Guide Gene

Gene ID
Mapoly0077s0060
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0055114] oxidation-reduction process; [KOG0069] Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily); [PTHR10996] 2-HYDROXYACID DEHYDROGENASE-RELATED; [GO:0051287] NAD binding; [PF02826] D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0077s0060 [GO:0055114] oxidation-reduction process; [KOG0069] Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily); [PTHR10996] 2-HYDROXYACID DEHYDROGENASE-RELATED; [GO:0051287] NAD binding; [PF02826] D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 0.00 1.0000
1 Mapoly0001s0482 [PF05764] YL1 nuclear protein; [KOG2897] DNA-binding protein YL1 and related proteins; [GO:0006355] regulation of transcription, DNA-dependent; [PF08265] YL1 nuclear protein C-terminal domain; [K11664] vacuolar protein sorting-associated protein 72; [GO:0005634] nucleus; [PTHR13275] YL-1 PROTEIN (TRANSCRIPTION FACTOR-LIKE 1)9.700.7755
2 Mapoly0022s0039 [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [KOG0643] Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1); [PF00400] WD domain, G-beta repeat10.250.7246
3 Mapoly0079s0052 [PF00249] Myb-like DNA-binding domain; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PF04433] SWIRM domain; [KOG1279] Chromatin remodeling factor subunit and related transcription factors; [PTHR12802] SWI/SNF COMPLEX-RELATED; [K11649] SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C15.300.7609
4 Mapoly0105s0008 [GO:0003677] DNA binding; [KOG1745] Histones H3 and H4; [GO:0000786] nucleosome; [K11253] histone H3; [PTHR11426] HISTONE H3; [PF00125] Core histone H2A/H2B/H3/H418.000.7283
5 Mapoly0043s0041 [PTHR21737] POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3; [K12865] polyglutamine-binding protein 1; [PF00397] WW domain; [GO:0005515] protein binding; [PTHR21737:SF3] POLYGLUTAMINE BINDING PROTEIN 121.260.7520
6 Mapoly0007s0209 [PF15275] PEHE domain; [GO:0005515] protein binding; [PF00439] Bromodomain; [PTHR22881] BROMODOMAIN CONTAINING PROTEIN24.120.7541
7 Mapoly0061s0094 [GO:0005634] nucleus; [PTHR15217:SF0] SUBFAMILY NOT NAMED; [PTHR15217] WILMS' TUMOR 1-ASSOCIATING PROTEIN; [KOG2991] Splicing regulator; [GO:0048024] regulation of mRNA splicing, via spliceosome24.620.7487
8 Mapoly0066s0113 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [K13127] RING finger protein 113A; [KOG1813] Predicted E3 ubiquitin ligase; [PTHR12930] ZINC FINGER PROTEIN 183; [GO:0046872] metal ion binding; [PF13920] Zinc finger, C3HC4 type (RING finger)27.020.7518
9 Mapoly0004s0265 -29.290.7031
10 Mapoly0036s0143 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [PF09273] Rubisco LSMT substrate-binding29.730.7259
11 Mapoly0033s0025 [PTHR31169] FAMILY NOT NAMED; [PF10497] Zinc-finger domain of monoamine-oxidase A repressor R131.810.6851
12 Mapoly0019s0182 [KOG2473] RNA polymerase III transcription factor (TF)IIIC subunit; [PTHR13230] GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5; [PF09734] RNA polymerase III transcription factor (TF)IIIC subunit33.410.7223
13 Mapoly0015s0032 [PF13516] Leucine Rich repeat; [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN37.500.6950
14 Mapoly0030s0052 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR11909] CASEIN KINASE-RELATED; [KOG1164] Casein kinase (serine/threonine/tyrosine protein kinase)37.510.7445
15 Mapoly0137s0031 [PTHR11804] PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED; [GO:0004222] metalloendopeptidase activity; [K01414] oligopeptidase A [EC:3.4.24.70]; [KOG2089] Metalloendopeptidase family - saccharolysin & thimet oligopeptidase; [PF01432] Peptidase family M3; [3.4.24.70] Oligopeptidase A.; [GO:0006508] proteolysis37.710.5519
16 Mapoly0012s0107 [K13168] splicing factor, arginine/serine-rich 16; [PTHR13161:SF4] SPLICING FACTOR, ARGININE/SERINE-RICH 16; [KOG2548] SWAP mRNA splicing regulator; [PTHR13161] SPLICING FACTOR (SUPPRESSOR OF WHITE APRICOT); [PF09750] Alternative splicing regulator38.990.7340
