.6.4.12]; [3.6.4.12] DNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [KOG0344] ATP-dependent RNA helicase; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PTHR24031:SF50] SUBFAMILY NOT NAMED

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0024s0015 [GO:0005524] ATP binding; [K03655] ATP-dependent DNA helicase RecG [EC:3.6.4.12]; [3.6.4.12] DNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [KOG0344] ATP-dependent RNA helicase; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PTHR24031:SF50] SUBFAMILY NOT NAMED 0.00 1.0000
1 Mapoly0032s0093 [PF02096] 60Kd inner membrane protein; [KOG1239] Inner membrane protein translocase involved in respiratory chain assembly; [K03217] preprotein translocase subunit YidC; [GO:0016021] integral to membrane; [PTHR12428] OXA1; [GO:0051205] protein insertion into membrane3.160.7486
2 Mapoly0027s0149 [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031:SF2] SUBFAMILY NOT NAMED; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF13959] Domain of unknown function (DUF4217); [KOG0345] ATP-dependent RNA helicase13.300.7321
3 Mapoly0012s0208 [K13510] lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase [EC:2.3.1.23 2.3.1.67]; [PF13405] EF-hand domain; [2.3.1.67] 1-alkylglycerophosphocholine O-acetyltransferase.; [PTHR23063] ACETYLTRANSFERASE-RELATED; [PF01553] Acyltransferase; [GO:0016746] transferase activity, transferring acyl groups; [GO:0008152] metabolic process; [PF13499] EF-hand domain pair; [KOG4666] Predicted phosphate acyltransferase, contains PlsC domain; [GO:0005509] calcium ion binding; [2.3.1.23] 1-acylglycerophosphocholine O-acyltransferase.15.490.7087
4 Mapoly0207s0010 -19.900.7153
5 Mapoly0014s0084 -20.150.7044
6 Mapoly0031s0174 [GO:0008168] methyltransferase activity; [GO:0005507] copper ion binding; [PTHR21320] CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATED; [GO:0006412] translation; [PF09243] Mitochondrial small ribosomal subunit Rsm2222.410.7329
7 Mapoly0141s0005 [GO:0031072] heat shock protein binding; [KOG0715] Molecular chaperone (DnaJ superfamily); [PF00226] DnaJ domain; [PF01556] DnaJ C terminal domain; [PTHR24076] FAMILY NOT NAMED; [PF00684] DnaJ central domain; [GO:0051082] unfolded protein binding33.940.6530
8 Mapoly0003s0246 [GO:0006396] RNA processing; [PF03725] 3' exoribonuclease family, domain 2; [GO:0003723] RNA binding; [K00962] polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]; [PTHR11252:SF0] SUBFAMILY NOT NAMED; [KOG1067] Predicted RNA-binding polyribonucleotide nucleotidyltransferase; [GO:0000175] 3'-5'-exoribonuclease activity; [PF00575] S1 RNA binding domain; [2.7.7.8] Polyribonucleotide nucleotidyltransferase.; [GO:0004654] polyribonucleotide nucleotidyltransferase activity; [PF00013] KH domain; [GO:0006402] mRNA catabolic process; [PF01138] 3' exoribonuclease family, domain 1; [PTHR11252] POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; [PF03726] Polyribonucleotide nucleotidyltransferase, RNA binding domain34.530.7249
9 Mapoly0004s0135 [PF06421] GTP-binding protein LepA C-terminus; [PF00009] Elongation factor Tu GTP binding domain; [PF00679] Elongation factor G C-terminus; [GO:0003924] GTPase activity; [PTHR23115] TRANSLATION FACTOR; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 2; [KOG0462] Elongation factor-type GTP-binding protein34.860.7236
10 Mapoly0002s0320 [PF13620] Carboxypeptidase regulatory-like domain; [PTHR23303] CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING; [KOG1948] Metalloproteinase-related collagenase pM535.410.6866
11 Mapoly0043s0003 [KOG0776] Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase; [PTHR12001] GERANYLGERANYL PYROPHOSPHATE SYNTHASE; [2.5.1.1] Dimethylallyltranstransferase.; [GO:0008299] isoprenoid biosynthetic process; [PF00348] Polyprenyl synthetase; [K14066] geranyl diphosphate synthase [EC:2.5.1.1]39.990.6660
12 Mapoly0015s0076 [PF07719] Tetratricopeptide repeat; [PF13374] Tetratricopeptide repeat; [PF13424] Tetratricopeptide repeat; [PTHR19959] KINESIN LIGHT CHAIN43.050.6971
13 Mapoly0007s0198 [GO:0003677] DNA binding; [GO:0006351] transcription, DNA-dependent; [PTHR10102:SF1] DNA-DIRECTED RNA POLYMERASE; [PTHR10102] DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL; [GO:0003899] DNA-directed RNA polymerase activity; [PF14700] DNA-directed RNA polymerase N-terminal; [2.7.7.6] DNA-directed RNA polymerase.; [PF00940] DNA-dependent RNA polymerase; [K10908] DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6]; [KOG1038] Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation46.390.7145
