Guide Gene

Gene ID
Mapoly0013s0183
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[KOG2739] Leucine-rich acidic nuclear protein; [PF14580] Leucine-rich repeat; [PTHR11375] ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0013s0183 [KOG2739] Leucine-rich acidic nuclear protein; [PF14580] Leucine-rich repeat; [PTHR11375] ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 0.00 1.0000
1 Mapoly0052s0032 [GO:0006333] chromatin assembly or disassembly; [PF04729] ASF1 like histone chaperone; [K10753] histone chaperone ASF1; [PTHR12040] ANTI-SILENCING PROTEIN 1; [GO:0005634] nucleus2.450.8120
2 Mapoly0001s0525 [K14408] cleavage stimulation factor subunit 3; [GO:0006397] mRNA processing; [GO:0005634] nucleus; [KOG1914] mRNA cleavage and polyadenylation factor I complex, subunit RNA14; [PTHR19980] RNA CLEAVAGE STIMULATION FACTOR; [PF05843] Suppressor of forked protein (Suf)2.650.8506
3 Mapoly0006s0154 -2.650.8097
4 Mapoly0118s0038 -3.460.8363
5 Mapoly0137s0008 [PF06278] Protein of unknown function (DUF1032); [PTHR14324] FAMILY NOT NAMED; [PTHR14324:SF3] SUBFAMILY NOT NAMED; [K11490] condensin-2 complex subunit H2; [KOG2359] Uncharacterized conserved protein5.480.8276
6 Mapoly0005s0005 [PF00628] PHD-finger; [GO:0005515] protein binding; [PF00856] SET domain; [PTHR22884] SET DOMAIN PROTEINS6.930.7852
7 Mapoly0089s0007 [PF04821] Timeless protein; [PTHR22940:SF4] GB DEF: ARABIDOPSIS THALIANA GENOMIC DNA, CHROMOSOME 5, P1 CLONE:MXC20; [PF05029] Timeless protein C terminal region; [K03155] timeless; [KOG1974] DNA topoisomerase I-interacting protein; [PTHR22940] TIMEOUT/TIMELESS-28.940.7948
8 Mapoly0102s0024 [GO:0006355] regulation of transcription, DNA-dependent; [PF14443] DBC1; [KOG3227] Calcium-responsive transcription coactivator; [PTHR14304] P30 DBC PROTEIN12.170.8181
9 Mapoly0105s0060 [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [K12898] heterogeneous nuclear ribonucleoprotein F/H; [KOG4211] Splicing factor hnRNP-F and related RNA-binding proteins; [PTHR13976] HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED14.660.8133
10 Mapoly0003s0275 [PF00097] Zinc finger, C3HC4 type (RING finger); [GO:0046872] metal ion binding; [PTHR10825] RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT19.000.7697
11 Mapoly0003s0009 [GO:0005515] protein binding; [PTHR18763] WD-REPEAT PROTEIN 18; [PF00400] WD domain, G-beta repeat19.180.7597
12 Mapoly0092s0032 [PTHR22597] POLYCOMB GROUP PROTEIN; [PTHR22597:SF0] SUBFAMILY NOT NAMED; [PF09733] VEFS-Box of polycomb protein19.210.8029
13 Mapoly0009s0028 [PTHR22812] CHROMOBOX PROTEIN; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain20.070.7843
14 Mapoly0108s0041 [PTHR14978:SF0] SUBFAMILY NOT NAMED; [PTHR14978] BETA-CATENIN-LIKE PROTEIN 1 (NUCLEAR ASSOCIATED PROTEIN); [K12864] beta-catenin-like protein 1; [KOG2734] Uncharacterized conserved protein; [PF08216] Catenin-beta-like, Arm-motif containing nuclear20.980.7656
15 Mapoly0034s0031 [GO:0007094] mitotic spindle assembly checkpoint; [K06638] mitotic spindle assembly checkpoint protein MAD1; [KOG4593] Mitotic checkpoint protein MAD1; [PTHR23168] MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 (MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1); [PF05557] Mitotic checkpoint protein; [PTHR23168:SF0] SUBFAMILY NOT NAMED21.910.8062
16 Mapoly0060s0105 [PTHR24012] FAMILY NOT NAMED; [KOG4207] Predicted splicing factor, SR protein superfamily; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)22.140.7833
17 Mapoly0041s0116 [PTHR31246] FAMILY NOT NAMED; [PF07058] Myosin II heavy chain-like; [GO:0008017] microtubule binding; [GO:0007010] cytoskeleton organization24.700.7249
18 Mapoly0113s0034 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PF01698] Floricaula / Leafy protein26.380.7594
