Guide Gene

Gene ID
Mapoly0006s0210
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0008408] 3'-5' exonuclease activity; [PF01612] 3'-5' exonuclease; [GO:0005622] intracellular; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [PTHR12124] POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; [PF00570] HRDC domain

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0006s0210 [GO:0008408] 3'-5' exonuclease activity; [PF01612] 3'-5' exonuclease; [GO:0005622] intracellular; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [PTHR12124] POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; [PF00570] HRDC domain 0.00 1.0000
1 Mapoly0113s0025 [PTHR12957] DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED; [PTHR12957:SF2] DICE1/DEAD/H BOX POLYPEPTIDE; [KOG3768] DEAD box RNA helicase; [K13143] integrator complex subunit 63.610.8245
2 Mapoly0154s0047 [PTHR12360] NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1); [KOG1952] Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains; [PTHR12360:SF1] NF-X1-TYPE ZINC FINGER PROTEIN NFXL16.240.8076
3 Mapoly0012s0107 [K13168] splicing factor, arginine/serine-rich 16; [PTHR13161:SF4] SPLICING FACTOR, ARGININE/SERINE-RICH 16; [KOG2548] SWAP mRNA splicing regulator; [PTHR13161] SPLICING FACTOR (SUPPRESSOR OF WHITE APRICOT); [PF09750] Alternative splicing regulator8.370.8182
4 Mapoly0086s0027 [GO:0005524] ATP binding; [KOG0671] LAMMER dual specificity kinases; [2.7.12.1] Dual-specificity kinase.; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [PTHR24058] DUAL SPECIFICITY PROTEIN KINASE; [GO:0006468] protein phosphorylation; [K08287] dual-specificity kinase [EC:2.7.12.1]14.280.7555
5 Mapoly0056s0005 [PF03810] Importin-beta N-terminal domain; [KOG1993] Nuclear transport receptor KAP120 (importin beta superfamily); [GO:0006886] intracellular protein transport; [PTHR10997] IMPORTIN-7, 8, 11; [GO:0008536] Ran GTPase binding; [PF08389] Exportin 1-like protein; [PTHR10997:SF7] IMPORTIN 11 (IMP11) (RAN-BINDING PROTEIN 11)14.700.7921
6 Mapoly0019s0088 [GO:0006506] GPI anchor biosynthetic process; [GO:0016021] integral to membrane; [GO:0017176] phosphatidylinositol N-acetylglucosaminyltransferase activity; [PF05024] N-acetylglucosaminyl transferase component (Gpi1); [PTHR21329] PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q-RELATED16.430.7279
7 Mapoly0006s0212 [PTHR11200:SF24] TYPE II INOSITOL 5-PHOSPHATASE, ARATH; [PTHR11200] INOSITOL 5-PHOSPHATASE; [PF03372] Endonuclease/Exonuclease/phosphatase family; [KOG0565] Inositol polyphosphate 5-phosphatase and related proteins19.100.7835
8 Mapoly0054s0027 [GO:0006338] chromatin remodeling; [PF04795] PAPA-1-like conserved region; [GO:0006355] regulation of transcription, DNA-dependent; [GO:0031011] Ino80 complex; [PTHR21561] FAMILY NOT NAMED; [PF04438] HIT zinc finger23.240.7611
9 Mapoly0057s0011 [PTHR24104] FAMILY NOT NAMED26.380.7797
10 Mapoly0102s0046 [PF01585] G-patch domain; [PTHR13948] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding27.390.7600
11 Mapoly0033s0119 [PTHR22715:SF0] SUBFAMILY NOT NAMED; [PF05964] F/Y-rich N-terminus; [GO:0005634] nucleus; [PF05965] F/Y rich C-terminus; [PTHR22715] TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 132.740.7473
12 Mapoly0105s0061 [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)33.990.7695
13 Mapoly0813s0001 [KOG2019] Metalloendoprotease HMP1 (insulinase superfamily); [PTHR11851] METALLOPROTEASE; [PF05193] Peptidase M16 inactive domain; [PF08367] Peptidase M16C associated; [GO:0006508] proteolysis38.340.7477
14 Mapoly0015s0191 [PTHR14270:SF0] SUBFAMILY NOT NAMED; [PTHR14270] UNCHARACTERIZED; [KOG4181] Uncharacterized conserved protein41.570.7230
15 Mapoly0013s0152 [PTHR12436:SF4] LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8; [KOG1861] Leucine permease transcriptional regulator; [PTHR12436] 80 KDA MCM3-ASSOCIATED PROTEIN; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family42.330.7665
16 Mapoly0027s0115 [PF12656] DExH-box splicing factor binding site; [PTHR15818] G PATCH AND KOW-CONTAINING; [PTHR15818:SF2] SUBFAMILY NOT NAMED; [K13101] G patch domain and KOW motifs-containing protein44.270.7386
