Guide Gene

Gene ID
Mapoly0058s0081
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG0387] Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain); [PF00271] Helicase conserved C-terminal domain

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0058s0081 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG0387] Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain); [PF00271] Helicase conserved C-terminal domain 0.00 1.0000
1 Mapoly0055s0059 [GO:0000124] SAGA complex; [GO:0003712] transcription cofactor activity; [PF12090] Spt20 family; [PTHR13526] P38 INTERACTING PROTEIN1.410.9174
2 Mapoly0002s0268 [PF07719] Tetratricopeptide repeat; [KOG1127] TPR repeat-containing protein; [PTHR15704] SUPERKILLER 3 PROTEIN-RELATED; [GO:0005515] protein binding; [K12600] superkiller protein 3; [PF13414] TPR repeat; [PF13181] Tetratricopeptide repeat; [PF13174] Tetratricopeptide repeat; [PF00515] Tetratricopeptide repeat2.240.8923
3 Mapoly0096s0053 -2.450.8893
4 Mapoly0033s0119 [PTHR22715:SF0] SUBFAMILY NOT NAMED; [PF05964] F/Y-rich N-terminus; [GO:0005634] nucleus; [PF05965] F/Y rich C-terminus; [PTHR22715] TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 14.800.8654
5 Mapoly0007s0204 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [PF01424] R3H domain; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold; [PF12796] Ankyrin repeats (3 copies)5.740.8534
6 Mapoly0091s0046 [PF05641] Agenet domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR24098] FAMILY NOT NAMED6.000.8956
7 Mapoly0019s0132 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [PTHR13832] PROTEIN PHOSPHATASE 2C; [PF00481] Protein phosphatase 2C; [GO:0006468] protein phosphorylation; [GO:0003824] catalytic activity; [KOG0594] Protein kinase PCTAIRE and related kinases6.400.8483
8 Mapoly0187s0019 [PF00855] PWWP domain; [PF12243] CTD kinase subunit gamma CTK3; [PTHR12550] HEPATOMA-DERIVED GROWTH FACTOR-RELATED; [KOG2669] Regulator of nuclear mRNA6.930.8946
9 Mapoly0043s0055 [PTHR31115] FAMILY NOT NAMED; [PF10198] Histone acetyltransferases subunit 37.480.8938
10 Mapoly0030s0125 [PF08429] PLU-1-like protein; [GO:0003677] DNA binding; [GO:0055114] oxidation-reduction process; [KOG1246] DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF02373] JmjC domain, hydroxylase; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PTHR10694:SF8] RETINOBLASTOMA BINDING PROTEIN-RELATED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005634] nucleus; [GO:0005622] intracellular; [PF02375] jmjN domain; [PTHR10694] JUMONJI DOMAIN CONTAINING PROTEIN; [PF02928] C5HC2 zinc finger8.000.8837
11 Mapoly0014s0099 [PTHR22100] FAMILY NOT NAMED; [PF07814] Wings apart-like protein regulation of heterochromatin8.770.8850
12 Mapoly0043s0095 [PTHR21717:SF12] PROTEIN LCHN [SOURCE:UNIPROTKB/SWISS-PROT,ACC:Q1LX49]; [PTHR21717] TELOMERIC REPEAT BINDING PROTEIN10.100.8337
13 Mapoly0105s0061 [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)10.490.8810
14 Mapoly0011s0138 [PF12717] non-SMC mitotic condensation complex subunit 1; [K13141] integrator complex subunit 4; [PTHR20938] UNCHARACTERIZED; [PTHR20938:SF0] SUBFAMILY NOT NAMED11.960.8798
15 Mapoly0021s0014 [PF07719] Tetratricopeptide repeat; [PTHR15502] CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED; [PTHR15502:SF7] SUBFAMILY NOT NAMED12.040.8603
16 Mapoly0043s0041 [PTHR21737] POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3; [K12865] polyglutamine-binding protein 1; [PF00397] WW domain; [GO:0005515] protein binding; [PTHR21737:SF3] POLYGLUTAMINE BINDING PROTEIN 112.490.8627
17 Mapoly0006s0231 [KOG0123] Polyadenylate-binding protein (RRM superfamily); [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF07744] SPOC domain; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)14.420.8778
