Guide Gene

Gene ID
Mapoly0052s0078
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[KOG2042] Ubiquitin fusion degradation protein-2; [GO:0016567] protein ubiquitination; [PF10408] Ubiquitin elongating factor core; [PTHR13931] UBIQUITINATION FACTOR E4; [GO:0034450] ubiquitin-ubiquitin ligase activity; [GO:0006511] ubiquitin-dependent protein catabolic process; [6.3.2.19] Ubiquitin--protein ligase.; [GO:0004842] ubiquitin-protein ligase activity; [GO:0000151] ubiquitin ligase complex; [PF04564] U-box domain; [K10597] ubiquitin conjugation factor E4 B [EC:6.3.2.19]; [PTHR13931:SF2] UBIQUITINATION FACTOR E4B/UFD2(YEAST)

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0052s0078 [KOG2042] Ubiquitin fusion degradation protein-2; [GO:0016567] protein ubiquitination; [PF10408] Ubiquitin elongating factor core; [PTHR13931] UBIQUITINATION FACTOR E4; [GO:0034450] ubiquitin-ubiquitin ligase activity; [GO:0006511] ubiquitin-dependent protein catabolic process; [6.3.2.19] Ubiquitin--protein ligase.; [GO:0004842] ubiquitin-protein ligase activity; [GO:0000151] ubiquitin ligase complex; [PF04564] U-box domain; [K10597] ubiquitin conjugation factor E4 B [EC:6.3.2.19]; [PTHR13931:SF2] UBIQUITINATION FACTOR E4B/UFD2(YEAST) 0.00 1.0000
1 Mapoly0034s0048 [PTHR10943] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT; [PTHR10943:SF2] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1 (26S PROTEASOME REGULATORY SUBUNIT RPN2); [KOG2062] 26S proteasome regulatory complex, subunit RPN2/PSMD1; [K03032] 26S proteasome regulatory subunit N2; [PF01851] Proteasome/cyclosome repeat; [PF13646] HEAT repeats4.580.8117
2 Mapoly0030s0152 [PTHR12820:SF0] SUBFAMILY NOT NAMED; [KOG2180] Late Golgi protein sorting complex, subunit Vps53; [PTHR12820] VACUOLAR SORTING PROTEIN 53; [PF04100] Vps53-like, N-terminal5.480.7698
3 Mapoly0028s0019 [K07359] calcium/calmodulin-dependent protein kinase kinase [EC:2.7.11.17]; [GO:0005524] ATP binding; [PTHR24347] SERINE/THREONINE-PROTEIN KINASE; [PF00069] Protein kinase domain; [PTHR24347:SF1] CALCIUM/CALMODULIN DEPENDENT PROTEIN KINASE KINASE 1; [2.7.11.17] Calcium/calmodulin-dependent protein kinase.; [GO:0004672] protein kinase activity; [KOG0616] cAMP-dependent protein kinase catalytic subunit (PKA); [GO:0006468] protein phosphorylation8.720.7824
4 Mapoly0005s0265 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [KOG0883] Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase; [PTHR11071:SF147] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF04641] Rtf2 RING-finger; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [K10598] peptidyl-prolyl cis-trans isomerase-like 2 [EC:5.2.1.8]8.830.7662
5 Mapoly0004s0129 [3.1.2.15] Ubiquitin thiolesterase.; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [PF12436] ICP0-binding domain of Ubiquitin-specific protease 7; [PF00917] MATH domain; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0005515] protein binding; [KOG1863] Ubiquitin carboxyl-terminal hydrolase; [PF14533] Ubiquitin-specific protease C-terminal; [PTHR24619] FAMILY NOT NAMED; [K11838] ubiquitin carboxyl-terminal hydrolase 7 [EC:3.1.2.15]14.390.7878
6 Mapoly0021s0140 [GO:0015035] protein disulfide oxidoreductase activity; [KOG1752] Glutaredoxin and related proteins; [PTHR23054] UNCHARACTERIZED; [PF00610] Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); [GO:0035556] intracellular signal transduction; [GO:0045454] cell redox homeostasis; [PF00462] Glutaredoxin; [GO:0009055] electron carrier activity; [PF04784] Protein of unknown function, DUF54715.300.7102
7 Mapoly0009s0155 [K11886] proteasome component ECM29; [PTHR23346:SF19] SUBFAMILY NOT NAMED; [PF13001] Proteasome stabiliser; [PTHR23346] TRANSLATIONAL ACTIVATOR GCN1-RELATED; [KOG0915] Uncharacterized conserved protein15.750.7937
