Guide Gene
- Gene ID
- Mapoly0043s0056
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [K12831] splicing factor 3B subunit 4; [KOG0131] Splicing factor 3b, subunit 4; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0043s0056 [K12831] splicing factor 3B subunit 4; [KOG0131] Splicing factor 3b, subunit 4; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.00 1.0000 1 Mapoly0058s0003 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [PF04818] RNA polymerase II-binding domain.; [PTHR12323] SR-RELATED CTD ASSOCIATED FACTOR 6; [PF01805] Surp module 1.41 0.8551 2 Mapoly0001s0525 [K14408] cleavage stimulation factor subunit 3; [GO:0006397] mRNA processing; [GO:0005634] nucleus; [KOG1914] mRNA cleavage and polyadenylation factor I complex, subunit RNA14; [PTHR19980] RNA CLEAVAGE STIMULATION FACTOR; [PF05843] Suppressor of forked protein (Suf) 5.48 0.8139 3 Mapoly0158s0010 [KOG1375] Beta tubulin; [PF00091] Tubulin/FtsZ family, GTPase domain; [GO:0005874] microtubule; [K07375] tubulin beta; [PTHR11588] TUBULIN; [GO:0007017] microtubule-based process; [PF03953] Tubulin C-terminal domain; [GO:0006184] GTP catabolic process; [GO:0003924] GTPase activity; [GO:0051258] protein polymerization; [GO:0043234] protein complex; [GO:0005525] GTP binding 6.78 0.7522 4 Mapoly0007s0173 - 7.14 0.8136 5 Mapoly0006s0154 - 8.37 0.7733 6 Mapoly0034s0112 - 12.00 0.7820 7 Mapoly0006s0069 - 12.04 0.7757 8 Mapoly0052s0032 [GO:0006333] chromatin assembly or disassembly; [PF04729] ASF1 like histone chaperone; [K10753] histone chaperone ASF1; [PTHR12040] ANTI-SILENCING PROTEIN 1; [GO:0005634] nucleus 14.46 0.7565 9 Mapoly0001s0121 [PF00641] Zn-finger in Ran binding protein and others; [PTHR23238] RNA BINDING PROTEIN; [KOG1995] Conserved Zn-finger protein; [GO:0008270] zinc ion binding 15.87 0.7629 10 Mapoly0043s0108 [GO:0006355] regulation of transcription, DNA-dependent; [PTHR13831] MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS; [GO:0005515] protein binding; [PF07569] TUP1-like enhancer of split; [PTHR13831:SF0] SUBFAMILY NOT NAMED; [GO:0005634] nucleus; [K11293] protein HIRA/HIR1; [KOG0973] Histone transcription regulator HIRA, WD repeat superfamily; [PF00400] WD domain, G-beta repeat 19.36 0.7509 11 Mapoly0147s0033 [PF07738] Sad1 / UNC-like C-terminal; [PTHR12911] SAD1/UNC-84-LIKE PROTEIN-RELATED; [KOG2687] Spindle pole body protein, contains UNC-84 domain 21.42 0.7706 12 Mapoly0098s0012 [PTHR23147] SERINE/ARGININE RICH SPLICING FACTOR; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27.75 0.7436 13 Mapoly0009s0015 [PF00078] Reverse transcriptase (RNA-dependent DNA polymerase); [PTHR12066] TELOMERASE REVERSE TRANSCRIPTASE; [GO:0003964] RNA-directed DNA polymerase activity; [K11126] telomerase reverse transcriptase [EC:2.7.7.49]; [PTHR12066:SF0] SUBFAMILY NOT NAMED; [2.7.7.49] RNA-directed DNA polymerase.; [PF12009] Telomerase ribonucleoprotein complex - RNA binding domain; [KOG1005] Telomerase catalytic subunit/reverse transcriptase TERT 28.11 0.7699 14 Mapoly0138s0046 [KOG1803] DNA helicase; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [PF13086] AAA domain; [PF13087] AAA domain 28.14 0.7633 15 Mapoly0151s0018 [PF00917] MATH domain; [GO:0005515] protein binding; [PTHR24006] FAMILY NOT NAMED 28.77 0.7755 16 Mapoly0005s0051 [GO:0003723] RNA binding; [GO:0000339] RNA cap binding; [GO:0045292] mRNA cis splicing, via spliceosome; [GO:0051028] mRNA transport; [PF02854] MIF4G domain; [GO:0005515] protein binding; [KOG1104] Nuclear cap-binding complex, subunit NCBP1/CBP80; [K12882] nuclear cap-binding protein subunit 1; [GO:0016070] RNA metabolic process; [PTHR12412] CAP BINDING PROTEIN; [GO:0005846] nuclear cap binding complex; [PF09090] MIF4G like; [PF09088] MIF4G like 29.12 0.7724 17 Mapoly0039s0094 [PTHR15856] PHD FINGER PROTEIN 20-RELATED; [KOG1844] PHD Zn-finger proteins 31.84 0.7422 18 Mapoly0019s0032 - 33.24 0.7618 19 Mapoly0014s0117 [PF04484] Family of unknown function (DUF566); [PTHR31807] FAMILY