17 Mapoly0114s0005 [KOG1981] SOK1 kinase belonging to the STE20/SPS1/GC kinase family; [PF05794] T-complex protein 11; [PTHR12832] TESTIS-SPECIFIC PROTEIN PBS13 (T-COMPLEX 11 )39.500.5958
18 Mapoly0066s0029 [PTHR12707] PINN; [K13114] pinin; [KOG3756] Pinin (desmosome-associated protein); [PF04696] pinin/SDK/memA/ protein conserved region41.460.7340
19 Mapoly0007s0033 [PF00249] Myb-like DNA-binding domain; [GO:0003682] chromatin binding; [PTHR21717] TELOMERIC REPEAT BINDING PROTEIN42.000.7258
20 Mapoly0013s0146 [PTHR11772] ASPARAGINE SYNTHETASE; [PTHR11772:SF3] ASPARAGINE SYNTHETASE; [GO:0008152] metabolic process; [GO:0006529] asparagine biosynthetic process; [KOG0573] Asparagine synthase; [PF00733] Asparagine synthase; [PF13537] Glutamine amidotransferase domain; [GO:0004066] asparagine synthase (glutamine-hydrolyzing) activity43.450.7244
21 Mapoly0148s0013 [PTHR12864] RAN BINDING PROTEIN 9-RELATED; [PF10607] CTLH/CRA C-terminal to LisH motif domain; [KOG2659] LisH motif-containing protein44.250.7307
22 Mapoly0024s0115 [GO:0008270] zinc ion binding; [KOG0314] Predicted E3 ubiquitin ligase; [GO:0005634] nucleus; [PF08783] DWNN domain; [PTHR15439] RETINOBLASTOMA-BINDING PROTEIN 6; [PF13696] Zinc knuckle44.740.6339
23 Mapoly0056s0111 [GO:0006355] regulation of transcription, DNA-dependent; [PTHR13581] MRG-BINDING PROTEIN; [PF07904] Chromatin modification-related protein EAF7; [GO:0043189] H4/H2A histone acetyltransferase complex; [GO:0005634] nucleus46.540.6949
24 Mapoly0007s0068 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0019901] protein kinase binding; [PF00134] Cyclin, N-terminal domain; [PTHR10026] CYCLIN; [PF02984] Cyclin, C-terminal domain; [GO:0005634] nucleus; [KOG0834] CDK9 kinase-activating protein cyclin T; [GO:0000079] regulation of cyclin-dependent protein serine/threonine kinase activity48.250.7408
25 Mapoly0065s0067 [PTHR13165] ARSENITE-RESISTANCE PROTEIN 2; [PF12066] Domain of unknown function (DUF3546); [PF04959] Arsenite-resistance protein 2; [KOG2295] C2H2 Zn-finger protein; [PTHR13165:SF0] SUBFAMILY NOT NAMED50.990.7216
26 Mapoly0028s0019 [K07359] calcium/calmodulin-dependent protein kinase kinase [EC:2.7.11.17]; [GO:0005524] ATP binding; [PTHR24347] SERINE/THREONINE-PROTEIN KINASE; [PF00069] Protein kinase domain; [PTHR24347:SF1] CALCIUM/CALMODULIN DEPENDENT PROTEIN KINASE KINASE 1; [2.7.11.17] Calcium/calmodulin-dependent protein kinase.; [GO:0004672] protein kinase activity; [KOG0616] cAMP-dependent protein kinase catalytic subunit (PKA); [GO:0006468] protein phosphorylation51.170.7172
27 Mapoly0019s0005 [PTHR12942] STEP II SPLICING FACTOR SLU7; [PTHR12942:SF2] SUBFAMILY NOT NAMED; [KOG2560] RNA splicing factor - Slu7p; [K12819] pre-mRNA-processing factor SLU7; [PF11708] Pre-mRNA splicing Prp18-interacting factor52.970.6701
28 Mapoly0009s0245 [PF00397] WW domain; [GO:0005515] protein binding; [KOG0144] RNA-binding protein CUGBP1/BRUNO (RRM superfamily); [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)53.760.7010
29 Mapoly0009s0110 [PF03468] XS domain; [GO:0031047] gene silencing by RNA; [PF13920] Zinc finger, C3HC4 type (RING finger)62.060.6463
30 Mapoly0117s0022 [KOG3467] Histone H4; [GO:0003677] DNA binding; [PTHR10484] HISTONE H4; [K11254] histone H4; [PF00125] Core histone H2A/H2B/H3/H462.930.6568
31 Mapoly0023s0060 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [GO:0004000] adenosine deaminase activity; [PTHR10910] EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN; [PF02137] Adenosine-deaminase (editase) domain63.640.6785
32 Mapoly0059s0054 [GO:0006338] chromatin remodeling; [PTHR10019] SNF5; [GO:0000228] nuclear chromosome; [K11648] SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; [PF04855] SNF5 / SMARCB1 / INI165.730.6704