18 Mapoly0085s0079 [PF01426] BAH domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PTHR12505] PHD FINGER TRANSCRIPTION FACTOR15.590.8612
19 Mapoly0121s0050 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12547] CCCH ZINC FINGER/TIS11-RELATED; [GO:0046872] metal ion binding16.060.7819
20 Mapoly0057s0099 [KOG4817] Unnamed protein16.160.8833
21 Mapoly0030s0052 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR11909] CASEIN KINASE-RELATED; [KOG1164] Casein kinase (serine/threonine/tyrosine protein kinase)17.000.8733
22 Mapoly0006s0121 -17.320.8001
23 Mapoly0090s0049 [PF13831] PHD-finger; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF13832] PHD-zinc-finger like domain; [PF00856] SET domain; [KOG1080] Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases; [PTHR13793] PHD FINGER PROTEINS; [PF00855] PWWP domain; [PTHR13793:SF5] TRITHORAX17.550.8411
24 Mapoly0029s0126 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF09416] RNA helicase (UPF2 interacting domain); [GO:0004386] helicase activity; [GO:0005737] cytoplasm; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [GO:0008270] zinc ion binding; [PF13086] AAA domain; [3.6.4.-] Acting on acid anhydrides; involved in cellular and subcellular movement.; [K14326] regulator of nonsense transcripts 1 [EC:3.6.4.-]; [GO:0000184] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; [PF13087] AAA domain17.750.8758
25 Mapoly0033s0111 [PTHR13587] FAMILY NOT NAMED; [K13140] integrator complex subunit 3; [PF10189] Conserved protein (DUF2356); [KOG4262] Uncharacterized conserved protein17.890.8484
26 Mapoly0003s0206 [KOG1082] Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing; [PF05033] Pre-SET motif; [GO:0005515] protein binding; [PF00856] SET domain; [GO:0008270] zinc ion binding; [GO:0018024] histone-lysine N-methyltransferase activity; [PTHR22884] SET DOMAIN PROTEINS; [GO:0005634] nucleus; [GO:0034968] histone lysine methylation; [PF13912] C2H2-type zinc finger18.970.8790
27 Mapoly0079s0055 [PTHR15496] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF12660] Putative zinc-finger of transcription factor IIIC complex; [PTHR15496:SF1] SUBFAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat; [PF12657] Transcription factor IIIC subunit delta N-term18.970.8521
28 Mapoly0202s0011 [GO:0003723] RNA binding; [PF02854] MIF4G domain; [GO:0005515] protein binding; [PTHR12839] NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 (UP-FRAMESHIFT SUPPRESSOR 2); [K14327] regulator of nonsense transcripts 2; [PF04050] Up-frameshift suppressor 2; [KOG2051] Nonsense-mediated mRNA decay 2 protein19.440.8317
29 Mapoly0001s0012 [PF10266] Hereditary spastic paraplegia protein strumpellin; [GO:0071203] WASH complex; [PTHR15691:SF6] PROTEIN KIAA0196; [KOG3666] Uncharacterized conserved protein; [PTHR15691] PROTEIN KIAA019619.750.8142
30 Mapoly0013s0145 [PF00249] Myb-like DNA-binding domain; [GO:0017053] transcriptional repressor complex; [GO:0003682] chromatin binding; [GO:0006351] transcription, DNA-dependent; [PTHR21689] LIN-9; [PF06584] DIRP; [GO:0007049] cell cycle19.750.8490
31 Mapoly0028s0080 [GO:0005515] protein binding; [PTHR16266] WD REPEAT DOMAIN 9; [PF00439] Bromodomain; [KOG0644] Uncharacterized conserved protein, contains WD40 repeat and BROMO domains; [PF00400] WD domain, G-beta repeat20.070.8574
32 Mapoly0059s0106 [GO:0003677] DNA binding; [PF12937] F-box-like; [GO:0005524] ATP binding; [GO:0005515] protein binding; [GO:0008270] zinc ion binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG1001] Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily; [PF07496] CW-type Zinc Finger20.350.8390