NOT NAMED 33.47 0.7136 20 Mapoly0061s0120 [PTHR13269] UNCHARACTERIZED; [PTHR13269:SF6] SUBFAMILY NOT NAMED; [PF09531] Nucleoporin protein Ndc1-Nup 36.74 0.7595 21 Mapoly0013s0183 [KOG2739] Leucine-rich acidic nuclear protein; [PF14580] Leucine-rich repeat; [PTHR11375] ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 39.99 0.7401 22 Mapoly0061s0085 [PF14868] Domain of unknown function (DUF4487) 42.45 0.7589 23 Mapoly0025s0108 [PF00225] Kinesin motor domain; [GO:0005524] ATP binding; [PTHR24115] FAMILY NOT NAMED; [KOG0242] Kinesin-like protein; [GO:0005871] kinesin complex; [GO:0007018] microtubule-based movement; [GO:0008017] microtubule binding; [GO:0003777] microtubule motor activity; [PF11995] Domain of unknown function (DUF3490) 42.99 0.7380 24 Mapoly0147s0014 [PTHR14790] FAMILY NOT NAMED; [PF08585] Domain of unknown function (DUF1767) 45.25 0.7466 25 Mapoly0031s0090 [KOG0379] Kelch repeat-containing proteins; [PF13418] Galactose oxidase, central domain; [PTHR23244] KELCH REPEAT DOMAIN; [PF13415] Galactose oxidase, central domain 45.30 0.7576 26 Mapoly0005s0221 [GO:0005643] nuclear pore; [PTHR12084] NUCLEAR PORE GLYCOPROTEIN P62-RELATED; [KOG2196] Nuclear porin; [PTHR12084:SF0] SUBFAMILY NOT NAMED; [K14306] nuclear pore complex protein Nup62; [PF05064] Nsp1-like C-terminal region; [GO:0017056] structural constituent of nuclear pore 47.05 0.7491 27 Mapoly0004s0300 [GO:0005524] ATP binding; [PTHR11909:SF7] CELL DIVISION CONTROL PROTEIN 7; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [K02214] cell division control protein 7 [EC:2.7.11.1]; [KOG1167] Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination; [GO:0006468] protein phosphorylation; [PTHR11909] CASEIN KINASE-RELATED 47.92 0.7608 28 Mapoly0070s0034 [KOG0108] mRNA cleavage and polyadenylation factor I complex, subunit RNA15; [PF14327] Hinge domain of cleavage stimulation factor subunit 2; [PTHR23139:SF8] RNA RECOGNITION MOTIF CONTAINING PROTEIN; [PTHR23139] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding; [K14407] cleavage stimulation factor subunit 2; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48.00 0.7434 29 Mapoly0009s0229 [PF01987] Mitochondrial biogenesis AIM24 49.36 0.7541 30 Mapoly0075s0053 [GO:0005524] ATP binding; [KOG0055] Multidrug/pheromone exporter, ABC superfamily; [GO:0016021] integral to membrane; [PF00664] ABC transporter transmembrane region; [GO:0016887] ATPase activity; [GO:0006810] transport; [GO:0055085] transmembrane transport; [GO:0042626] ATPase activity, coupled to transmembrane movement of substances; [PTHR24221] FAMILY NOT NAMED; [PF00005] ABC transporter 51.33 0.7073 31 Mapoly0042s0049 - 53.10 0.7546 32 Mapoly0051s0023 [PF00488] MutS domain V; [GO:0005524] ATP binding; [KOG0217] Mismatch repair ATPase MSH6 (MutS family); [PTHR11361] DNA MISMATCH REPAIR MUTS RELATED PROTEINS; [PF05188] MutS domain II; [GO:0006298] mismatch repair; [GO:0030983] mismatched DNA binding; [PF01624] MutS domain I; [PF05192] MutS domain III 54.26 0.7591 33 Mapoly0137s0008 [PF06278] Protein of unknown function (DUF1032); [PTHR14324] FAMILY NOT NAMED; [PTHR14324:SF3] SUBFAMILY NOT NAMED; [K11490] condensin-2 complex subunit H2; [KOG2359] Uncharacterized conserved protein 55.42 0.7429 34 Mapoly0034s0031 [GO:0007094] mitotic spindle assembly checkpoint; [K06638] mitotic spindle assembly checkpoint protein MAD1; [KOG4593] Mitotic checkpoint protein MAD1; [PTHR23168] MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 (MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1); [PF05557] Mitotic checkpoint protein; [PTHR23168:SF0] SUBFAMILY NOT NAMED 55.50 0.7525 35 Mapoly0016s0155 [GO:0005515] protein binding; [PF13417] Glutathione S-transferase, N-terminal domain; [KOG0406] Glutathione S-transferase; [PTHR11260] GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING; [PF13410] Glutathione S-transferase, C-terminal domain; [PF01814] Hemerythrin HHE cation binding domain 55.78 0.7202 