Guide Gene

Gene ID
Mapoly0097s0070
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR23102] ZINC FINGER (CLIPPER)-RELATED; [PTHR23102:SF13] ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN 3

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0097s0070 [PTHR23102] ZINC FINGER (CLIPPER)-RELATED; [PTHR23102:SF13] ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN 3 0.00 1.0000
1 Mapoly0012s0015 [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED1.730.8196
2 Mapoly0032s0118 [PTHR22835] ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN; [GO:0046872] metal ion binding; [PF01363] FYVE zinc finger2.000.8317
3 Mapoly0049s0060 [KOG1811] Predicted Zn2+-binding protein, contains FYVE domain4.360.8321
4 Mapoly0063s0095 [PF00637] Region in Clathrin and VPS; [GO:0016192] vesicle-mediated transport; [PF12816] Golgi CORVET complex core vacuolar protein 8; [PTHR12816] RETINOBLASTOMA BINDING PROTEIN 5; [GO:0006886] intracellular protein transport4.470.8075
5 Mapoly0075s0039 [PTHR21563] UNCHARACTERIZED; [PF10650] Putative zinc-finger domain8.250.8091
6 Mapoly0001s0480 [PF00249] Myb-like DNA-binding domain; [PTHR13992] NUCLEAR RECEPTOR CO-REPRESSOR RELATED (NCOR); [GO:0003682] chromatin binding; [PTHR13992:SF7] GB DEF: ZGC:56355 PROTEIN; [KOG3227] Calcium-responsive transcription coactivator10.910.7566
7 Mapoly0005s0042 [PTHR32043] FAMILY NOT NAMED; [PF08774] VRR-NUC domain; [GO:0008270] zinc ion binding; [PF08797] HIRAN domain; [GO:0003676] nucleic acid binding; [GO:0016788] hydrolase activity, acting on ester bonds; [GO:0016818] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; [KOG2143] Uncharacterized conserved protein12.850.7278
8 Mapoly0101s0045 [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [GO:0005515] protein binding; [K08873] PI-3-kinase-related kinase SMG-1; [PF00454] Phosphatidylinositol 3- and 4-kinase; [PF02260] FATC domain; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED19.750.7961
9 Mapoly0005s0280 [PF01803] LIM-domain binding protein22.250.7651
10 Mapoly0061s0046 [KOG0170] E3 ubiquitin protein ligase; [PTHR11254:SF73] HECT UBIQUITIN-PROTEIN LIGASE 3 (KAKTUS PROTEIN); [PTHR11254] HECT DOMAIN UBIQUITIN-PROTEIN LIGASE; [6.3.2.19] Ubiquitin--protein ligase.; [GO:0004842] ubiquitin-protein ligase activity; [K10590] E3 ubiquitin-protein ligase TRIP12 [EC:6.3.2.19]; [PF00632] HECT-domain (ubiquitin-transferase)25.790.7808
11 Mapoly0001s0542 [KOG0266] WD40 repeat-containing protein; [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [PF02138] Beige/BEACH domain; [PF13385] Concanavalin A-like lectin/glucanases superfamily; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat26.830.7634
12 Mapoly0068s0098 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED27.930.6331
13 Mapoly0162s0017 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799:SF131] SWI/SNF CHROMATIN REMODELING COMPLEX COMPONENT; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF00855] PWWP domain; [PF00176] SNF2 family N-terminal domain; [PF06465] Domain of Unknown Function (DUF1087); [PF00271] Helicase conserved C-terminal domain; [KOG0383] Predicted helicase29.260.7770
14 Mapoly0090s0059 [PF06012] Domain of Unknown Function (DUF908); [K10592] E3 ubiquitin-protein ligase HUWE1 [EC:6.3.2.19]; [PTHR11254] HECT DOMAIN UBIQUITIN-PROTEIN LIGASE; [GO:0005515] protein binding; [KOG0940] Ubiquitin protein ligase RSP5/NEDD4; [PF14377] Domain of unknown function (DUF4414); [PF06025] Domain of Unknown Function (DUF913); [6.3.2.19] Ubiquitin--protein ligase.; [PF00627] UBA/TS-N domain; [GO:0004842] ubiquitin-protein ligase activity; [PF00632] HECT-domain (ubiquitin-transferase)29.390.7723
15 Mapoly0085s0070 [GO:0016567] protein ubiquitination; [GO:0005515] protein binding; [KOG0279] G protein beta subunit-like protein; [PTHR22844] F-BOX AND WD40 DOMAIN PROTEIN; [GO:0004842] ubiquitin-protein ligase activity; [PF04564] U-box domain; [PF00400] WD domain, G-beta repeat31.300.7311
16 Mapoly0101s0033 [PTHR21663] HYPOTHETICAL HEAT DOMAIN-CONTAINING; [KOG1822] Uncharacterized conserved protein; [PTHR21663:SF0] SUBFAMILY NOT NAMED32.250.7601
