Guide Gene

Gene ID
Mapoly0051s0089
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003677] DNA binding; [K03013] DNA-directed RNA polymerases I, II, and III subunit RPABC1; [PF03871] RNA polymerase Rpb5, N-terminal domain; [PTHR10535] FAMILY NOT NAMED; [GO:0005634] nucleus; [GO:0006351] transcription, DNA-dependent; [PF01191] RNA polymerase Rpb5, C-terminal domain; [GO:0003899] DNA-directed RNA polymerase activity; [KOG3218] RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0051s0089 [GO:0003677] DNA binding; [K03013] DNA-directed RNA polymerases I, II, and III subunit RPABC1; [PF03871] RNA polymerase Rpb5, N-terminal domain; [PTHR10535] FAMILY NOT NAMED; [GO:0005634] nucleus; [GO:0006351] transcription, DNA-dependent; [PF01191] RNA polymerase Rpb5, C-terminal domain; [GO:0003899] DNA-directed RNA polymerase activity; [KOG3218] RNA polymerase, 25-kDa subunit (common to polymerases I, II and III) 0.00 1.0000
1 Mapoly0169s0017 -1.000.7892
2 Mapoly0043s0065 [KOG1534] Putative transcription factor FET5; [GO:0000166] nucleotide binding; [K06883] 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]; [PTHR21231] XPA-BINDING PROTEIN 1-RELATED; [PTHR21231:SF4] PRYA1876; [PF03029] Conserved hypothetical ATP binding protein3.460.7685
3 Mapoly0036s0096 [K12181] COP9 signalosome complex subunit 8; [PTHR13339] COP9 SIGNALOSOME COMPLEX SUBUNIT 8; [PF10075] COP9 signalosome, subunit CSN8; [KOG4414] COP9 signalosome, subunit CSN83.870.7414
4 Mapoly0180s0006 [GO:0055114] oxidation-reduction process; [GO:0008270] zinc ion binding; [PF08240] Alcohol dehydrogenase GroES-like domain; [GO:0016491] oxidoreductase activity; [PF00107] Zinc-binding dehydrogenase; [PTHR11695] ALCOHOL DEHYDROGENASE RELATED; [KOG0024] Sorbitol dehydrogenase4.000.7610
5 Mapoly0028s0032 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [K12733] peptidyl-prolyl cis-trans isomerase-like 1 [EC:5.2.1.8]; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [KOG0881] Cyclophilin type peptidyl-prolyl cis-trans isomerase4.690.7846
6 Mapoly0049s0104 [GO:0005840] ribosome; [PF00238] Ribosomal protein L14p/L23e; [K02874] large subunit ribosomal protein L14; [GO:0003735] structural constituent of ribosome; [PTHR11761:SF3] 50S RIBOSOMAL PROTEIN L14; [KOG0901] 60S ribosomal protein L14/L17/L23; [PTHR11761] 50S/60S RIBOSOMAL PROTEIN L14/L23; [GO:0006412] translation4.900.7779
7 Mapoly0080s0014 [PTHR12786:SF1] UNCHARACTERIZED; [PTHR12786] SPLICING FACTOR SF3A-RELATED; [PF13019] Telomere stability and silencing6.160.7343
8 Mapoly0109s0020 [KOG4172] Predicted E3 ubiquitin ligase; [PF13920] Zinc finger, C3HC4 type (RING finger)7.070.7671
9 Mapoly0001s0392 [KOG0121] Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily); [GO:0000339] RNA cap binding; [GO:0045292] mRNA cis splicing, via spliceosome; [K12883] nuclear cap-binding protein subunit 2; [GO:0003676] nucleic acid binding; [GO:0005846] nuclear cap binding complex; [PTHR18847] 20 KD NUCLEAR CAP BINDING PROTEIN; [PTHR18847:SF0] SUBFAMILY NOT NAMED; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)7.750.7652
10 Mapoly0037s0047 [K11416] mono-ADP-ribosyltransferase sirtuin 6 [EC:2.4.2.31]; [PF02146] Sir2 family; [GO:0070403] NAD+ binding; [2.4.2.31] NAD(+)--protein-arginine ADP-ribosyltransferase.; [PTHR11085] CHROMATIN REGULATORY PROTEIN SIR2; [KOG1905] Class IV sirtuins (SIR2 family)7.940.7582
11 Mapoly0009s0114 [GO:0009058] biosynthetic process; [PF03088] Strictosidine synthase; [GO:0016844] strictosidine synthase activity; [KOG1520] Predicted alkaloid synthase/Surface mucin Hemomucin; [PTHR10426] STRICTOSIDINE SYNTHASE-RELATED9.540.7615
