Guide Gene

Gene ID
Mapoly0066s0113
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [K13127] RING finger protein 113A; [KOG1813] Predicted E3 ubiquitin ligase; [PTHR12930] ZINC FINGER PROTEIN 183; [GO:0046872] metal ion binding; [PF13920] Zinc finger, C3HC4 type (RING finger)

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0066s0113 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [K13127] RING finger protein 113A; [KOG1813] Predicted E3 ubiquitin ligase; [PTHR12930] ZINC FINGER PROTEIN 183; [GO:0046872] metal ion binding; [PF13920] Zinc finger, C3HC4 type (RING finger) 0.00 1.0000
1 Mapoly0120s0015 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071:SF152] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [KOG0885] Peptidyl-prolyl cis-trans isomerase; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [K12737] peptidyl-prolyl cis-trans isomerase SDCCAG10 [EC:5.2.1.8]; [5.2.1.8] Peptidylprolyl isomerase.1.000.9006
2 Mapoly0041s0104 [PTHR31307] FAMILY NOT NAMED; [PF13837] Myb/SANT-like DNA-binding domain2.830.8655
3 Mapoly0080s0020 [PTHR12072] CWF19, CELL CYCLE CONTROL PROTEIN; [PF04677] Protein similar to CwfJ C-terminus 1; [KOG2477] Uncharacterized conserved protein; [PTHR12072:SF5] gb def: putative protein [arabidopsis thaliana]; [PF04676] Protein similar to CwfJ C-terminus 23.000.8775
4 Mapoly0007s0068 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0019901] protein kinase binding; [PF00134] Cyclin, N-terminal domain; [PTHR10026] CYCLIN; [PF02984] Cyclin, C-terminal domain; [GO:0005634] nucleus; [KOG0834] CDK9 kinase-activating protein cyclin T; [GO:0000079] regulation of cyclin-dependent protein serine/threonine kinase activity4.900.8876
5 Mapoly0154s0004 [PTHR12999] FAMILY NOT NAMED; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)4.900.8748
6 Mapoly0001s0482 [PF05764] YL1 nuclear protein; [KOG2897] DNA-binding protein YL1 and related proteins; [GO:0006355] regulation of transcription, DNA-dependent; [PF08265] YL1 nuclear protein C-terminal domain; [K11664] vacuolar protein sorting-associated protein 72; [GO:0005634] nucleus; [PTHR13275] YL-1 PROTEIN (TRANSCRIPTION FACTOR-LIKE 1)5.290.8667
7 Mapoly0001s0487 [PTHR16216:SF2] SUBFAMILY NOT NAMED; [PTHR16216] FAMILY NOT NAMED6.000.8703
8 Mapoly0172s0015 [PTHR13471] TETRATRICOPEPTIDE-LIKE HELICAL; [PF08424] NRDE-2, necessary for RNA interference8.120.8525
9 Mapoly0007s0033 [PF00249] Myb-like DNA-binding domain; [GO:0003682] chromatin binding; [PTHR21717] TELOMERIC REPEAT BINDING PROTEIN8.490.8400
10 Mapoly0009s0169 [GO:0006355] regulation of transcription, DNA-dependent; [PF04494] WD40 associated region in TFIID subunit; [GO:0005515] protein binding; [K03130] transcription initiation factor TFIID subunit 5; [GO:0005634] nucleus; [PTHR19879] TRANSCRIPTION INITIATION FACTOR TFIID; [KOG0263] Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA); [PTHR19879:SF1] WD40 REPEAT PROTEIN; [PF00400] WD domain, G-beta repeat8.660.8743
11 Mapoly0030s0047 [PF07572] Bucentaur or craniofacial development; [KOG4776] Uncharacterized conserved protein BCNT; [PTHR23227] BUCENTAUR RELATED9.490.8546
12 Mapoly0025s0086 [KOG3800] Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor; [PF06391] CDK-activating kinase assembly factor MAT1; [GO:0005634] nucleus; [PTHR12683] FAMILY NOT NAMED; [K10842] CDK-activating kinase assembly factor MAT1; [GO:0007049] cell cycle9.900.8448
13 Mapoly0019s0182 [KOG2473] RNA polymerase III transcription factor (TF)IIIC subunit; [PTHR13230] GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5; [PF09734] RNA polymerase III transcription factor (TF)IIIC subunit11.180.8285
14 Mapoly0044s0047 [PTHR11370] DNA-REPAIR PROTEIN XRCC1; [K10803] DNA-repair protein XRCC1; [PF00533] BRCA1 C Terminus (BRCT) domain11.620.8111