14 Mapoly0001s0190 [PTHR25040] FAMILY NOT NAMED; [PF00226] DnaJ domain47.170.6843
15 Mapoly0001s0045 [GO:0072546] ER membrane protein complex; [PTHR21573:SF0] SUBFAMILY NOT NAMED; [PF13360] PQQ-like domain; [KOG2103] Uncharacterized conserved protein; [PF07774] Protein of unknown function (DUF1620); [PTHR21573] UNCHARACTERIZED47.730.6169
16 Mapoly0037s0012 [KOG2357] Uncharacterized conserved protein; [PTHR12883] ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED; [PF07946] Protein of unknown function (DUF1682)48.100.6414
17 Mapoly0046s0027 [PTHR10343] 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT49.960.6738
18 Mapoly0012s0182 -50.530.6250
19 Mapoly0015s0117 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [KOG0764] Mitochondrial FAD carrier protein; [PTHR24089:SF62] SUBFAMILY NOT NAMED50.990.7105
20 Mapoly0056s0115 [PF00132] Bacterial transferase hexapeptide (six repeats); [PF00483] Nucleotidyl transferase; [KOG1461] Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6); [GO:0005515] protein binding; [GO:0009058] biosynthetic process; [PF02020] eIF4-gamma/eIF5/eIF2-epsilon; [PTHR22572] SUGAR-1-PHOSPHATE GUANYL TRANSFERASE; [K03240] translation initiation factor eIF-2B epsilon subunit; [GO:0016779] nucleotidyltransferase activity; [PTHR22572:SF7] EUKARIOTIC TRANSLATION INITIATION FACTOR 2B, EPSILON SUBUNIT54.030.7151
21 Mapoly0097s0084 [GO:0005524] ATP binding; [PTHR11752] HELICASE SKI2W; [KOG0948] Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily; [3.6.4.13] RNA helicase.; [K12598] ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]; [PF00270] DEAD/DEAH box helicase; [PF08148] DSHCT (NUC185) domain; [PF00271] Helicase conserved C-terminal domain; [PF13234] rRNA-processing arch domain; [GO:0003676] nucleic acid binding; [GO:0016818] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides54.580.7129
22 Mapoly0081s0022 [PF04068] Possible Fer4-like domain in RNase L inhibitor, RLI; [GO:0005524] ATP binding; [PF00037] 4Fe-4S binding domain; [GO:0016887] ATPase activity; [K06174] ATP-binding cassette, sub-family E, member 1; [KOG0063] RNAse L inhibitor, ABC superfamily; [GO:0051536] iron-sulfur cluster binding; [PTHR19248] ATP-BINDING TRANSPORT PROTEIN-RELATED; [PF00005] ABC transporter55.510.7078
23 Mapoly0177s0018 [PF13374] Tetratricopeptide repeat; [PF13424] Tetratricopeptide repeat; [PTHR19959] KINESIN LIGHT CHAIN56.580.7094
24 Mapoly0065s0028 [GO:0005840] ribosome; [PF00312] Ribosomal protein S15; [PTHR23321] RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [GO:0006412] translation62.810.7044
25 Mapoly0001s0540 [PF13418] Galactose oxidase, central domain; [PTHR23244] KELCH REPEAT DOMAIN; [PF13415] Galactose oxidase, central domain; [KOG1230] Protein containing repeated kelch motifs; [PF13422] Domain of unknown function (DUF4110)64.030.6935
26 Mapoly0054s0116 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PTHR13710] DNA HELICASE RECQ FAMILY MEMBER; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [GO:0003676] nucleic acid binding68.060.6848
27 Mapoly0004s0190 [GO:0019867] outer membrane; [PTHR12815] SORTING AND ASSEMBLY MACHINERY (SAM50) PROTEIN; [PF07244] Surface antigen variable number repeat; [KOG2602] Predicted cell surface protein homologous to bacterial outer membrane proteins; [PF01103] Surface antigen70.870.6438
28 Mapoly0038s0050 [PF06258] Mitochondrial fission ELM173.570.6631
29 Mapoly0002s0338 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding74.820.6965
30 Mapoly0036s0031 [GO:0003723] RNA binding; [K02945] small subunit ribosomal protein S1; [PF00575] S1 RNA binding domain; [PTHR15838] FAMILY NOT NAMED80.830.6812
31 Mapoly0112s0008 [GO:0005737] cytoplasm; [GO:0003743] translation initiation factor activity; [PTHR12399] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7; [KOG2479] Translation initiation factor 3, subunit d (eIF-3d); [K03251] translation initiation factor eIF-3 subunit 7; [PF05091] Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); [GO:0005852] eukaryotic translation initiation factor 3 complex84.170.6788