8 Mapoly0034s0010 [KOG1454] Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily); [GO:0016747] transferase activity, transferring acyl groups other than amino-acyl groups; [PTHR22753:SF1] SUBFAMILY NOT NAMED; [PTHR22753] FAMILY NOT NAMED; [PF03982] Diacylglycerol acyltransferase; [PF12697] Alpha/beta hydrolase family21.630.7261
9 Mapoly0060s0059 [GO:0006355] regulation of transcription, DNA-dependent; [PTHR16557:SF4] gb def: Alkylated DNA repair protein alkB; [PTHR16557] ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED; [GO:0008270] zinc ion binding; [GO:0005634] nucleus; [KOG2845] Activating signal cointegrator 1; [PF06221] Putative zinc finger motif, C2HC5-type; [PF13532] 2OG-Fe(II) oxygenase superfamily23.660.7560
10 Mapoly0001s0364 [PTHR23322] FAS-ASSOCIATED PROTEIN; [PF02809] Ubiquitin interaction motif; [GO:0005515] protein binding; [PF00789] UBX domain; [PTHR23322:SF3] ARA4-INTERACTING PROTEIN24.740.6738
11 Mapoly0003s0245 -24.820.7464
12 Mapoly0136s0010 [K03028] 26S proteasome regulatory subunit N1; [GO:0000502] proteasome complex; [PTHR10943] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT; [KOG2005] 26S proteasome regulatory complex, subunit RPN1/PSMD2; [PTHR10943:SF1] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 (26S PROTEASOME REGULATORY SUBUNIT RPN1); [GO:0030234] enzyme regulator activity; [PF01851] Proteasome/cyclosome repeat; [GO:0042176] regulation of protein catabolic process32.250.7465
13 Mapoly0033s0036 [PTHR10357] ALPHA-AMYLASE; [GO:0004556] alpha-amylase activity; [GO:0005975] carbohydrate metabolic process; [PF07821] Alpha-amylase C-terminal beta-sheet domain; [KOG0471] Alpha-amylase; [GO:0003824] catalytic activity; [GO:0043169] cation binding; [GO:0005509] calcium ion binding; [PF00128] Alpha amylase, catalytic domain32.660.6579
14 Mapoly0176s0001 [PTHR13793] PHD FINGER PROTEINS; [PF10513] Enhancer of polycomb-like33.990.7640
15 Mapoly0046s0117 -34.860.6900
16 Mapoly0019s0132 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [PTHR13832] PROTEIN PHOSPHATASE 2C; [PF00481] Protein phosphatase 2C; [GO:0006468] protein phosphorylation; [GO:0003824] catalytic activity; [KOG0594] Protein kinase PCTAIRE and related kinases34.990.7367
17 Mapoly0173s0012 [PF04113] Gpi16 subunit, GPI transamidase component; [KOG2407] GPI transamidase complex, GPI16/PIG-T component, involved in glycosylphosphatidylinositol anchor biosynthesis; [K05292] phosphatidylinositol glycan, class T; [GO:0016255] attachment of GPI anchor to protein; [PTHR12959:SF11] GPI TRANSAMIDASE COMPONENT PIG-T; [GO:0042765] GPI-anchor transamidase complex; [PTHR12959] GPI TRANSAMIDASE COMPONENT PIG-T-RELATED37.090.7265
18 Mapoly0140s0008 [GO:0005097] Rab GTPase activator activity; [KOG4567] GTPase-activating protein; [PTHR22957:SF27] TBC1 DOMAIN FAMILY MEMBER 13; [PTHR22957] TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN; [GO:0032313] regulation of Rab GTPase activity; [PF00566] Rab-GTPase-TBC domain44.090.6685
19 Mapoly0010s0002 [GO:0016020] membrane; [KOG2431] 1, 2-alpha-mannosidase; [K01230] mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113]; [PTHR11742:SF7] ENDOPLASMIC RETICULUM MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE; [PTHR11742] MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED; [GO:0005509] calcium ion binding; [GO:0004571] mannosyl-oligosaccharide 1,2-alpha-mannosidase activity; [PF01532] Glycosyl hydrolase family 47; [3.2.1.113] Mannosyl-oligosaccharide 1,2-alpha-mannosidase.44.360.6683
20 Mapoly0066s0019 [PTHR13815] GOLGIN-8446.350.6286
21 Mapoly0013s0141 [PTHR19375] HEAT SHOCK PROTEIN 70KDA; [KOG0103] Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily; [PTHR19375:SF78] SUBFAMILY NOT NAMED; [PF00012] Hsp70 protein47.340.7102
22 Mapoly0006s0082 [PF00097] Zinc finger, C3HC4 type (RING finger); [PTHR12983] FAMILY NOT NAMED; [GO:0046872] metal ion binding48.060.7029
23 Mapoly0052s0082 -48.960.6890