17 Mapoly0043s0041 [PTHR21737] POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3; [K12865] polyglutamine-binding protein 1; [PF00397] WW domain; [GO:0005515] protein binding; [PTHR21737:SF3] POLYGLUTAMINE BINDING PROTEIN 145.350.7455
18 Mapoly0043s0035 [KOG4283] Transcription-coupled repair protein CSA, contains WD40 domain; [GO:0005515] protein binding; [K10570] DNA excision repair protein ERCC-8; [PTHR22850] WD40 REPEAT FAMILY; [PF00400] WD domain, G-beta repeat50.750.7116
19 Mapoly0062s0029 [KOG1982] Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p; [PF08652] RAI1 like PD-(D/E)XK nuclease; [PTHR12395:SF9] SUBFAMILY NOT NAMED; [PTHR12395] DOM-3 RELATED52.520.7531
20 Mapoly0211s0012 -53.890.7574
21 Mapoly0007s0068 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0019901] protein kinase binding; [PF00134] Cyclin, N-terminal domain; [PTHR10026] CYCLIN; [PF02984] Cyclin, C-terminal domain; [GO:0005634] nucleus; [KOG0834] CDK9 kinase-activating protein cyclin T; [GO:0000079] regulation of cyclin-dependent protein serine/threonine kinase activity55.150.7551
22 Mapoly0009s0186 [KOG1315] Predicted DHHC-type Zn-finger protein; [GO:0008270] zinc ion binding; [PF01529] DHHC palmitoyltransferase; [PTHR22883] ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN57.300.5820
23 Mapoly0079s0052 [PF00249] Myb-like DNA-binding domain; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PF04433] SWIRM domain; [KOG1279] Chromatin remodeling factor subunit and related transcription factors; [PTHR12802] SWI/SNF COMPLEX-RELATED; [K11649] SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C57.830.7417
24 Mapoly0054s0112 [PTHR13620] 3-5 EXONUCLEASE; [PF00035] Double-stranded RNA binding motif; [GO:0008408] 3'-5' exonuclease activity; [PTHR13620:SF2] gb def: cg6744 gene product [drosophila melanogaster]; [PF01612] 3'-5' exonuclease; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [KOG2207] Predicted 3'-5' exonuclease61.510.7193
25 Mapoly0190s0007 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [KOG1919] RNA pseudouridylate synthases; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase61.970.7094
26 Mapoly0060s0062 [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10782] ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN; [GO:0008270] zinc ion binding; [PF02891] MIZ/SP-RING zinc finger; [GO:0003676] nucleic acid binding; [PF02037] SAP domain62.060.7423
27 Mapoly0019s0182 [KOG2473] RNA polymerase III transcription factor (TF)IIIC subunit; [PTHR13230] GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5; [PF09734] RNA polymerase III transcription factor (TF)IIIC subunit65.730.7125
28 Mapoly0012s0112 [PF09766] Fms-interacting protein; [KOG2216] Conserved coiled/coiled coil protein; [PTHR13375] FMS INTERACTING PROTEIN; [PTHR13375:SF3] SUBFAMILY NOT NAMED65.820.7221
29 Mapoly0061s0094 [GO:0005634] nucleus; [PTHR15217:SF0] SUBFAMILY NOT NAMED; [PTHR15217] WILMS' TUMOR 1-ASSOCIATING PROTEIN; [KOG2991] Splicing regulator; [GO:0048024] regulation of mRNA splicing, via spliceosome69.320.7279
30 Mapoly0128s0032 [3.5.1.98] Histone deacetylase.; [KOG1342] Histone deacetylase complex, catalytic component RPD3; [K06067] histone deacetylase 1/2 [EC:3.5.1.98]; [PF00850] Histone deacetylase domain; [PTHR10625] HISTONE DEACETYLASE70.940.6974
31 Mapoly0167s0020 [GO:0003677] DNA binding; [GO:0003917] DNA topoisomerase type I activity; [PF02919] Eukaryotic DNA topoisomerase I, DNA binding fragment; [KOG0981] DNA topoisomerase I; [GO:0006265] DNA topological change; [PF01028] Eukaryotic DNA topoisomerase I, catalytic core; [GO:0003918] DNA topoisomerase type II (ATP-hydrolyzing) activity; [GO:0005694] chromosome; [PTHR10290] DNA TOPOISOMERASE I; [PF14370] C-terminal topoisomerase domain; [K03163] DNA topoisomerase I [EC:5.99.1.2]; [5.99.1.2] DNA topoisomerase.71.830.7355
32 Mapoly0066s0113 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [K13127] RING finger protein 113A; [KOG1813] Predicted E3 ubiquitin ligase; [PTHR12930] ZINC FINGER PROTEIN 183; [GO:0046872] metal ion binding; [PF13920] Zinc finger, C3HC4 type (RING finger)74.760.7316