19 Mapoly0033s0045 -26.510.7425
20 Mapoly0074s0003 [GO:0003677] DNA binding; [PF12254] DNA polymerase alpha subunit p180 N terminal; [GO:0006260] DNA replication; [GO:0001882] nucleoside binding; [K02320] DNA polymerase alpha subunit A [EC:2.7.7.7]; [GO:0000166] nucleotide binding; [2.7.7.7] DNA-directed DNA polymerase.; [PF00136] DNA polymerase family B; [GO:0006270] DNA replication initiation; [PF08996] DNA Polymerase alpha zinc finger; [KOG0970] DNA polymerase alpha, catalytic subunit; [GO:0003887] DNA-directed DNA polymerase activity; [PF03104] DNA polymerase family B, exonuclease domain; [PTHR10322] DNA POLYMERASE CATALYTIC SUBUNIT26.830.7744
21 Mapoly0034s0011 [PF09133] SANTA (SANT Associated)27.550.7877
22 Mapoly0037s0072 [GO:0005515] protein binding; [PTHR21712] UNCHARACTERIZED; [PF00498] FHA domain27.710.7488
23 Mapoly0009s0067 [PTHR31789] FAMILY NOT NAMED27.750.7632
24 Mapoly0024s0141 [GO:0005507] copper ion binding; [GO:0009055] electron carrier activity; [PF02298] Plastocyanin-like domain28.140.7216
25 Mapoly0061s0078 [KOG1361] Predicted hydrolase involved in interstrand cross-link repair; [PTHR23240] DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED; [PF12706] Beta-lactamase superfamily domain; [PF07522] DNA repair metallo-beta-lactamase; [PF00536] SAM domain (Sterile alpha motif)29.090.7701
26 Mapoly0160s0021 [PTHR11062] EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED; [KOG1021] Acetylglucosaminyltransferase EXT1/exostosin 1; [PF03016] Exostosin family29.660.7362
27 Mapoly0098s0012 [PTHR23147] SERINE/ARGININE RICH SPLICING FACTOR; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)32.020.7387
28 Mapoly0036s0095 [PTHR10598] SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2; [GO:0005515] protein binding; [PF00622] SPRY domain33.230.7048
29 Mapoly0105s0047 [PTHR12447] UNCHARACTERIZED WITH ANKYRIN REPEAT DOMAIN; [PF11904] GPCR-chaperone; [KOG0522] Ankyrin repeat protein; [PTHR12447:SF5] UNCHARACTERIZED; [PF13857] Ankyrin repeats (many copies)33.230.7350
30 Mapoly0024s0112 [GO:0005643] nuclear pore; [KOG1964] Nuclear pore complex, rNup107 component (sc Nup84); [PTHR13003] NUP107-RELATED; [GO:0006810] transport; [PF04121] Nuclear pore protein 84 / 107; [K14301] nuclear pore complex protein Nup10733.320.7747
31 Mapoly0065s0067 [PTHR13165] ARSENITE-RESISTANCE PROTEIN 2; [PF12066] Domain of unknown function (DUF3546); [PF04959] Arsenite-resistance protein 2; [KOG2295] C2H2 Zn-finger protein; [PTHR13165:SF0] SUBFAMILY NOT NAMED34.290.7654
32 Mapoly0065s0059 [PF02170] PAZ domain; [PF08699] Domain of unknown function (DUF1785); [PTHR22891] EUKARYOTIC TRANSLATION INITIATION FACTOR 2C; [PF02171] Piwi domain; [GO:0005515] protein binding; [KOG1041] Translation initiation factor 2C (eIF-2C) and related proteins34.860.7123
33 Mapoly0015s0045 [KOG0533] RRM motif-containing protein; [PTHR19965] RNA AND EXPORT FACTOR BINDING PROTEIN; [K12881] THO complex subunit 4; [PF13865] C-terminal duplication domain of Friend of PRMT1; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)36.520.7529
34 Mapoly0001s0024 [GO:0005634] nucleus; [GO:0003677] DNA binding; [KOG2402] Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein); [GO:0006352] DNA-dependent transcription, initiation; [GO:0016570] histone modification; [PTHR13115:SF8] SUBFAMILY NOT NAMED; [PF03126] Plus-3 domain; [PTHR13115] UNCHARACTERIZED36.740.7555
35 Mapoly0186s0008 [GO:0003676] nucleic acid binding; [KOG0106] Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily); [PTHR10548] SPLICING FACTOR, ARGININE/SERINE-RICH; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)37.550.7349
