Guide Gene
- Gene ID
- Mapoly0063s0095
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [PF00637] Region in Clathrin and VPS; [GO:0016192] vesicle-mediated transport; [PF12816] Golgi CORVET complex core vacuolar protein 8; [PTHR12816] RETINOBLASTOMA BINDING PROTEIN 5; [GO:0006886] intracellular protein transport
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0063s0095 [PF00637] Region in Clathrin and VPS; [GO:0016192] vesicle-mediated transport; [PF12816] Golgi CORVET complex core vacuolar protein 8; [PTHR12816] RETINOBLASTOMA BINDING PROTEIN 5; [GO:0006886] intracellular protein transport 0.00 1.0000 1 Mapoly0097s0070 [PTHR23102] ZINC FINGER (CLIPPER)-RELATED; [PTHR23102:SF13] ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN 3 4.47 0.8075 2 Mapoly0162s0017 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799:SF131] SWI/SNF CHROMATIN REMODELING COMPLEX COMPONENT; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF00855] PWWP domain; [PF00176] SNF2 family N-terminal domain; [PF06465] Domain of Unknown Function (DUF1087); [PF00271] Helicase conserved C-terminal domain; [KOG0383] Predicted helicase 5.57 0.8395 3 Mapoly0049s0060 [KOG1811] Predicted Zn2+-binding protein, contains FYVE domain 6.32 0.8271 4 Mapoly0005s0042 [PTHR32043] FAMILY NOT NAMED; [PF08774] VRR-NUC domain; [GO:0008270] zinc ion binding; [PF08797] HIRAN domain; [GO:0003676] nucleic acid binding; [GO:0016788] hydrolase activity, acting on ester bonds; [GO:0016818] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; [KOG2143] Uncharacterized conserved protein 7.35 0.7706 5 Mapoly0047s0097 [PF12710] haloacid dehalogenase-like hydrolase; [K01552] arsenite-transporting ATPase [EC:3.6.3.16]; [GO:0000166] nucleotide binding; [3.6.3.-] Acting on acid anhydrides; catalyzing transmembrane movement of substances.; [PTHR24093] FAMILY NOT NAMED; [GO:0046872] metal ion binding; [KOG0208] Cation transport ATPase; [PF00122] E1-E2 ATPase; [PTHR24093:SF84] CATION-TRANSPORTING P-TYPE ATPASE 11.22 0.7790 6 Mapoly0122s0007 [PF00072] Response regulator receiver domain; [PF06203] CCT motif; [GO:0000160] phosphorelay signal transduction system; [GO:0005515] protein binding; [K12129] pseudo-response regulator 7; [PTHR26402] RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM 12.37 0.7318 7 Mapoly0030s0125 [PF08429] PLU-1-like protein; [GO:0003677] DNA binding; [GO:0055114] oxidation-reduction process; [KOG1246] DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF02373] JmjC domain, hydroxylase; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PTHR10694:SF8] RETINOBLASTOMA BINDING PROTEIN-RELATED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005634] nucleus; [GO:0005622] intracellular; [PF02375] jmjN domain; [PTHR10694] JUMONJI DOMAIN CONTAINING PROTEIN; [PF02928] C5HC2 zinc finger 12.49 0.8203 8 Mapoly0096s0053 - 13.19 0.8057 9 Mapoly0002s0107 [KOG2177] Predicted E3 ubiquitin ligase 20.86 0.8061 10 Mapoly0001s0012 [PF10266] Hereditary spastic paraplegia protein strumpellin; [GO:0071203] WASH complex; [PTHR15691:SF6] PROTEIN KIAA0196; [KOG3666] Uncharacterized conserved protein; [PTHR15691] PROTEIN KIAA0196 22.98 0.7748 11 Mapoly0021s0014 [PF07719] Tetratricopeptide repeat; [PTHR15502] CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED; [PTHR15502:SF7] SUBFAMILY NOT NAMED 25.69 0.7914 12 Mapoly0075s0039 [PTHR21563] UNCHARACTERIZED; [PF10650] Putative zinc-finger domain 27.20 0.7777 13 Mapoly0019s0008 [GO:0003723] RNA binding; [PF10596] U6-snRNA interacting domain of PrP8; [PF08083] PROCN (NUC071) domain; [GO:0005515] protein binding; [GO:0005681] spliceosomal complex; [PTHR11140] PRE-MRNA SPLICING FACTOR