33 Mapoly0013s0178 [PF07719] Tetratricopeptide repeat; [GO:0005515] protein binding; [PF13414] TPR repeat; [PF00515] Tetratricopeptide repeat; [PTHR23083] TETRATRICOPEPTIDE REPEAT PROTEIN, TPR20.490.8104
34 Mapoly0061s0049 -20.740.8413
35 Mapoly0001s0118 [GO:0005515] protein binding; [PF00856] SET domain; [PTHR22884] SET DOMAIN PROTEINS20.780.8753
36 Mapoly0057s0069 [PTHR14571] UNCHARACTERIZED20.830.8769
37 Mapoly0154s0047 [PTHR12360] NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1); [KOG1952] Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains; [PTHR12360:SF1] NF-X1-TYPE ZINC FINGER PROTEIN NFXL121.730.8246
38 Mapoly0067s0058 [GO:0008270] zinc ion binding; [PTHR23336] ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.; [PF07496] CW-type Zinc Finger21.790.8696
39 Mapoly0002s0107 [KOG2177] Predicted E3 ubiquitin ligase22.910.8656
40 Mapoly0060s0062 [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10782] ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN; [GO:0008270] zinc ion binding; [PF02891] MIZ/SP-RING zinc finger; [GO:0003676] nucleic acid binding; [PF02037] SAP domain23.980.8643
41 Mapoly0005s0162 [GO:0008168] methyltransferase activity; [PTHR13107] KARYOGAMY PROTEIN KAR4-RELATED; [PF05063] MT-A70; [KOG2097] Predicted N6-adenine methylase involved in transcription regulation; [GO:0006139] nucleobase-containing compound metabolic process; [PTHR13107:SF0] SUBFAMILY NOT NAMED24.000.8701
42 Mapoly0005s0227 [PF01663] Type I phosphodiesterase / nucleotide pyrophosphatase; [GO:0003824] catalytic activity; [KOG2125] Glycosylphosphatidylinositol anchor synthesis protein; [2.7.-.-] Transferring phosphorous-containing groups.; [K05310] ethanolaminephosphotransferase [EC:2.7.-.-]; [PTHR23072:SF0] SUBFAMILY NOT NAMED; [PTHR23072] PHOSPHATIDYLINOSITOL GLYCAN-RELATED24.060.7498
43 Mapoly0035s0121 [PF11935] Domain of unknown function (DUF3453); [K06100] symplekin; [KOG1895] mRNA cleavage and polyadenylation factor II complex, subunit PTA1; [PF12295] Symplekin tight junction protein C terminal; [PTHR15245] SYMPLEKIN-RELATED25.920.8645
44 Mapoly0001s0017 [PTHR11618:SF4] TRANSCRIPTION FACTOR IIIB; [GO:0006355] regulation of transcription, DNA-dependent; [PF00382] Transcription factor TFIIB repeat; [GO:0006352] DNA-dependent transcription, initiation; [PTHR11618] TRANSCRIPTION INITIATION FACTOR IIB-RELATED; [GO:0000126] transcription factor TFIIIB complex; [PF07741] Brf1-like TBP-binding domain; [GO:0008270] zinc ion binding; [GO:0017025] TBP-class protein binding; [GO:0006384] transcription initiation from RNA polymerase III promoter; [KOG1598] Transcription initiation factor TFIIIB, Brf1 subunit26.460.8346
45 Mapoly0005s0060 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K11367] chromodomain-helicase-DNA-binding protein 1 [EC:3.6.4.12]; [PF13907] Domain of unknown function (DUF4208); [PTHR10799:SF70] CHROMODOMAIN HELICASE DNA BINDING PROTEIN; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [KOG0384] Chromodomain-helicase DNA-binding protein26.460.8606
46 Mapoly0061s0023 [PF13465] Zinc-finger double domain; [PF00096] Zinc finger, C2H2 type; [PTHR24409] FAMILY NOT NAMED; [GO:0046872] metal ion binding; [PF13894] C2H2-type zinc finger27.750.8147
47 Mapoly0032s0010 -27.930.8658
48 Mapoly0054s0071 -28.350.8191
49 Mapoly0005s0159 [GO:0003677] DNA binding; [KOG0484] Transcription factor PHOX2/ARIX, contains HOX domain; [GO:0006355] regulation of transcription, DNA-dependent; [PF00046] Homeobox domain; [PF05066] HB1, ASXL, restriction endonuclease HTH domain; [PTHR24326] FAMILY NOT NAMED; [PF02791] DDT domain; [GO:0006351] transcription, DNA-dependent; [PF15612] WSTF, HB1, Itc1p, MBD9 motif 129.560.8517
50 Mapoly0009s0010 [PTHR21677] CRAMPED PROTEIN29.600.8172
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