36 Mapoly0029s0028 [PF00249] Myb-like DNA-binding domain; [GO:0005515] protein binding; [PF00569] Zinc finger, ZZ type; [GO:0003682] chromatin binding; [GO:0008270] zinc ion binding; [PF04433] SWIRM domain; [PTHR12374] TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED; [KOG0457] Histone acetyltransferase complex SAGA/ADA, subunit ADA2; [K11314] transcriptional adapter 2-alpha39.120.7474
37 Mapoly0043s0056 [K12831] splicing factor 3B subunit 4; [KOG0131] Splicing factor 3b, subunit 4; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)39.990.7401
38 Mapoly0031s0090 [KOG0379] Kelch repeat-containing proteins; [PF13418] Galactose oxidase, central domain; [PTHR23244] KELCH REPEAT DOMAIN; [PF13415] Galactose oxidase, central domain40.190.7724
39 Mapoly0019s0028 [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [KOG0117] Heterogeneous nuclear ribonucleoprotein R (RRM superfamily); [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)44.120.7486
40 Mapoly0015s0126 [GO:0008641] small protein activating enzyme activity; [GO:0005524] ATP binding; [K10685] ubiquitin-like 1-activating enzyme E1 B [EC:6.3.2.19]; [KOG2013] SMT3/SUMO-activating complex, catalytic component UBA2; [PF00899] ThiF family; [PF02134] Repeat in ubiquitin-activating (UBA) protein; [6.3.2.19] Ubiquitin--protein ligase.; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [GO:0003824] catalytic activity; [PF10585] Ubiquitin-activating enzyme active site; [GO:0006464] cellular protein modification process; [PF14732] Ubiquitin/SUMO-activating enzyme ubiquitin-like domain45.830.7541
41 Mapoly0003s0175 [KOG1105] Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1; [PF07500] Transcription factor S-II (TFIIS), central domain; [GO:0008270] zinc ion binding; [PTHR11477] TRANSCRIPTION ELONGATION FACTOR S-II; [GO:0006351] transcription, DNA-dependent; [GO:0003676] nucleic acid binding; [K03145] transcription elongation factor S-II; [PF01096] Transcription factor S-II (TFIIS)46.650.7213
42 Mapoly0051s0029 [PTHR12735] BOLA-LIKE PROTEIN-RELATED; [KOG2313] Stress-induced protein UVI31+; [PF13837] Myb/SANT-like DNA-binding domain; [PF01722] BolA-like protein46.740.6919
43 Mapoly0068s0031 [KOG1882] Transcriptional regulator SNIP1, contains FHA domain; [GO:0005515] protein binding; [K13108] smad nuclear-interacting protein 1; [PF00498] FHA domain; [PTHR23308] NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-147.240.7432
44 Mapoly0160s0022 [PF06592] Protein of unknown function (DUF1138)48.500.7310
45 Mapoly0012s0166 [PF09405] CASC3/Barentsz eIF4AIII binding; [PTHR22814:SF47] HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN; [PTHR22814] COPPER TRANSPORT PROTEIN ATOX1-RELATED48.630.7365
46 Mapoly0188s0017 [KOG4205] RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)48.930.7237
47 Mapoly0070s0034 [KOG0108] mRNA cleavage and polyadenylation factor I complex, subunit RNA15; [PF14327] Hinge domain of cleavage stimulation factor subunit 2; [PTHR23139:SF8] RNA RECOGNITION MOTIF CONTAINING PROTEIN; [PTHR23139] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding; [K14407] cleavage stimulation factor subunit 2; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)50.080.7406
48 Mapoly0005s0061 [PF00089] Trypsin; [PTHR22939] SERINE PROTEASE FAMILY S1C HTRA-RELATED; [GO:0005515] protein binding; [PF13180] PDZ domain; [KOG1320] Serine protease; [GO:0004252] serine-type endopeptidase activity; [GO:0006508] proteolysis52.250.7379
49 Mapoly0001s0121 [PF00641] Zn-finger in Ran binding protein and others; [PTHR23238] RNA BINDING PROTEIN; [KOG1995] Conserved Zn-finger protein; [GO:0008270] zinc ion binding52.480.7316
50 Mapoly0074s0043 [GO:0005685] U1 snRNP; [GO:0006376] mRNA splice site selection; [PF03194] LUC7 N_terminus; [PTHR12375] RNA-BINDING PROTEIN LUC7-RELATED; [GO:0003729] mRNA binding53.690.7498
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