17 Mapoly0043s0067 [GO:0005524] ATP binding; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [KOG0334] RNA helicase; [K12811] ATP-dependent RNA helicase DDX46/PRP5 [EC:3.6.4.13]; [PTHR24031:SF25] SUBFAMILY NOT NAMED33.470.7588
18 Mapoly0021s0105 [GO:0005515] protein binding; [PF00856] SET domain; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [PTHR22884] SET DOMAIN PROTEINS; [GO:0003676] nucleic acid binding34.790.7710
19 Mapoly0177s0011 [GO:0006289] nucleotide-excision repair; [PF00867] XPG I-region; [PF00752] XPG N-terminal domain; [GO:0003697] single-stranded DNA binding; [K10846] DNA excision repair protein ERCC-5; [GO:0005634] nucleus; [PTHR11081:SF1] DNA-REPAIR PROTEIN XP-G; [GO:0006281] DNA repair; [GO:0004518] nuclease activity; [PTHR11081] XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY; [GO:0004519] endonuclease activity35.000.7368
20 Mapoly0079s0057 [PF03828] Cid1 family poly A polymerase; [PTHR12271] POLY(A) POLYMERASE CID (PAP)-RELATED35.940.7233
21 Mapoly0043s0138 [PTHR24078:SF25] DNAJ HOMOLOG SUBFAMILY C MEMBER 13; [PF00226] DnaJ domain; [PF14237] Domain of unknown function (DUF4339); [KOG1789] Endocytosis protein RME-8, contains DnaJ domain; [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER36.660.7509
22 Mapoly0001s0255 [PTHR13258] UNCHARACTERIZED; [PTHR13258:SF0] SUBFAMILY NOT NAMED; [KOG2939] Uncharacterized conserved protein; [PF10475] Protein of unknown function N-terminal domain (DUF2450); [PF10474] Protein of unknown function C-terminus (DUF2451)37.760.7501
23 Mapoly0021s0054 [GO:0005097] Rab GTPase activator activity; [PF03909] BSD domain; [PF13890] Rab3 GTPase-activating protein catalytic subunit; [PTHR21422] FAMILY NOT NAMED38.860.6378
24 Mapoly0002s0158 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [KOG1240] Protein kinase containing WD40 repeats; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [GO:0006468] protein phosphorylation; [PF02985] HEAT repeat; [PTHR17583] PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4; [K08333] phosphoinositide-3-kinase, regulatory subunit 4, p150 [EC:2.7.11.1]; [PF00400] WD domain, G-beta repeat40.420.6814
25 Mapoly0155s0018 [PTHR10795:SF30] MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-1 PROTEASE; [GO:0004252] serine-type endopeptidase activity; [3.4.21.112] Site-1 protease.; [PF00082] Subtilase family; [GO:0006508] proteolysis; [K08653] membrane-bound transcription factor site-1 protease [EC:3.4.21.112]; [KOG4266] Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily; [PTHR10795] PROPROTEIN CONVERTASE SUBTILISIN/KEXIN43.570.6397
26 Mapoly0023s0171 [GO:0016021] integral to membrane; [GO:0008381] mechanically-gated ion channel activity; [PTHR13167] UNCHARACTERIZED; [PF12166] Protein of unknown function (DUF3595); [PTHR13167:SF25] PREDICTED: SIMILAR TO MIB43.750.7303
27 Mapoly0069s0061 [GO:0004677] DNA-dependent protein kinase activity; [GO:0003677] DNA binding; [GO:0005524] ATP binding; [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [PF02259] FAT domain; [GO:0005515] protein binding; [K06642] DNA-dependent protein kinase catalytic subunit [EC:2.7.11.1]; [PF08163] NUC194 domain; [2.7.11.1] Non-specific serine/threonine protein kinase.; [GO:0005634] nucleus; [PF00454] Phosphatidylinositol 3- and 4-kinase; [PF02260] FATC domain; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED; [GO:0006303] double-strand break repair via nonhomologous end joining44.090.7251
28 Mapoly0047s0097 [PF12710] haloacid dehalogenase-like hydrolase; [K01552] arsenite-transporting ATPase [EC:3.6.3.16]; [GO:0000166] nucleotide binding; [3.6.3.-] Acting on acid anhydrides; catalyzing transmembrane movement of substances.; [PTHR24093] FAMILY NOT NAMED; [GO:0046872] metal ion binding; [KOG0208] Cation transport ATPase; [PF00122] E1-E2 ATPase; [PTHR24093:SF84] CATION-TRANSPORTING P-TYPE ATPASE45.370.7176
29 Mapoly0005s0166 [PTHR31413] FAMILY NOT NAMED; [PF07897] Protein of unknown function (DUF1675)45.960.6791
30 Mapoly0082s0083 [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [KOG1788] Uncharacterized conserved protein; [PF02138] Beige/BEACH domain; [PF13385] Concanavalin A-like lectin/glucanases superfamily; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat48.250.7483