33 Mapoly0005s0227 [PF01663] Type I phosphodiesterase / nucleotide pyrophosphatase; [GO:0003824] catalytic activity; [KOG2125] Glycosylphosphatidylinositol anchor synthesis protein; [2.7.-.-] Transferring phosphorous-containing groups.; [K05310] ethanolaminephosphotransferase [EC:2.7.-.-]; [PTHR23072:SF0] SUBFAMILY NOT NAMED; [PTHR23072] PHOSPHATIDYLINOSITOL GLYCAN-RELATED75.270.6797
34 Mapoly0007s0209 [PF15275] PEHE domain; [GO:0005515] protein binding; [PF00439] Bromodomain; [PTHR22881] BROMODOMAIN CONTAINING PROTEIN76.130.7359
35 Mapoly0016s0037 -76.840.7161
36 Mapoly0011s0138 [PF12717] non-SMC mitotic condensation complex subunit 1; [K13141] integrator complex subunit 4; [PTHR20938] UNCHARACTERIZED; [PTHR20938:SF0] SUBFAMILY NOT NAMED76.930.7362
37 Mapoly0001s0487 [PTHR16216:SF2] SUBFAMILY NOT NAMED; [PTHR16216] FAMILY NOT NAMED77.090.7381
38 Mapoly0096s0043 [PF14968] Coiled coil protein 84; [PTHR31198] FAMILY NOT NAMED77.840.6910
39 Mapoly0013s0146 [PTHR11772] ASPARAGINE SYNTHETASE; [PTHR11772:SF3] ASPARAGINE SYNTHETASE; [GO:0008152] metabolic process; [GO:0006529] asparagine biosynthetic process; [KOG0573] Asparagine synthase; [PF00733] Asparagine synthase; [PF13537] Glutamine amidotransferase domain; [GO:0004066] asparagine synthase (glutamine-hydrolyzing) activity78.520.7181
40 Mapoly0036s0143 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [PF09273] Rubisco LSMT substrate-binding79.910.7080
41 Mapoly0001s0567 [K01410] mitochondrial intermediate peptidase [EC:3.4.24.59]; [PTHR11804] PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED; [PTHR11804:SF5] MITOCHONDRIAL INTERMEDIATE PEPTIDASE; [GO:0004222] metalloendopeptidase activity; [3.4.24.59] Mitochondrial intermediate peptidase.; [PF01432] Peptidase family M3; [GO:0006508] proteolysis; [KOG2090] Metalloendopeptidase family - mitochondrial intermediate peptidase82.310.7334
42 Mapoly0007s0058 [PF12796] Ankyrin repeats (3 copies)82.750.6788
43 Mapoly0009s0245 [PF00397] WW domain; [GO:0005515] protein binding; [KOG0144] RNA-binding protein CUGBP1/BRUNO (RRM superfamily); [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)84.410.6969
44 Mapoly0167s0022 [PTHR15954] UNCHARACTERIZED; [PF08700] Vps51/Vps67; [PTHR15954:SF4] SUBFAMILY NOT NAMED84.560.7331
45 Mapoly0154s0004 [PTHR12999] FAMILY NOT NAMED; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)85.650.7286
46 Mapoly0059s0106 [GO:0003677] DNA binding; [PF12937] F-box-like; [GO:0005524] ATP binding; [GO:0005515] protein binding; [GO:0008270] zinc ion binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG1001] Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily; [PF07496] CW-type Zinc Finger85.670.7208
47 Mapoly0057s0101 [PF14792] DNA polymerase beta palm; [GO:0003677] DNA binding; [K03512] DNA polymerase lambda subunit [EC:2.7.7.7 4.2.99.-]; [KOG2534] DNA polymerase IV (family X); [PF14791] DNA polymerase beta thumb; [2.7.7.7] DNA-directed DNA polymerase.; [GO:0005634] nucleus; [4.2.99.-] Other carbon-oxygen lyases.; [GO:0034061] DNA polymerase activity; [PTHR11276] DNA POLYMERASE TYPE-X FAMILY MEMBER; [PTHR11276:SF1] DNA POLYMERASE TYPE-X FAMILY MEMBER; [PF14716] Helix-hairpin-helix domain; [PF10391] Fingers domain of DNA polymerase lambda88.860.6210
48 Mapoly0007s0076 [K12878] THO complex subunit 1; [PTHR13265] THO COMPLEX SUBUNIT 1; [PF11957] THO complex subunit 1 transcription elongation factor; [PTHR13265:SF0] SUBFAMILY NOT NAMED; [KOG2491] Nuclear matrix protein89.390.7255
49 Mapoly0055s0059 [GO:0000124] SAGA complex; [GO:0003712] transcription cofactor activity; [PF12090] Spt20 family; [PTHR13526] P38 INTERACTING PROTEIN90.100.7275
50 Mapoly0006s0037 [PF03828] Cid1 family poly A polymerase; [KOG2277] S-M checkpoint control protein CID1 and related nucleotidyltransferases; [PTHR23092] TOPOISOMERASE-RELATED PROTEIN; [PF01909] Nucleotidyltransferase domain; [GO:0016779] nucleotidyltransferase activity; [PTHR23092:SF15] SUBFAMILY NOT NAMED91.850.7224
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