32 Mapoly0025s0013 [GO:0010468] regulation of gene expression; [GO:0005777] peroxisome; [PTHR14379] LIMKAIN B (LKAP); [PF01936] NYN domain; [PF12872] OST-HTH/LOTUS domain84.250.6828
33 Mapoly0114s0007 [KOG0724] Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains; [PF00249] Myb-like DNA-binding domain; [GO:0003682] chromatin binding; [PF00226] DnaJ domain; [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER; [K09522] DnaJ homolog subfamily C member 285.700.6522
34 Mapoly0005s0239 [PF04112] Mak10 subunit, NatC N(alpha)-terminal acetyltransferase; [PTHR21373] GLUCOSE REPRESSIBLE PROTEIN MAK10; [KOG2343] Glucose-repressible protein and related proteins87.550.6896
35 Mapoly0029s0109 [GO:0003723] RNA binding; [PF01926] 50S ribosome-binding GTPase; [KOG1423] Ras-like GTPase ERA; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [PF07650] KH domain; [GO:0005525] GTP binding87.730.7000
36 Mapoly0007s0105 [PF04280] Tim44-like domain90.360.6487
37 Mapoly0001s0039 [PF03914] CBF/Mak21 family; [PTHR12048] CCAAT-BINDING FACTOR-RELATED; [KOG2038] CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein91.540.6949
38 Mapoly0094s0042 -92.560.6325
39 Mapoly0011s0124 [PTHR12225] ADHESION REGULATING MOLECULE 1 (110 KDA CELL MEMBRANE GLYCOPROTEIN); [GO:0005737] cytoplasm; [GO:0005634] nucleus; [KOG3037] Cell membrane glycoprotein; [PF04683] Proteasome complex subunit Rpn13 ubiquitin receptor93.350.6435
40 Mapoly0060s0114 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE94.470.6699
41 Mapoly0097s0048 [PF03109] ABC1 family; [PTHR10566] CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED; [KOG1235] Predicted unusual protein kinase; [K08869] aarF domain-containing kinase94.980.6751
42 Mapoly0004s0256 [PF00009] Elongation factor Tu GTP binding domain; [PF00679] Elongation factor G C-terminus; [GO:0003924] GTPase activity; [PTHR23115] TRANSLATION FACTOR; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 2; [KOG0462] Elongation factor-type GTP-binding protein96.120.5532
43 Mapoly0021s0161 [KOG0331] ATP-dependent RNA helicase; [GO:0003723] RNA binding; [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PF08152] GUCT (NUC152) domain; [GO:0005634] nucleus; [PTHR24031:SF136] PREDICTED PROTEIN (FRAGMENT); [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding102.480.6032
44 Mapoly0052s0036 [GO:0005524] ATP binding; [PTHR10593:SF1] SERINE/THREONINE-PROTEIN KINASE RIO2 (RIO KINASE 2); [KOG2268] Serine/threonine protein kinase; [2.7.11.1] Non-specific serine/threonine protein kinase.; [PF01163] RIO1 family; [GO:0006468] protein phosphorylation; [GO:0003824] catalytic activity; [PTHR10593] SERINE/THREONINE-PROTEIN KINASE RIO; [PF09202] Rio2, N-terminal; [K07179] RIO kinase 2 [EC:2.7.11.1]; [GO:0004674] protein serine/threonine kinase activity104.630.6856
45 Mapoly0002s0327 [K01552] arsenite-transporting ATPase [EC:3.6.3.16]; [KOG0209] P-type ATPase; [GO:0000166] nucleotide binding; [GO:0016021] integral to membrane; [PF00702] haloacid dehalogenase-like hydrolase; [GO:0016887] ATPase activity; [3.6.3.-] Acting on acid anhydrides; catalyzing transmembrane movement of substances.; [GO:0006812] cation transport; [PTHR24093] FAMILY NOT NAMED; [PTHR24093:SF82] ATPASE, P-TYPE, HAD SUPERFAMILY, SUBFAMILY IC, PUTATIVE; [GO:0046872] metal ion binding; [PF00122] E1-E2 ATPase107.470.6733
46 Mapoly0082s0025 [PTHR22870] REGULATOR OF CHROMOSOME CONDENSATION; [KOG4214] Myotrophin and similar proteins; [PF00415] Regulator of chromosome condensation (RCC1) repeat; [PF12796] Ankyrin repeats (3 copies)108.560.6156
47 Mapoly0052s0112 [PF00472] RF-1 domain; [GO:0005737] cytoplasm; [K02835] peptide chain release factor RF-1; [PTHR11075] PEPTIDE CHAIN RELEASE FACTOR; [PF03462] PCRF domain; [PTHR11075:SF9] PEPTIDE CHAIN RELEASE FACTOR 1; [GO:0006415] translational termination; [KOG2726] Mitochondrial polypeptide chain release factor; [GO:0016149] translation release factor activity, codon specific; [GO:0003747] translation release factor activity113.370.6649
48 Mapoly0028s0111 [PF07797] Protein of unknown function (DUF1639)117.560.6591
49 Mapoly0035s0103 [PF03109] ABC1 family; [KOG1236] Predicted unusual protein kinase; [PTHR10566] CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED; [PTHR10566:SF6] BETA-LACTAMASE-RELATED; [K08869] aarF domain-containing kinase117.800.6580
50 Mapoly0036s0101 -118.080.6433
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