Guide Gene
- Gene ID
- Mapoly0033s0119
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [PTHR22715:SF0] SUBFAMILY NOT NAMED; [PF05964] F/Y-rich N-terminus; [GO:0005634] nucleus; [PF05965] F/Y rich C-terminus; [PTHR22715] TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0033s0119 [PTHR22715:SF0] SUBFAMILY NOT NAMED; [PF05964] F/Y-rich N-terminus; [GO:0005634] nucleus; [PF05965] F/Y rich C-terminus; [PTHR22715] TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 0.00 1.0000 1 Mapoly0013s0178 [PF07719] Tetratricopeptide repeat; [GO:0005515] protein binding; [PF13414] TPR repeat; [PF00515] Tetratricopeptide repeat; [PTHR23083] TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 1.41 0.8610 2 Mapoly0096s0053 - 4.24 0.8423 3 Mapoly0058s0081 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG0387] Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain); [PF00271] Helicase conserved C-terminal domain 4.80 0.8654 4 Mapoly0202s0011 [GO:0003723] RNA binding; [PF02854] MIF4G domain; [GO:0005515] protein binding; [PTHR12839] NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 (UP-FRAMESHIFT SUPPRESSOR 2); [K14327] regulator of nonsense transcripts 2; [PF04050] Up-frameshift suppressor 2; [KOG2051] Nonsense-mediated mRNA decay 2 protein 6.00 0.8322 5 Mapoly0154s0047 [PTHR12360] NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1); [KOG1952] Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains; [PTHR12360:SF1] NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 7.35 0.8267 6 Mapoly0043s0041 [PTHR21737] POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3; [K12865] polyglutamine-binding protein 1; [PF00397] WW domain; [GO:0005515] protein binding; [PTHR21737:SF3] POLYGLUTAMINE BINDING PROTEIN 1 8.25 0.8396 7 Mapoly0009s0158 - 11.40 0.8126 8 Mapoly0113s0019 [KOG2354] RNA Polymerase C (III) 37 kDa subunit; [GO:0005634] nucleus; [PTHR12069] DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE (RNA POLYMERASE III SUBUNIT 5); [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF04801] Sin-like protein conserved region 13.04 0.8021 9 Mapoly0079s0042 [GO:0003723] RNA binding; [KOG2202] U2 snRNP splicing factor, small subunit, and related proteins; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12620] U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT; [GO:0005634] nucleus; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [GO:0046872] metal ion binding 15.87 0.7975 10 Mapoly0105s0061 [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16.43 0.8336 11 Mapoly0002s0268 [PF07719] Tetratricopeptide repeat; [KOG1127] TPR repeat-containing protein; [PTHR15704] SUPERKILLER 3 PROTEIN-RELATED; [GO:0005515] protein binding; [K12600] superkiller protein 3; [PF13414] TPR repeat; [PF13181] Tetratricopeptide repeat; [PF13174] Tetratricopeptide repeat; [PF00515] Tetratricopeptide repeat 17.66 0.8283 12 Mapoly0151s0022 [PTHR18460] UNCHARACTERIZED 18.49 0.7515 13 Mapoly0013s0145 [PF00249] Myb-like DNA-binding domain; [GO:0017053] transcriptional repressor complex; [GO:0003682] chromatin binding; [GO:0006351] transcription, DNA-dependent; [PTHR21689] LIN-9; [PF06584] DIRP; [GO:0007049] cell cycle 18.97 0.8167 14 Mapoly0001s0012 [PF10266] Hereditary spastic paraplegia protein strumpellin; [GO:0071203] WASH complex; [PTHR15691:SF6] PROTEIN KIAA0196; [KOG3666] Uncharacterized conserved protein; [PTHR15691] PROTEIN KIAA0196 19.60 0.7848 15 Mapoly0060s0062 [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10782] ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN; [GO:0008270] zinc ion binding; [PF02891] MIZ/SP-RING zinc finger; [GO:0003676] nucleic acid binding; [PF02037] SAP domain 19.97 0.8307 16 Mapoly0056s0005 [PF03810] Importin-beta N-terminal domain; [KOG1993] Nuclear transport receptor KAP120 (importin beta superfamily); [GO:0006886] intracellular protein transport; [PTHR10997] IMPORTIN-7, 8, 11; [GO:0008536] Ran GTPase binding; [PF08389] Exportin 1-like protein; [PTHR10997:SF7] IMPORTIN 11 (IMP11) (RAN-BINDING PROTEIN 