24 Mapoly0002s0295 [PF01602] Adaptin N terminal region; [GO:0016192] vesicle-mediated transport; [PTHR11134] ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT; [PF02883] Adaptin C-terminal domain; [PF09066] Beta2-adaptin appendage, C-terminal sub-domain; [KOG1061] Vesicle coat complex AP-1/AP-2/AP-4, beta subunit; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [K12392] AP-1 complex subunit beta-1; [PTHR11134:SF3] ADAPTER-RELATED PROTEIN COMPLEX 1, BETA SUBUNIT49.490.7085
25 Mapoly0177s0019 [KOG0149] Predicted RNA-binding protein SEB4 (RRM superfamily); [PF01480] PWI domain; [PTHR23365] POLY-A BINDING PROTEIN 2; [GO:0006397] mRNA processing; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)50.020.7532
26 Mapoly0001s0156 [PTHR21737] POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3; [PF10312] Conserved mid region of cactin; [GO:0005515] protein binding; [PTHR21737:SF4] CACTIN-RELATED; [KOG2370] Cactin; [PF09732] Cactus-binding C-terminus of cactin protein56.620.7318
27 Mapoly0007s0203 -57.970.6836
28 Mapoly0010s0012 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF06461] Domain of Unknown Function (DUF1086); [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF00176] SNF2 family N-terminal domain; [PF06465] Domain of Unknown Function (DUF1087); [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [K11643] chromodomain-helicase-DNA-binding protein 4 [EC:3.6.4.12]; [KOG0384] Chromodomain-helicase DNA-binding protein58.860.7297
29 Mapoly0029s0126 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF09416] RNA helicase (UPF2 interacting domain); [GO:0004386] helicase activity; [GO:0005737] cytoplasm; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [GO:0008270] zinc ion binding; [PF13086] AAA domain; [3.6.4.-] Acting on acid anhydrides; involved in cellular and subcellular movement.; [K14326] regulator of nonsense transcripts 1 [EC:3.6.4.-]; [GO:0000184] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; [PF13087] AAA domain60.650.7349
30 Mapoly0179s0012 [GO:0016020] membrane; [PF00571] CBS domain; [GO:0006821] chloride transport; [PF00654] Voltage gated chloride channel; [GO:0055085] transmembrane transport; [GO:0005247] voltage-gated chloride channel activity; [GO:0030554] adenyl nucleotide binding; [PTHR11689] CHLORIDE CHANNEL62.930.7222
31 Mapoly0096s0071 -64.310.6920
32 Mapoly0074s0050 [GO:0005524] ATP binding; [K12815] pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [EC:3.6.4.13]; [GO:0004386] helicase activity; [KOG0924] mRNA splicing factor ATP-dependent RNA helicase; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold71.620.7259
33 Mapoly0014s0099 [PTHR22100] FAMILY NOT NAMED; [PF07814] Wings apart-like protein regulation of heterochromatin71.870.7248
34 Mapoly0190s0006 [KOG3794] CBF1-interacting corepressor CIR and related proteins; [PF10197] N-terminal domain of CBF1 interacting co-repressor CIR72.830.7264
35 Mapoly0004s0201 [PF07910] Peptidase family C78; [PTHR13226] FAMILY NOT NAMED; [PTHR13226:SF9] SUBFAMILY NOT NAMED74.220.6837
36 Mapoly0126s0036 -74.330.7133
37 Mapoly0063s0095 [PF00637] Region in Clathrin and VPS; [GO:0016192] vesicle-mediated transport; [PF12816] Golgi CORVET complex core vacuolar protein 8; [PTHR12816] RETINOBLASTOMA BINDING PROTEIN 5; [GO:0006886] intracellular protein transport75.580.6889
38 Mapoly0052s0017 -79.150.7018
39 Mapoly0091s0053 [KOG0963] Transcription factor/CCAAT displacement protein CDP1; [PTHR14043] CCAAT DISPLACEMENT PROTEIN-RELATED; [K09313] homeobox protein cut-like; [GO:0006891] intra-Golgi vesicle-mediated transport; [GO:0030173] integral to Golgi membrane; [PF08172] CASP C terminal79.320.6470