31 Mapoly0006s0048 [GO:0005515] protein binding; [PF12490] Breast carcinoma amplified sequence 3; [PTHR13268:SF0] SUBFAMILY NOT NAMED; [PTHR13268] BREAST CARCINOMA AMPLIFIED SEQUENCE 3; [KOG2109] WD40 repeat protein; [PF00400] WD domain, G-beta repeat49.480.6924
32 Mapoly0053s0062 [PF12739] ER-Golgi trafficking TRAPP I complex 85 kDa subunit; [PTHR12975] TRANSPORT PROTEIN (TRAPP); [PTHR12975:SF6] SUBFAMILY NOT NAMED; [KOG1938] Protein with predicted involvement in meiosis (GSG1)50.600.7196
33 Mapoly0047s0098 [PF12710] haloacid dehalogenase-like hydrolase; [K01552] arsenite-transporting ATPase [EC:3.6.3.16]; [GO:0000166] nucleotide binding; [3.6.3.-] Acting on acid anhydrides; catalyzing transmembrane movement of substances.; [PTHR24093] FAMILY NOT NAMED; [GO:0046872] metal ion binding; [KOG0208] Cation transport ATPase; [PF00122] E1-E2 ATPase; [PTHR24093:SF84] CATION-TRANSPORTING P-TYPE ATPASE51.000.5664
34 Mapoly0005s0070 [PF05623] Protein of unknown function (DUF789); [PTHR32010] FAMILY NOT NAMED51.580.7543
35 Mapoly0088s0047 [PF05773] RWD domain; [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [K08282] non-specific serine/threonine protein kinase [EC:2.7.11.1]; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [KOG1035] eIF-2alpha kinase GCN2; [2.7.11.1] Non-specific serine/threonine protein kinase.; [PF12745] Anticodon binding domain of tRNAs; [GO:0006468] protein phosphorylation; [PTHR11042:SF38] SUBFAMILY NOT NAMED; [PTHR11042] EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE (EIF2-ALPHA KINASE)-RELATED; [PF13393] Histidyl-tRNA synthetase51.770.6938
36 Mapoly0001s0118 [GO:0005515] protein binding; [PF00856] SET domain; [PTHR22884] SET DOMAIN PROTEINS51.820.7581
37 Mapoly0002s0107 [KOG2177] Predicted E3 ubiquitin ligase54.170.7564
38 Mapoly0113s0018 -54.260.7119
39 Mapoly0067s0058 [GO:0008270] zinc ion binding; [PTHR23336] ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.; [PF07496] CW-type Zinc Finger55.430.7571
40 Mapoly0118s0042 [PTHR15454:SF7] SUBFAMILY NOT NAMED; [PTHR15454] NISCHARIN RELATED56.870.6673
41 Mapoly0002s0195 [PTHR15180] GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1; [PF04182] B-block binding subunit of TFIIIC57.460.7366
42 Mapoly0122s0007 [PF00072] Response regulator receiver domain; [PF06203] CCT motif; [GO:0000160] phosphorelay signal transduction system; [GO:0005515] protein binding; [K12129] pseudo-response regulator 7; [PTHR26402] RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM60.120.6439
43 Mapoly0047s0113 -60.330.7072
44 Mapoly0038s0067 [PF09333] ATG C terminal domain; [GO:0006914] autophagy; [PTHR13190] FAMILY NOT NAMED; [PF12624] N-terminal region of Chorein, a TM vesicle-mediated sorter60.600.6888
45 Mapoly0010s0177 [PF09247] TATA box-binding protein binding; [PTHR13900:SF0] SUBFAMILY NOT NAMED; [PF15288] Zinc knuckle; [GO:0005515] protein binding; [PF00439] Bromodomain; [K03125] transcription initiation factor TFIID subunit 1; [PF12157] Protein of unknown function (DUF3591); [PTHR13900] TRANSCRIPTION INITIATION FACTOR TFIID; [PF00240] Ubiquitin family; [KOG0008] Transcription initiation factor TFIID, subunit TAF161.690.7502
46 Mapoly0066s0021 [KOG1884] Uncharacterized conserved protein; [PF14649] Spatacsin C-terminus; [PTHR13650] UNCHARACTERIZED61.730.7233
47 Mapoly0010s0103 -62.900.6760
48 Mapoly0001s0041 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF00271] Helicase conserved C-terminal domain; [GO:0005515] protein binding; [KOG0386] Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily); [PF00439] Bromodomain; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain63.250.7537
49 Mapoly0105s0039 [PF06101] Plant protein of unknown function (DUF946); [PF06650] Protein of unknown function (DUF1162); [PF06398] Integral peroxisomal membrane peroxin; [PTHR16166] VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN (VPS13); [PF12624] N-terminal region of Chorein, a TM vesicle-mediated sorter; [PTHR16166:SF61] PUTATIVE UNCHARACTERIZED PROTEIN64.540.6835
50 Mapoly0088s0014 [PF00628] PHD-finger; [GO:0005515] protein binding65.190.7268
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