36 Mapoly0001s0406 [GO:0000922] spindle pole; [KOG2000] Gamma-tubulin complex, DGRIP91/SPC98 component; [PF04130] Spc97 / Spc98 family; [GO:0005856] cytoskeleton; [GO:0005815] microtubule organizing center; [GO:0000226] microtubule cytoskeleton organization; [PTHR19302] GAMMA TUBULIN COMPLEX PROTEIN; [GO:0007020] microtubule nucleation; [PTHR19302:SF14] GAMMA-TUBULIN COMPLEX COMPONENT 3 (GCP-3) 56.44 0.7255 37 Mapoly0081s0073 - 61.48 0.7475 38 Mapoly0035s0137 [GO:0005643] nuclear pore; [PTHR10350:SF6] NUCLEOPORIN 155; [PF03177] Non-repetitive/WGA-negative nucleoporin C-terminal; [K14312] nuclear pore complex protein Nup155; [KOG1900] Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170); [GO:0006913] nucleocytoplasmic transport; [PF08801] Nup133 N terminal like; [GO:0017056] structural constituent of nuclear pore; [PTHR10350] NUCLEAR PORE COMPLEX PROTEIN NUP155 61.77 0.7521 39 Mapoly0091s0056 [PF05918] Apoptosis inhibitory protein 5 (API5); [KOG2213] Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins; [PTHR12758] APOPTOSIS INHIBITOR 5-RELATED 63.91 0.7393 40 Mapoly0119s0054 [GO:0008641] small protein activating enzyme activity; [GO:0005524] ATP binding; [PF09358] Ubiquitin-activating enzyme e1 C-terminal domain; [PF00899] ThiF family; [PF02134] Repeat in ubiquitin-activating (UBA) protein; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [GO:0003824] catalytic activity; [PF10585] Ubiquitin-activating enzyme active site; [GO:0006464] cellular protein modification process; [PTHR10953:SF4] UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 1 (UBIQUITIN-ACTIVATING ENZYME E1) 64.40 0.7439 41 Mapoly0019s0119 - 66.39 0.7487 42 Mapoly0102s0024 [GO:0006355] regulation of transcription, DNA-dependent; [PF14443] DBC1; [KOG3227] Calcium-responsive transcription coactivator; [PTHR14304] P30 DBC PROTEIN 68.79 0.7504 43 Mapoly0028s0049 [GO:0005515] protein binding; [PTHR12816] RETINOBLASTOMA BINDING PROTEIN 5; [KOG1273] WD40 repeat protein; [PF00400] WD domain, G-beta repeat 68.87 0.6752 44 Mapoly0075s0020 [GO:0006396] RNA processing; [PTHR13361:SF1] SUBFAMILY NOT NAMED; [KOG4672] Uncharacterized conserved low complexity protein; [PTHR13361] FAMILY NOT NAMED; [PF09429] WW domain binding protein 11 70.10 0.7116 45 Mapoly0094s0004 [GO:0003677] DNA binding; [PTHR22970:SF1] SUBFAMILY NOT NAMED; [PTHR22970] FAMILY NOT NAMED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005622] intracellular 70.14 0.7408 46 Mapoly0002s0125 [PTHR25040] FAMILY NOT NAMED; [PF11926] Domain of unknown function (DUF3444); [PTHR25040:SF79] SUBFAMILY NOT NAMED; [PF00226] DnaJ domain 71.78 0.7490 47 Mapoly0024s0112 [GO:0005643] nuclear pore; [KOG1964] Nuclear pore complex, rNup107 component (sc Nup84); [PTHR13003] NUP107-RELATED; [GO:0006810] transport; [PF04121] Nuclear pore protein 84 / 107; [K14301] nuclear pore complex protein Nup107 72.42 0.7424 48 Mapoly0080s0001 [GO:0005515] protein binding; [PTHR15271] CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B; [KOG1009] Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats); [K10751] chromatin assembly factor 1 subunit B; [PF00400] WD domain, G-beta repeat 72.81 0.7472 49 Mapoly0034s0048 [PTHR10943] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT; [PTHR10943:SF2] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1 (26S PROTEASOME REGULATORY SUBUNIT RPN2); [KOG2062] 26S proteasome regulatory complex, subunit RPN2/PSMD1; [K03032] 26S proteasome regulatory subunit N2; [PF01851] Proteasome/cyclosome repeat; [PF13646] HEAT repeats 73.61 0.7400 50 Mapoly0009s0019 [KOG1898] Splicing factor 3b, subunit 3; [PTHR10644:SF1] SPLICING FACTOR 3B SUBUNIT 3 (SPLICEOSOME-ASSOCIATED PROTEIN 130)(SAP 130); [PF10433] Mono-functional DNA-alkylating methyl methanesulfonate N-term; [PF03178] CPSF A subunit region; [GO:0005634] nucleus; [PTHR10644] DNA REPAIR/RNA PROCESSING CPSF FAMILY; [GO:0003676] nucleic acid binding; [K12830] splicing factor 3B subunit 3 74.46 0.7440