Guide Gene

Gene ID
Mapoly0202s0011
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003723] RNA binding; [PF02854] MIF4G domain; [GO:0005515] protein binding; [PTHR12839] NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 (UP-FRAMESHIFT SUPPRESSOR 2); [K14327] regulator of nonsense transcripts 2; [PF04050] Up-frameshift suppressor 2; [KOG2051] Nonsense-mediated mRNA decay 2 protein

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0202s0011 [GO:0003723] RNA binding; [PF02854] MIF4G domain; [GO:0005515] protein binding; [PTHR12839] NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 (UP-FRAMESHIFT SUPPRESSOR 2); [K14327] regulator of nonsense transcripts 2; [PF04050] Up-frameshift suppressor 2; [KOG2051] Nonsense-mediated mRNA decay 2 protein 0.00 1.0000
1 Mapoly0154s0047 [PTHR12360] NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1); [KOG1952] Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains; [PTHR12360:SF1] NF-X1-TYPE ZINC FINGER PROTEIN NFXL12.000.8597
2 Mapoly0067s0058 [GO:0008270] zinc ion binding; [PTHR23336] ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.; [PF07496] CW-type Zinc Finger3.610.8878
3 Mapoly0001s0255 [PTHR13258] UNCHARACTERIZED; [PTHR13258:SF0] SUBFAMILY NOT NAMED; [KOG2939] Uncharacterized conserved protein; [PF10475] Protein of unknown function N-terminal domain (DUF2450); [PF10474] Protein of unknown function C-terminus (DUF2451)3.870.8390
4 Mapoly0033s0119 [PTHR22715:SF0] SUBFAMILY NOT NAMED; [PF05964] F/Y-rich N-terminus; [GO:0005634] nucleus; [PF05965] F/Y rich C-terminus; [PTHR22715] TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 16.000.8322
5 Mapoly0034s0125 [PF08243] SPT2 chromatin protein; [PTHR22691] YEAST SPT2-RELATED6.160.8003
6 Mapoly0016s0038 [PF11816] Domain of unknown function (DUF3337); [GO:0005515] protein binding; [KOG0308] Conserved WD40 repeat-containing protein; [PTHR19862] FAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat11.400.7507
7 Mapoly0187s0019 [PF00855] PWWP domain; [PF12243] CTD kinase subunit gamma CTK3; [PTHR12550] HEPATOMA-DERIVED GROWTH FACTOR-RELATED; [KOG2669] Regulator of nuclear mRNA12.250.8582
8 Mapoly0102s0046 [PF01585] G-patch domain; [PTHR13948] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding12.370.8170
9 Mapoly0001s0383 -13.230.7926
10 Mapoly0033s0154 [GO:0005737] cytoplasm; [GO:0005515] protein binding; [PF03114] BAR domain13.640.7805
11 Mapoly0043s0055 [PTHR31115] FAMILY NOT NAMED; [PF10198] Histone acetyltransferases subunit 314.420.8399
12 Mapoly0079s0042 [GO:0003723] RNA binding; [KOG2202] U2 snRNP splicing factor, small subunit, and related proteins; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12620] U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT; [GO:0005634] nucleus; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [GO:0046872] metal ion binding15.490.8001
13 Mapoly0030s0035 [PTHR10919] FAMILY NOT NAMED; [PF01803] LIM-domain binding protein; [KOG4057] Uncharacterized conserved protein16.910.8120
14 Mapoly0032s0118 [PTHR22835] ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN; [GO:0046872] metal ion binding; [PF01363] FYVE zinc finger18.000.7869
15 Mapoly0100s0034 [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN18.170.7753
16 Mapoly0058s0081 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG0387] Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain); [PF00271] Helicase conserved C-terminal domain19.440.8317
17 Mapoly0105s0061 [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)22.090.8284