33 Mapoly0096s0028 [PTHR21683:SF3] SUBFAMILY NOT NAMED; [PTHR21683] UNCHARACTERIZED; [PF13863] Domain of unknown function (DUF4200)65.950.7052
34 Mapoly0120s0015 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071:SF152] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [KOG0885] Peptidyl-prolyl cis-trans isomerase; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [K12737] peptidyl-prolyl cis-trans isomerase SDCCAG10 [EC:5.2.1.8]; [5.2.1.8] Peptidylprolyl isomerase.69.800.7215
35 Mapoly0154s0004 [PTHR12999] FAMILY NOT NAMED; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)69.850.7230
36 Mapoly0113s0025 [PTHR12957] DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED; [PTHR12957:SF2] DICE1/DEAD/H BOX POLYPEPTIDE; [KOG3768] DEAD box RNA helicase; [K13143] integrator complex subunit 671.940.7124
37 Mapoly0035s0095 [GO:0003677] DNA binding; [PF00538] linker histone H1 and H5 family; [GO:0000786] nucleosome; [GO:0005634] nucleus; [PTHR11467] HISTONE H1/H5; [GO:0006334] nucleosome assembly; [K11275] histone H1/572.070.6742
38 Mapoly0006s0037 [PF03828] Cid1 family poly A polymerase; [KOG2277] S-M checkpoint control protein CID1 and related nucleotidyltransferases; [PTHR23092] TOPOISOMERASE-RELATED PROTEIN; [PF01909] Nucleotidyltransferase domain; [GO:0016779] nucleotidyltransferase activity; [PTHR23092:SF15] SUBFAMILY NOT NAMED74.910.7170
39 Mapoly0079s0042 [GO:0003723] RNA binding; [KOG2202] U2 snRNP splicing factor, small subunit, and related proteins; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12620] U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT; [GO:0005634] nucleus; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [GO:0046872] metal ion binding75.180.6979
40 Mapoly0095s0008 [PTHR11135] HISTONE ACETYLTRANSFERASE-RELATED; [PF04055] Radical SAM superfamily; [GO:0008080] N-acetyltransferase activity; [PF00583] Acetyltransferase (GNAT) family; [GO:0003824] catalytic activity; [KOG2535] RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase; [GO:0051536] iron-sulfur cluster binding; [2.3.1.48] Histone acetyltransferase.; [PTHR11135:SF0] SUBFAMILY NOT NAMED; [K07739] elongator complex protein 3 [EC:2.3.1.48]75.720.6305
41 Mapoly0001s0525 [K14408] cleavage stimulation factor subunit 3; [GO:0006397] mRNA processing; [GO:0005634] nucleus; [KOG1914] mRNA cleavage and polyadenylation factor I complex, subunit RNA14; [PTHR19980] RNA CLEAVAGE STIMULATION FACTOR; [PF05843] Suppressor of forked protein (Suf)76.320.7124
42 Mapoly0105s0047 [PTHR12447] UNCHARACTERIZED WITH ANKYRIN REPEAT DOMAIN; [PF11904] GPCR-chaperone; [KOG0522] Ankyrin repeat protein; [PTHR12447:SF5] UNCHARACTERIZED; [PF13857] Ankyrin repeats (many copies)76.540.6730
43 Mapoly0041s0104 [PTHR31307] FAMILY NOT NAMED; [PF13837] Myb/SANT-like DNA-binding domain76.940.6905
44 Mapoly0037s0054 [PTHR13428] INNER NUCLEAR MEMBRANE PROTEIN MAN1 (LEM DOMAIN CONTAINING PROTEIN); [PTHR13428:SF7] SUBFAMILY NOT NAMED; [PF09402] Man1-Src1p-C-terminal domain; [GO:0005639] integral to nuclear inner membrane77.420.6233
45 Mapoly0020s0030 [PF15346] Arginine and glutamate-rich 1; [PTHR31711] FAMILY NOT NAMED77.960.6491
46 Mapoly0048s0088 [PF00397] WW domain; [GO:0005515] protein binding; [K12824] transcription elongation regulator 1; [PTHR15377:SF3] SUBFAMILY NOT NAMED; [PTHR15377] TRANSCRIPTION FACTOR CA150B RELATEDTCERG1; [PF01846] FF domain; [KOG0155] Transcription factor CA15079.200.7038
47 Mapoly0053s0040 [KOG2911] Uncharacterized conserved protein; [PF03357] Snf7; [GO:0015031] protein transport; [PTHR22761] SNF7 - RELATED79.420.6626
48 Mapoly0003s0275 [PF00097] Zinc finger, C3HC4 type (RING finger); [GO:0046872] metal ion binding; [PTHR10825] RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT80.490.6883
49 Mapoly0172s0015 [PTHR13471] TETRATRICOPEPTIDE-LIKE HELICAL; [PF08424] NRDE-2, necessary for RNA interference82.410.7130
50 Mapoly0211s0012 -86.960.7218
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