15 Mapoly0007s0032 [GO:0008915] lipid-A-disaccharide synthase activity; [PTHR30372] LIPID-A-DISACCHARIDE SYNTHASE; [PF02684] Lipid-A-disaccharide synthetase; [GO:0009245] lipid A biosynthetic process; [PTHR30372:SF0] LIPID-A-DISACCHARIDE SYNTHASE11.750.8109
16 Mapoly0079s0052 [PF00249] Myb-like DNA-binding domain; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PF04433] SWIRM domain; [KOG1279] Chromatin remodeling factor subunit and related transcription factors; [PTHR12802] SWI/SNF COMPLEX-RELATED; [K11649] SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C12.490.8507
17 Mapoly0061s0094 [GO:0005634] nucleus; [PTHR15217:SF0] SUBFAMILY NOT NAMED; [PTHR15217] WILMS' TUMOR 1-ASSOCIATING PROTEIN; [KOG2991] Splicing regulator; [GO:0048024] regulation of mRNA splicing, via spliceosome12.650.8354
18 Mapoly0125s0046 [PTHR11938] FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE; [KOG1800] Ferredoxin/adrenodoxin reductase; [1.18.1.2] Ferredoxin--NADP(+) reductase.; [K00528] ferredoxin--NADP+ reductase [EC:1.18.1.2]14.390.8290
19 Mapoly0066s0029 [PTHR12707] PINN; [K13114] pinin; [KOG3756] Pinin (desmosome-associated protein); [PF04696] pinin/SDK/memA/ protein conserved region14.490.8442
20 Mapoly0015s0012 [PTHR22093] LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 115.430.8401
21 Mapoly0007s0076 [K12878] THO complex subunit 1; [PTHR13265] THO COMPLEX SUBUNIT 1; [PF11957] THO complex subunit 1 transcription elongation factor; [PTHR13265:SF0] SUBFAMILY NOT NAMED; [KOG2491] Nuclear matrix protein16.250.8288
22 Mapoly0091s0021 [PTHR13135] CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26; [PF10258] PHAX RNA-binding domain; [KOG3948] Mediator of U snRNA nuclear export PHAX16.490.8429
23 Mapoly0100s0030 -16.520.8348
24 Mapoly0001s0040 [PTHR12466:SF8] SUBFAMILY NOT NAMED; [PF05179] RNA pol II accessory factor, Cdc73 family; [KOG3786] RNA polymerase II assessory factor Cdc73p; [PTHR12466] CDC73 DOMAIN PROTEIN18.970.8546
25 Mapoly0076s0021 [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [KOG0342] ATP-dependent RNA helicase pitchoune; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PTHR24031:SF98] PUTATIVE ATP-DEPENDENT RNA HELICASE C22F3.08C19.600.8098
26 Mapoly0211s0012 -19.600.8518
27 Mapoly0119s0045 [PF00225] Kinesin motor domain; [GO:0005524] ATP binding; [PTHR24115] FAMILY NOT NAMED; [PTHR24115:SF194] SUBFAMILY NOT NAMED; [KOG0242] Kinesin-like protein; [GO:0005871] kinesin complex; [K10397] kinesin family member 6/9; [GO:0007018] microtubule-based movement; [GO:0008017] microtubule binding; [GO:0003777] microtubule motor activity21.020.8199
28 Mapoly0015s0022 [GO:0005634] nucleus; [PTHR12722] XAP-5 PROTEIN-RELATED; [PF04921] XAP5, circadian clock regulator; [K13119] protein FAM50; [KOG2894] Uncharacterized conserved protein XAP-522.450.7934
29 Mapoly0138s0006 [GO:0070985] TFIIK complex; [GO:0006355] regulation of transcription, DNA-dependent; [GO:0016538] cyclin-dependent protein serine/threonine kinase regulator activity; [GO:0019901] protein kinase binding; [PTHR10026:SF8] CYCLIN H; [PF00134] Cyclin, N-terminal domain; [PTHR10026] CYCLIN; [KOG2496] Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit; [GO:0006351] transcription, DNA-dependent; [K06634] cyclin H; [GO:0000079] regulation of cyclin-dependent protein serine/threonine kinase activity22.720.7792
30 Mapoly0114s0028 -22.960.8237
31 Mapoly0013s0146 [PTHR11772] ASPARAGINE SYNTHETASE; [PTHR11772:SF3] ASPARAGINE SYNTHETASE; [GO:0008152] metabolic process; [GO:0006529] asparagine biosynthetic process; [KOG0573] Asparagine synthase; [PF00733] Asparagine synthase; [PF13537] Glutamine amidotransferase domain; [GO:0004066] asparagine synthase (glutamine-hydrolyzing) activity23.450.8051
32 Mapoly0028s0050 [PTHR13421] FAMILY NOT NAMED; [PF12251] snRNA-activating protein of 50kDa MW C terminal; [KOG2664] Small nuclear RNA activating protein complex - 50kD subunit (SNAP50)23.830.7936
33 Mapoly0061s0133 [PTHR15885] UNCHARACTERIZED24.660.8165