18 Mapoly0076s0049 [GO:0016272] prefoldin complex; [PF02996] Prefoldin subunit; [KOG3048] Molecular chaperone Prefoldin, subunit 5; [GO:0006457] protein folding; [PTHR15111] RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN (NNX3); [PTHR15111:SF0] SUBFAMILY NOT NAMED; [GO:0051082] unfolded protein binding23.770.7194
19 Mapoly0055s0059 [GO:0000124] SAGA complex; [GO:0003712] transcription cofactor activity; [PF12090] Spt20 family; [PTHR13526] P38 INTERACTING PROTEIN28.980.8123
20 Mapoly0079s0055 [PTHR15496] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF12660] Putative zinc-finger of transcription factor IIIC complex; [PTHR15496:SF1] SUBFAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat; [PF12657] Transcription factor IIIC subunit delta N-term30.300.8012
21 Mapoly0001s0430 [PTHR21402] UNCHARACTERIZED; [PF05253] U11-48K-like CHHC zinc finger31.240.7517
22 Mapoly0118s0042 [PTHR15454:SF7] SUBFAMILY NOT NAMED; [PTHR15454] NISCHARIN RELATED31.240.7152
23 Mapoly0030s0125 [PF08429] PLU-1-like protein; [GO:0003677] DNA binding; [GO:0055114] oxidation-reduction process; [KOG1246] DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF02373] JmjC domain, hydroxylase; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PTHR10694:SF8] RETINOBLASTOMA BINDING PROTEIN-RELATED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005634] nucleus; [GO:0005622] intracellular; [PF02375] jmjN domain; [PTHR10694] JUMONJI DOMAIN CONTAINING PROTEIN; [PF02928] C5HC2 zinc finger31.300.8037
24 Mapoly0012s0107 [K13168] splicing factor, arginine/serine-rich 16; [PTHR13161:SF4] SPLICING FACTOR, ARGININE/SERINE-RICH 16; [KOG2548] SWAP mRNA splicing regulator; [PTHR13161] SPLICING FACTOR (SUPPRESSOR OF WHITE APRICOT); [PF09750] Alternative splicing regulator33.050.7993
25 Mapoly0121s0050 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12547] CCCH ZINC FINGER/TIS11-RELATED; [GO:0046872] metal ion binding33.540.7462
26 Mapoly0072s0083 [PTHR13808] CBP/P300-RELATED; [GO:0006355] regulation of transcription, DNA-dependent; [PF00569] Zinc finger, ZZ type; [PF02135] TAZ zinc finger; [GO:0003712] transcription cofactor activity; [GO:0008270] zinc ion binding; [PF08214] Histone acetylation protein; [GO:0005634] nucleus; [GO:0004402] histone acetyltransferase activity; [K04498] E1A/CREB-binding protein [EC:2.3.1.48]; [2.3.1.48] Histone acetyltransferase.; [KOG1778] CREB binding protein/P300 and related TAZ Zn-finger proteins35.510.8068
27 Mapoly0160s0011 [KOG0978] E3 ubiquitin ligase involved in syntaxin degradation; [PTHR31908] FAMILY NOT NAMED35.550.8030
28 Mapoly0092s0044 [PTHR16023:SF0] SUBFAMILY NOT NAMED; [PTHR16023] TAX1 BINDING PROTEIN-RELATED; [GO:0070772] PAS complex; [PF11916] Vacuolar protein 14 C-terminal Fig4p binding; [KOG0212] Uncharacterized conserved protein; [PF12755] Vacuolar 14 Fab1-binding region; [GO:0043550] regulation of lipid kinase activity35.890.7591
29 Mapoly0104s0040 -36.000.7717
30 Mapoly0002s0070 [GO:0008270] zinc ion binding; [PTHR23336:SF2] SUBFAMILY NOT NAMED; [PF13589] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [PTHR23336] ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.; [PF07496] CW-type Zinc Finger36.370.7587
31 Mapoly0013s0152 [PTHR12436:SF4] LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8; [KOG1861] Leucine permease transcriptional regulator; [PTHR12436] 80 KDA MCM3-ASSOCIATED PROTEIN; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family36.660.8106