40 Mapoly0011s0178 [GO:0005524] ATP binding; [GO:0016021] integral to membrane; [PTHR24223] FAMILY NOT NAMED; [PF00664] ABC transporter transmembrane region; [GO:0016887] ATPase activity; [GO:0006810] transport; [GO:0055085] transmembrane transport; [KOG0054] Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily; [GO:0042626] ATPase activity, coupled to transmembrane movement of substances; [PF00005] ABC transporter79.650.6470
41 Mapoly0005s0269 [PF13855] Leucine rich repeat; [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [KOG0192] Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs; [PTHR24359] SERINE/THREONINE-PROTEIN KINASE SBK1; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [PF00560] Leucine Rich Repeat; [GO:0006468] protein phosphorylation; [PF14381] Ethylene-responsive protein kinase Le-CTR181.980.7254
42 Mapoly0038s0034 [GO:0016020] membrane; [K12385] Niemann-Pick C1 protein; [GO:0008158] hedgehog receptor activity; [KOG1933] Cholesterol transport protein (Niemann-Pick C disease protein); [PTHR10796] PATCHED-RELATED; [PF02460] Patched family; [PF12349] Sterol-sensing domain of SREBP cleavage-activation; [PTHR10796:SF35] NIEMANN-PICK C182.220.5936
43 Mapoly0137s0011 [PF07227] Protein of unknown function (DUF1423)84.330.6111
44 Mapoly0003s0185 [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [K00914] phosphatidylinositol 3-kinase [EC:2.7.1.137]; [GO:0046854] phosphatidylinositol phosphorylation; [KOG0906] Phosphatidylinositol 3-kinase VPS34, involved in signal transduction; [PTHR10048] PHOSPHATIDYLINOSITOL KINASE; [PF00613] Phosphoinositide 3-kinase family, accessory domain (PIK domain); [2.7.1.137] Phosphatidylinositol 3-kinase.; [PF00454] Phosphatidylinositol 3- and 4-kinase; [GO:0048015] phosphatidylinositol-mediated signaling; [PF00792] Phosphoinositide 3-kinase C284.470.6187
45 Mapoly0053s0006 [GO:0000287] magnesium ion binding; [PTHR24092] FAMILY NOT NAMED; [GO:0005524] ATP binding; [PF12710] haloacid dehalogenase-like hydrolase; [KOG0206] P-type ATPase; [GO:0000166] nucleotide binding; [GO:0015914] phospholipid transport; [GO:0016021] integral to membrane; [GO:0046872] metal ion binding; [PF00122] E1-E2 ATPase; [GO:0004012] phospholipid-translocating ATPase activity87.670.6795
46 Mapoly0074s0022 [PTHR15447] POLY [ADP-RIBOSE] POLYMERASE; [GO:0003950] NAD+ ADP-ribosyltransferase activity; [PF05406] WGR domain; [GO:0006471] protein ADP-ribosylation; [K10798] poly [ADP-ribose] polymerase [EC:2.4.2.30]; [PF02877] Poly(ADP-ribose) polymerase, regulatory domain; [GO:0003676] nucleic acid binding; [2.4.2.30] NAD(+) ADP-ribosyltransferase.; [KOG1037] NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins; [PF00644] Poly(ADP-ribose) polymerase catalytic domain; [PF02037] SAP domain88.900.6700
47 Mapoly0091s0046 [PF05641] Agenet domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR24098] FAMILY NOT NAMED89.400.7151
48 Mapoly0139s0004 [PTHR23081] RNA POLYMERASE II CTD PHOSPHATASE; [KOG1605] TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation); [PF03031] NLI interacting factor-like phosphatase; [GO:0005515] protein binding; [PF00533] BRCA1 C Terminus (BRCT) domain89.670.6925
49 Mapoly0082s0010 [PTHR13228] CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5; [KOG2211] Predicted Golgi transport complex 1 protein; [PF10392] Golgi transport complex subunit 5; [GO:0006891] intra-Golgi vesicle-mediated transport; [PTHR13228:SF3] SUBFAMILY NOT NAMED; [GO:0017119] Golgi transport complex93.450.6804
50 Mapoly0030s0125 [PF08429] PLU-1-like protein; [GO:0003677] DNA binding; [GO:0055114] oxidation-reduction process; [KOG1246] DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF02373] JmjC domain, hydroxylase; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PTHR10694:SF8] RETINOBLASTOMA BINDING PROTEIN-RELATED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005634] nucleus; [GO:0005622] intracellular; [PF02375] jmjN domain; [PTHR10694] JUMONJI DOMAIN CONTAINING PROTEIN; [PF02928] C5HC2 zinc finger95.670.7065
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