34 Mapoly0148s0013 [PTHR12864] RAN BINDING PROTEIN 9-RELATED; [PF10607] CTLH/CRA C-terminal to LisH motif domain; [KOG2659] LisH motif-containing protein25.040.8201
35 Mapoly0036s0143 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [PF09273] Rubisco LSMT substrate-binding26.080.7804
36 Mapoly0089s0068 [PTHR21683] UNCHARACTERIZED; [PF13863] Domain of unknown function (DUF4200); [PTHR21683:SF2] SUBFAMILY NOT NAMED26.190.8095
37 Mapoly0066s0098 [GO:0006284] base-excision repair; [KOG2875] 8-oxoguanine DNA glycosylase; [GO:0006289] nucleotide-excision repair; [4.2.99.18] DNA-(apurinic or apyrimidinic site) lyase.; [PTHR10242] N-GLYCOSYLASE/DNA LYASE; [PF07934] 8-oxoguanine DNA glycosylase, N-terminal domain; [PF00730] HhH-GPD superfamily base excision DNA repair protein; [K03660] N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]; [GO:0003684] damaged DNA binding; [GO:0008534] oxidized purine nucleobase lesion DNA N-glycosylase activity; [3.2.2.-] Hydrolyzing N-glycosyl compounds.26.550.8101
38 Mapoly0077s0060 [GO:0055114] oxidation-reduction process; [KOG0069] Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily); [PTHR10996] 2-HYDROXYACID DEHYDROGENASE-RELATED; [GO:0051287] NAD binding; [PF02826] D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain27.020.7518
39 Mapoly0012s0095 [PTHR12419] OTU DOMAIN CONTAINING PROTEIN; [PF02810] SEC-C motif; [PF02338] OTU-like cysteine protease27.570.7873
40 Mapoly0140s0038 [PF00169] PH domain; [PTHR22902] PH DOMAIN-CONTAINING28.140.7574
41 Mapoly0052s0047 [PF03556] Cullin binding; [PTHR12281] RP42 RELATED28.430.7729
42 Mapoly0102s0046 [PF01585] G-patch domain; [PTHR13948] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding28.910.8119
43 Mapoly0026s0140 -28.980.7940
44 Mapoly0115s0054 [KOG4709] Uncharacterized conserved protein; [PF09805] Nucleolar protein 12 (25kDa)29.560.8365
45 Mapoly0067s0020 [PTHR23329] TUFTELIN-INTERACTING PROTEIN 11-RELATED; [KOG2185] Predicted RNA-processing protein, contains G-patch domain; [PF01585] G-patch domain; [PTHR23329:SF2] ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN PROTEIN; [GO:0003676] nucleic acid binding30.000.7497
46 Mapoly0144s0004 [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [KOG0745] Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily); [PF07724] AAA domain (Cdc48 subfamily); [GO:0009376] HslUV protease complex; [PTHR11262:SF3] ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU; [PTHR11262] HSL AND CLP PROTEASE; [GO:0016887] ATPase activity; [PF10431] C-terminal, D2-small domain, of ClpB protein; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0070011] peptidase activity, acting on L-amino acid peptides30.980.7629
47 Mapoly0075s0060 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR15725] ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING; [GO:0046872] metal ion binding31.110.8315
48 Mapoly0026s0067 [PF10187] N-terminal domain of NEFA-interacting nuclear protein NIP30; [PTHR13495:SF0] SUBFAMILY NOT NAMED; [KOG4036] Uncharacterized conserved protein; [PTHR13495] NEFA-INTERACTING NUCLEAR PROTEIN NIP3032.650.7826
49 Mapoly0107s0026 [GO:0003723] RNA binding; [GO:0005737] cytoplasm; [K12839] survival of motor neuron-related-splicing factor 30; [GO:0006397] mRNA processing; [KOG3026] Splicing factor SPF30; [GO:0005634] nucleus; [PF06003] Survival motor neuron protein (SMN); [PTHR12664] SURVIVAL MOTOR NEURON PROTEIN32.650.8272
50 Mapoly0113s0062 [GO:0008762] UDP-N-acetylmuramate dehydrogenase activity; [KOG1232] Proteins containing the FAD binding domain; [GO:0050660] flavin adenine dinucleotide binding; [GO:0055114] oxidation-reduction process; [PF02913] FAD linked oxidases, C-terminal domain; [GO:0016491] oxidoreductase activity; [GO:0003824] catalytic activity; [PTHR11748] D-LACTATE DEHYDROGENASE; [PF01565] FAD binding domain34.470.8265
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