32 Mapoly0001s0017 [PTHR11618:SF4] TRANSCRIPTION FACTOR IIIB; [GO:0006355] regulation of transcription, DNA-dependent; [PF00382] Transcription factor TFIIB repeat; [GO:0006352] DNA-dependent transcription, initiation; [PTHR11618] TRANSCRIPTION INITIATION FACTOR IIB-RELATED; [GO:0000126] transcription factor TFIIIB complex; [PF07741] Brf1-like TBP-binding domain; [GO:0008270] zinc ion binding; [GO:0017025] TBP-class protein binding; [GO:0006384] transcription initiation from RNA polymerase III promoter; [KOG1598] Transcription initiation factor TFIIIB, Brf1 subunit37.470.7910
33 Mapoly0005s0162 [GO:0008168] methyltransferase activity; [PTHR13107] KARYOGAMY PROTEIN KAR4-RELATED; [PF05063] MT-A70; [KOG2097] Predicted N6-adenine methylase involved in transcription regulation; [GO:0006139] nucleobase-containing compound metabolic process; [PTHR13107:SF0] SUBFAMILY NOT NAMED37.950.8031
34 Mapoly0007s0030 [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [PF02138] Beige/BEACH domain; [KOG0272] U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats); [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat38.110.7153
35 Mapoly0005s0280 [PF01803] LIM-domain binding protein38.990.7684
36 Mapoly0126s0012 -39.150.7464
37 Mapoly0001s0556 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family42.080.6993
38 Mapoly0120s0036 [PTHR21574] UNCHARACTERIZED42.860.6948
39 Mapoly0054s0112 [PTHR13620] 3-5 EXONUCLEASE; [PF00035] Double-stranded RNA binding motif; [GO:0008408] 3'-5' exonuclease activity; [PTHR13620:SF2] gb def: cg6744 gene product [drosophila melanogaster]; [PF01612] 3'-5' exonuclease; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [KOG2207] Predicted 3'-5' exonuclease43.270.7571
40 Mapoly0027s0115 [PF12656] DExH-box splicing factor binding site; [PTHR15818] G PATCH AND KOW-CONTAINING; [PTHR15818:SF2] SUBFAMILY NOT NAMED; [K13101] G patch domain and KOW motifs-containing protein44.600.7680
41 Mapoly0123s0015 [PTHR21493] CGI-141-RELATED/LIPASE CONTAINING PROTEIN; [PF01764] Lipase (class 3); [GO:0006629] lipid metabolic process45.300.6931
42 Mapoly0028s0080 [GO:0005515] protein binding; [PTHR16266] WD REPEAT DOMAIN 9; [PF00439] Bromodomain; [KOG0644] Uncharacterized conserved protein, contains WD40 repeat and BROMO domains; [PF00400] WD domain, G-beta repeat45.830.7817
43 Mapoly0113s0019 [KOG2354] RNA Polymerase C (III) 37 kDa subunit; [GO:0005634] nucleus; [PTHR12069] DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE (RNA POLYMERASE III SUBUNIT 5); [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF04801] Sin-like protein conserved region46.830.7573
44 Mapoly0069s0045 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [GO:0003910] DNA ligase (ATP) activity; [PF04679] ATP dependent DNA ligase C terminal region; [PTHR10459] DNA LIGASE; [PF01068] ATP dependent DNA ligase domain; [GO:0006281] DNA repair; [PF12706] Beta-lactamase superfamily domain; [PF04675] DNA ligase N terminus; [PF07522] DNA repair metallo-beta-lactamase; [GO:0006310] DNA recombination; [KOG0967] ATP-dependent DNA ligase I47.740.7608
45 Mapoly0012s0015 [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED48.170.7547
46 Mapoly0025s0094 [PTHR22970] FAMILY NOT NAMED48.500.7034
47 Mapoly0060s0062 [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10782] ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN; [GO:0008270] zinc ion binding; [PF02891] MIZ/SP-RING zinc finger; [GO:0003676] nucleic acid binding; [PF02037] SAP domain49.840.7943
48 Mapoly0014s0099 [PTHR22100] FAMILY NOT NAMED; [PF07814] Wings apart-like protein regulation of heterochromatin50.200.7940
49 Mapoly0001s0027 [PF01471] Putative peptidoglycan binding domain50.730.6665
50 Mapoly0003s0203 -52.820.6533
Showing 1 to 50 of 200 records
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