PRP8; [PTHR11140:SF0] SUBFAMILY NOT NAMED; [PF01398] JAB1/Mov34/MPN/PAD-1 ubiquitin protease; [GO:0030623] U5 snRNA binding; [PF10597] U5-snRNA binding site 2 of PrP8; [KOG1795] U5 snRNP spliceosome subunit; [GO:0000398] mRNA splicing, via spliceosome; [PF12134] PRP8 domain IV core; [PF10598] RNA recognition motif of the spliceosomal PrP8; [K12856] pre-mRNA-processing factor 8; [GO:0017070] U6 snRNA binding; [PF08082] PRO8NT (NUC069), PrP8 N-terminal domain; [PF08084] PROCT (NUC072) domain 28.84 0.7818 14 Mapoly0003s0206 [KOG1082] Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing; [PF05033] Pre-SET motif; [GO:0005515] protein binding; [PF00856] SET domain; [GO:0008270] zinc ion binding; [GO:0018024] histone-lysine N-methyltransferase activity; [PTHR22884] SET DOMAIN PROTEINS; [GO:0005634] nucleus; [GO:0034968] histone lysine methylation; [PF13912] C2H2-type zinc finger 28.86 0.8043 15 Mapoly0005s0070 [PF05623] Protein of unknown function (DUF789); [PTHR32010] FAMILY NOT NAMED 30.00 0.7943 16 Mapoly0001s0041 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF00271] Helicase conserved C-terminal domain; [GO:0005515] protein binding; [KOG0386] Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily); [PF00439] Bromodomain; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain 31.24 0.7995 17 Mapoly0058s0081 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG0387] Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain); [PF00271] Helicase conserved C-terminal domain 31.32 0.7960 18 Mapoly0061s0046 [KOG0170] E3 ubiquitin protein ligase; [PTHR11254:SF73] HECT UBIQUITIN-PROTEIN LIGASE 3 (KAKTUS PROTEIN); [PTHR11254] HECT DOMAIN UBIQUITIN-PROTEIN LIGASE; [6.3.2.19] Ubiquitin--protein ligase.; [GO:0004842] ubiquitin-protein ligase activity; [K10590] E3 ubiquitin-protein ligase TRIP12 [EC:6.3.2.19]; [PF00632] HECT-domain (ubiquitin-transferase) 31.56 0.7894 19 Mapoly0038s0059 [GO:0003677] DNA binding; [PF13513] HEAT-like repeat; [GO:0005524] ATP binding; [GO:0005515] protein binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [PF00271] Helicase conserved C-terminal domain; [PF12054] Domain of unknown function (DUF3535); [PF02985] HEAT repeat; [KOG0392] SNF2 family DNA-dependent ATPase domain-containing protein; [PTHR10799:SF225] TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 34.87 0.7789 20 Mapoly0156s0022 [PTHR11226] UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE; [GO:0006486] protein glycosylation; [PF06427] UDP-glucose:Glycoprotein Glucosyltransferase; [K11718] UDP-glucose:glycoprotein glucosyltransferase [EC:2.4.1.-]; [GO:0003980] UDP-glucose:glycoprotein glucosyltransferase activity; [PTHR11226:SF0] SUBFAMILY NOT NAMED; [KOG1879] UDP-glucose:glycoprotein glucosyltransferase; [2.4.1.-] Hexosyltransferases. 36.37 0.7348 21 Mapoly0051s0028 [GO:0003723] RNA binding; [PTHR23253] EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA; [PF02854] MIF4G domain; [GO:0005515] protein binding; [PF02020] eIF4-gamma/eIF5/eIF2-epsilon; [KOG2992] Nucleolar GTPase/ATPase p130; [K03260] translation initiation factor eIF-4F; [PF02847] MA3 domain 37.82 0.7861 22 Mapoly0090s0059 [PF06012] Domain of Unknown Function (DUF908); [K10592] E3 ubiquitin-protein ligase HUWE1 [EC:6.3.2.19]; [PTHR11254] HECT DOMAIN UBIQUITIN-PROTEIN LIGASE; [GO:0005515] protein binding; [KOG0940] Ubiquitin protein ligase RSP5/NEDD4; [PF14377] Domain of unknown function (DUF4414); [PF06025] Domain of Unknown Function (DUF913); [6.3.2.19] Ubiquitin--protein ligase.; [PF00627] UBA/TS-N domain; [GO:0004842] ubiquitin-protein ligase activity; [PF00632] HECT-domain (ubiquitin-transferase) 38.24 0.7802 23 Mapoly0009s0010 [PTHR21677] CRAMPED PROTEIN 39.24 0.7681 24 Mapoly0029s0138 [PF00637] Region in Clathrin and VPS; [GO:0016192] vesicle-mediated transport; [PTHR12894:SF10] VAM6/VPS39 RELATED; [KOG2063] Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3; [PF10367] Vacuolar sorting protein 39 domain 2; [GO:0006886] intracellular protein transport; [PF00780] CNH domain; [GO:0005083] small GTPase regulator activity; [PTHR12894] CNH DOMAIN CONTAINING; [PF10366] Vacuolar sorting protein 39 domain 1 39.24 0.7492 25 Mapoly0139s0004 [PTHR23081] RNA POLYMERASE II CTD PHOSPHATASE; [KOG1605] TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation); [PF03031] NLI interacting factor-like phosphatase; [GO:0005515] protein binding; [PF00533] BRCA1 C Terminus (BRCT) domain 41.64 0.7534 26 Mapoly0176s0001 [PTHR13793] PHD FINGER PROTEINS; [PF10513] Enhancer of polycomb-like 41.71 0.7855 27 Mapoly0004s0129 [3.1.2.15] Ubiquitin thiolesterase.; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [PF12436] ICP0-binding domain of Ubiquitin-specific protease 7; [PF00917] MATH domain; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0005515] protein binding; [KOG1863] Ubiquitin carboxyl-terminal hydrolase; [PF14533] Ubiquitin-specific protease C-terminal; [PTHR24619] FAMILY NOT NAMED; [K11838] ubiquitin carboxyl-terminal hydrolase 7 [EC:3.1.2.15] 43.69 0.7760 28 Mapoly0029s0126 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF09416] RNA helicase (UPF2 interacting domain); [GO:0004386] helicase activity; [GO:0005737] cytoplasm; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [GO:0008270] zinc ion binding; [PF13086] AAA domain; [3.6.4.-] Acting on acid anhydrides; involved in cellular and subcellular movement.; [K14326] regulator of nonsense transcripts 1 [EC:3.6.4.-]; [GO:0000184] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; [PF13087] AAA domain 45.21 0.7858 29 Mapoly0032s0118 [PTHR22835] ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN; [GO:0046872] metal ion binding; [PF01363] FYVE zinc finger 45.37 0.7399 30 Mapoly0087s0031 [GO:0016791] phosphatase activity; [PTHR10807] MYOTUBULARIN-RELATED; [GO:0016311] dephosphorylation; [KOG4471] Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1; [PF06602] Myotubularin-like phosphatase domain 45.44 0.5739 31 Mapoly0014s0139 - 45.50 0.6782 32 Mapoly0001s0157 [K10601] E3 ubiquitin-protein ligase synoviolin [EC:6.3.2.19]; [KOG1493] Anaphase-promoting complex (APC), subunit 11; [PTHR12477] SYNOVIOLIN-RELATED; [GO:0005515] protein binding; [PF13639] Ring finger domain; [GO:0008270] zinc ion binding; [6.3.2.19] Ubiquitin--protein ligase. 46.31 0.6747 33 Mapoly0012s0015 [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED 46.62 0.7403 34 Mapoly0101s0045 [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [GO:0005515] protein binding; [K08873] PI-3-kinase-related kinase SMG-1; [PF00454] Phosphatidylinositol 3- and 4-kinase; [PF02260] FATC domain; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED 47.01 0.7734 35 Mapoly0002s0195 [PTHR15180] GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1; [PF04182] B-block binding subunit of TFIIIC 49.94 0.7671 36 Mapoly0069s0061 [GO:0004677] DNA-dependent protein kinase activity; [GO:0003677] DNA binding; [GO:0005524] ATP binding; [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [PF02259] FAT domain; [GO:0005515] protein binding; [K06642] DNA-dependent protein kinase catalytic subunit [EC:2.7.11.1]; [PF08163] NUC194 domain; [2.7.11.1] Non-specific serine/threonine protein kinase.; [GO:0005634] nucleus; [PF00454] Phosphatidylinositol 3- and 4-kinase; [PF02260] FATC domain; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED; [GO:0006303] double-strand