11) 22.25 0.8096 17 Mapoly0179s0009 [KOG0978] E3 ubiquitin ligase involved in syntaxin degradation; [GO:0005515] protein binding; [PF01465] GRIP domain; [GO:0000042] protein targeting to Golgi 23.66 0.7518 18 Mapoly0078s0014 [PTHR15237:SF0] SUBFAMILY NOT NAMED; [GO:0006281] DNA repair; [KOG2810] Checkpoint 9-1-1 complex, RAD9 component; [GO:0000077] DNA damage checkpoint; [GO:0030896] checkpoint clamp complex; [GO:0000075] cell cycle checkpoint; [PF04139] Rad9; [PTHR15237] DNA REPAIR PROTEIN RAD9 24.00 0.7577 19 Mapoly0052s0012 [GO:0016020] membrane; [PF00520] Ion transport protein; [GO:0055085] transmembrane transport; [K05391] cyclic nucleotide gated channel, other eukaryote; [PTHR10217] VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL; [GO:0006811] ion transport; [PF00027] Cyclic nucleotide-binding domain; [GO:0005216] ion channel activity; [KOG0498] K+-channel ERG and related proteins, contain PAS/PAC sensor domain 25.24 0.7321 20 Mapoly0012s0107 [K13168] splicing factor, arginine/serine-rich 16; [PTHR13161:SF4] SPLICING FACTOR, ARGININE/SERINE-RICH 16; [KOG2548] SWAP mRNA splicing regulator; [PTHR13161] SPLICING FACTOR (SUPPRESSOR OF WHITE APRICOT); [PF09750] Alternative splicing regulator 26.83 0.8089 21 Mapoly0043s0055 [PTHR31115] FAMILY NOT NAMED; [PF10198] Histone acetyltransferases subunit 3 27.39 0.8231 22 Mapoly0043s0095 [PTHR21717:SF12] PROTEIN LCHN [SOURCE:UNIPROTKB/SWISS-PROT,ACC:Q1LX49]; [PTHR21717] TELOMERIC REPEAT BINDING PROTEIN 27.50 0.7830 23 Mapoly0055s0059 [GO:0000124] SAGA complex; [GO:0003712] transcription cofactor activity; [PF12090] Spt20 family; [PTHR13526] P38 INTERACTING PROTEIN 28.91 0.8176 24 Mapoly0030s0125 [PF08429] PLU-1-like protein; [GO:0003677] DNA binding; [GO:0055114] oxidation-reduction process; [KOG1246] DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF02373] JmjC domain, hydroxylase; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PTHR10694:SF8] RETINOBLASTOMA BINDING PROTEIN-RELATED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005634] nucleus; [GO:0005622] intracellular; [PF02375] jmjN domain; [PTHR10694] JUMONJI DOMAIN CONTAINING PROTEIN; [PF02928] C5HC2 zinc finger 29.46 0.8100 25 Mapoly0048s0088 [PF00397] WW domain; [GO:0005515] protein binding; [K12824] transcription elongation regulator 1; [PTHR15377:SF3] SUBFAMILY NOT NAMED; [PTHR15377] TRANSCRIPTION FACTOR CA150B RELATEDTCERG1; [PF01846] FF domain; [KOG0155] Transcription factor CA150 32.73 0.7928 26 Mapoly0006s0210 [GO:0008408] 3'-5' exonuclease activity; [PF01612] 3'-5' exonuclease; [GO:0005622] intracellular; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [PTHR12124] POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; [PF00570] HRDC domain 32.74 0.7473 27 Mapoly0023s0026 [PF00787] PX domain; [PF13901] Domain of unknown function (DUF4206); [PTHR12326] PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN; [GO:0035091] phosphatidylinositol binding 32.86 0.7638 28 Mapoly0028s0080 [GO:0005515] protein binding; [PTHR16266] WD REPEAT DOMAIN 9; [PF00439] Bromodomain; [KOG0644] Uncharacterized conserved protein, contains WD40 repeat and BROMO domains; [PF00400] WD domain, G-beta repeat 33.76 0.7932 29 Mapoly0016s0037 - 35.47 0.7697 30 Mapoly0045s0050 [KOG1881] Anion exchanger adaptor protein Kanadaptin, contains FHA domain; [GO:0005515] protein binding; [PTHR23308:SF2] SMAD NUCLEAR INTERACTING PROTEIN 1; [PF00498] FHA domain; [PTHR23308] NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 35.57 0.7196 31 Mapoly0121s0050 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12547] CCCH ZINC FINGER/TIS11-RELATED; [GO:0046872] metal ion binding 36.18 0.7406 32 Mapoly0084s0037 [GO:0046983] protein dimerization activity; [PTHR11800:SF2] DNA-DIRECTED RNA POLYMERASE II SUBUNIT 3; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [PF01000] RNA polymerase Rpb3/RpoA insert domain; [KOG1522] RNA polymerase II, subunit POLR2C/RPB3; [GO:0006351] transcription, DNA-dependent; [GO:0003676] nucleic acid binding; [GO:0003899] DNA-directed RNA polymerase activity; [PTHR11800] DNA-DIRECTED RNA POLYMERASE; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [PF01193] RNA polymerase Rpb3/Rpb11 dimerisation domain 37.47 0.7195 33 Mapoly0150s0009 [PF12937] F-box-like; [PF00514] Armadillo/beta-catenin-like repeat; [KOG2120] SCF ubiquitin ligase, Skp2 component; [GO:0005515] protein binding; [PTHR23315] BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING 37.95 0.7816 34 Mapoly0007s0058 [PF12796] Ankyrin repeats (3 copies) 39.12 0.7327 35 Mapoly0061s0023 [PF13465] Zinc-finger double domain; [PF00096] Zinc finger, C2H2 type; [PTHR24409] FAMILY NOT NAMED; [GO:0046872] metal ion binding; [PF13894] C2H2-type zinc finger 39.34 0.7680 36 Mapoly0001s0017 [PTHR11618:SF4] TRANSCRIPTION FACTOR IIIB; [GO:0006355] regulation of transcription, DNA-dependent; [PF00382] Transcription factor TFIIB repeat; [GO:0006352] DNA-dependent transcription, initiation; [PTHR11618] TRANSCRIPTION INITIATION FACTOR IIB-RELATED; [GO:0000126] transcription factor TFIIIB complex; [PF07741] Brf1-like TBP-binding domain; [GO:0008270] zinc ion binding; [GO:0017025] TBP-class protein binding; [GO:0006384] transcription initiation from RNA polymerase III promoter; [KOG1598] Transcription initiation factor TFIIIB, Brf1 subunit 40.25 0.7832 37 Mapoly0019s0134 [GO:0003677] DNA binding; [PTHR31251] FAMILY NOT NAMED; [GO:0005634] nucleus; [PF03110] SBP domain 40.62 0.7846 38 Mapoly0043s0035 [KOG4283] Transcription-coupled repair protein CSA, contains WD40 domain; [GO:0005515] protein binding; [K10570] DNA excision repair protein ERCC-8; [PTHR22850] WD40 REPEAT FAMILY; [PF00400] WD domain, G-beta repeat 40.98 0.7425 39 Mapoly0105s0033 [PF07524] Bromodomain associated 41.89 0.7588 40 Mapoly0010s0205 [PTHR15197] COILIN P80; [PTHR15197:SF0] SUBFAMILY NOT NAMED; [K13150] coilin 41.95 0.7332 41 Mapoly0102s0046 [PF01585] G-patch domain; [PTHR13948] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding 41.95 0.7740 42 Mapoly0105s0003 [GO:0005524] ATP binding; [K08827] serine/threonine-protein kinase PRP4 [EC:2.7.11.1]; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [GO:0006468] protein phosphorylation; [KOG0670] U4/U6-associated splicing factor PRP4; [PTHR24056:SF45] SERINE/THREONINE-PROTEIN KINASE PRP4 HOMOLOG; [PTHR24056] CELL DIVISION PROTEIN KINASE 43.01 0.7553 43 Mapoly0003s0071 [PTHR12461] HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED; [PF13621] Cupin-like domain 43.63 0.7211 44 Mapoly0113s0025 [PTHR12957] DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED; [PTHR12957:SF2] DICE1/DEAD/H BOX POLYPEPTIDE; [KOG3768] DEAD box RNA helicase; [K13143] integrator complex subunit 6 44.89 0.7743 45 Mapoly0011s0090 [PF08263] Leucine rich repeat N-terminal domain; [GO:0005515] protein binding; [PF00560] Leucine Rich Repeat; [PF12799] Leucine Rich repeats (2 copies); [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE; [KOG0472] Leucine-rich repeat protein 46.62 0.7636 46 Mapoly0190s0006 [KOG3794] CBF1-interacting corepressor CIR and related proteins; [PF10197] N-terminal domain of CBF1 interacting co-repressor CIR 51.21 0.7895 47 Mapoly0054s0112 [PTHR13620] 3-5 EXONUCLEASE; [PF00035] Double-stranded RNA binding motif; [GO:0008408] 3'-5' exonuclease activity; [PTHR13620:SF2] gb def: cg6744 gene product [drosophila melanogaster]; [PF01612] 3'-5' exonuclease; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [KOG2207] Predicted 3'-5' exonuclease 52.39 0.7494 48 Mapoly0187s0019 [PF00855] PWWP domain; [PF12243] CTD kinase subunit gamma CTK3; [PTHR12550] HEPATOMA-DERIVED GROWTH FACTOR-RELATED; [KOG2669] Regulator of nuclear mRNA 52.67 0.7969 49 Mapoly0115s0048 [PTHR31314] FAMILY NOT NAMED; [PF00249] Myb-like DNA-binding domain; [GO:0003682] chromatin binding; [PF14379] MYB-CC type transfactor, LHEQLE motif 53.24 0.7372 50 Mapoly0030s0052 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR11909] CASEIN KINASE-RELATED; [KOG1164] Casein kinase (serine/threonine/tyrosine protein kinase) 53.72 0.7842