break repair via nonhomologous end joining 52.38 0.7293 37 Mapoly0014s0099 [PTHR22100] FAMILY NOT NAMED; [PF07814] Wings apart-like protein regulation of heterochromatin 52.45 0.7771 38 Mapoly0061s0049 - 54.84 0.7656 39 Mapoly0046s0099 [GO:0005524] ATP binding; [PF02889] Sec63 Brl domain; [PTHR11752] HELICASE SKI2W; [PTHR11752:SF8] ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3, HELC1; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [KOG0952] DNA/RNA helicase MER3/SLH1, DEAD-box superfamily; [GO:0003676] nucleic acid binding; [K01529] dynamin GTPase [EC:3.6.5.5]; [3.6.1.-] In phosphorous-containing anhydrides. 57.17 0.7393 40 Mapoly0179s0009 [KOG0978] E3 ubiquitin ligase involved in syntaxin degradation; [GO:0005515] protein binding; [PF01465] GRIP domain; [GO:0000042] protein targeting to Golgi 57.91 0.7156 41 Mapoly0101s0033 [PTHR21663] HYPOTHETICAL HEAT DOMAIN-CONTAINING; [KOG1822] Uncharacterized conserved protein; [PTHR21663:SF0] SUBFAMILY NOT NAMED 58.80 0.7453 42 Mapoly0007s0204 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [PF01424] R3H domain; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold; [PF12796] Ankyrin repeats (3 copies) 60.55 0.7365 43 Mapoly0005s0280 [PF01803] LIM-domain binding protein 60.75 0.7382 44 Mapoly0021s0105 [GO:0005515] protein binding; [PF00856] SET domain; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [PTHR22884] SET DOMAIN PROTEINS; [GO:0003676] nucleic acid binding 60.75 0.7670 45 Mapoly0057s0099 [KOG4817] Unnamed protein 61.16 0.7761 46 Mapoly0072s0083 [PTHR13808] CBP/P300-RELATED; [GO:0006355] regulation of transcription, DNA-dependent; [PF00569] Zinc finger, ZZ type; [PF02135] TAZ zinc finger; [GO:0003712] transcription cofactor activity; [GO:0008270] zinc ion binding; [PF08214] Histone acetylation protein; [GO:0005634] nucleus; [GO:0004402] histone acetyltransferase activity; [K04498] E1A/CREB-binding protein [EC:2.3.1.48]; [2.3.1.48] Histone acetyltransferase.; [KOG1778] CREB binding protein/P300 and related TAZ Zn-finger proteins 62.05 0.7742 47 Mapoly0129s0012 [GO:0003677] DNA binding; [K10885] ATP-dependent DNA helicase 2 subunit 2; [PTHR12604:SF3] KU P80 DNA HELICASE; [GO:0042162] telomeric DNA binding; [GO:0016817] hydrolase activity, acting on acid anhydrides; [PF03730] Ku70/Ku80 C-terminal arm; [PF02735] Ku70/Ku80 beta-barrel domain; [PF03731] Ku70/Ku80 N-terminal alpha/beta domain; [GO:0043564] Ku70:Ku80 complex; [GO:0005634] nucleus; [KOG2326] DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen); [PF08785] Ku C terminal domain like; [GO:0004003] ATP-dependent DNA helicase activity; [PTHR12604] KU AUTOANTIGEN DNA HELICASE; [GO:0003684] damaged DNA binding; [GO:0006303] double-strand break repair via nonhomologous end joining; [GO:0006310] DNA recombination; [GO:0000723] telomere maintenance 63.06 0.6757 48 Mapoly0038s0063 [GO:0030904] retromer complex; [GO:0015031] protein transport; [PF03635] Vacuolar protein sorting-associated protein 35; [GO:0042147] retrograde transport, endosome to Golgi; [PTHR13673:SF0] SUBFAMILY NOT NAMED; [PTHR13673] ESOPHAGEAL CANCER ASSOCIATED PROTEIN; [KOG3682] Predicted membrane protein (associated with esophageal cancer in humans) 63.99 0.7228 49 Mapoly0030s0152 [PTHR12820:SF0] SUBFAMILY NOT NAMED; [KOG2180] Late Golgi protein sorting complex, subunit Vps53; [PTHR12820] VACUOLAR SORTING PROTEIN 53; [PF04100] Vps53-like, N-terminal 65.06 0.7091 50 Mapoly0088s0076 [PTHR11254] HECT DOMAIN UBIQUITIN-PROTEIN LIGASE; [GO:0004842] ubiquitin-protein ligase activity; [KOG4427] E3 ubiquitin protein ligase; [PF00632] HECT-domain (ubiquitin-transferase) 71.65 0.6702