12 Mapoly0080s0073 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [GO:0046872] metal ion binding; [PF10354] Domain of unknown function (DUF2431)9.540.7488
13 Mapoly0114s0041 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [KOG0879] U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [K09567] peptidyl-prolyl isomerase H (cyclophilin H) [EC:5.2.1.8]; [PTHR11071:SF58] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H, PPIH10.490.7548
14 Mapoly0096s0048 [GO:0030915] Smc5-Smc6 complex; [PTHR21330] UNCHARACTERIZED; [GO:0019789] SUMO ligase activity; [PF11789] Zinc-finger of the MIZ type in Nse subunit; [GO:0000724] double-strand break repair via homologous recombination11.220.7347
15 Mapoly0075s0044 -11.490.7198
16 Mapoly0080s0084 [GO:0019773] proteasome core complex, alpha-subunit complex; [PTHR11599:SF14] PROTEASOME SUBUNIT ALPHA TYPE 5; [GO:0051603] proteolysis involved in cellular protein catabolic process; [KOG0176] 20S proteasome, regulatory subunit alpha type PSMA5/PUP2; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0004175] endopeptidase activity; [GO:0004298] threonine-type endopeptidase activity; [PF10584] Proteasome subunit A N-terminal signature; [K02729] 20S proteasome subunit alpha 5 [EC:3.4.25.1]; [GO:0005839] proteasome core complex; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA14.830.7252
17 Mapoly0041s0133 [PF01426] BAH domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PTHR12505] PHD FINGER TRANSCRIPTION FACTOR15.810.7163
18 Mapoly0091s0034 [PF13516] Leucine Rich repeat; [PTHR24106] FAMILY NOT NAMED16.430.6900
19 Mapoly0020s0069 [GO:0003677] DNA binding; [PTHR11239:SF1] DNA-DIRECTED RNA POLYMERASE II; [KOG2691] RNA polymerase II subunit 9; [PF02150] RNA polymerases M/15 Kd subunit; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PTHR11239] DNA-DIRECTED RNA POLYMERASE19.340.7537
20 Mapoly0061s0113 [PTHR12692] DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE-RELATED; [PF04756] OST3 / OST6 family; [KOG2603] Oligosaccharyltransferase, gamma subunit; [PTHR12692:SF0] SUBFAMILY NOT NAMED19.390.6958
21 Mapoly0007s0061 [KOG1434] Meiotic recombination protein Dmc1; [PTHR22942] RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER; [K10869] RAD51-like protein 1; [PTHR22942:SF15] DNA REPAIR PROTEIN RAD51 HOMOLOG 2, R51H2; [PF08423] Rad5119.420.7072
22 Mapoly0153s0040 [PTHR25040] FAMILY NOT NAMED; [PF00226] DnaJ domain21.490.6677
23 Mapoly0005s0179 [K11877] proteasome assembly chaperone 3; [PF10178] Uncharacterised conserved protein (DUF2372); [KOG4828] Uncharacterized conserved protein; [PTHR31051] FAMILY NOT NAMED21.980.7250
24 Mapoly0060s0011 [GO:0034314] Arp2/3 complex-mediated actin nucleation; [KOG1876] Actin-related protein Arp2/3 complex, subunit ARPC4; [GO:0030041] actin filament polymerization; [GO:0005856] cytoskeleton; [GO:0005885] Arp2/3 protein complex; [PTHR22629] ARP2/3 COMPLEX 20 KD SUBUNIT; [PF05856] ARP2/3 complex 20 kDa subunit (ARPC4); [K05755] actin related protein 2/3 complex, subunit 422.580.6569
25 Mapoly0008s0139 [GO:0005524] ATP binding; [KOG0727] 26S proteasome regulatory complex, ATPase RPT3; [PTHR23073] 26S PROTEASE REGULATORY SUBUNIT; [K03063] 26S proteasome regulatory subunit T3; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23073:SF8] 26S PROTEASE REGULATORY SUBUNIT 6B23.370.6984
26 Mapoly0005s0155 [PF03517] Regulator of volume decrease after cellular swelling; [GO:0006821] chloride transport; [GO:0005829] cytosol; [GO:0005886] plasma membrane; [GO:0006884] cell volume homeostasis; [K05019] chloride channel, nucleotide-sensitive, 1A; [GO:0034709] methylosome; [GO:0034715] pICln-Sm protein complex; [KOG3238] Chloride ion current inducer protein; [PTHR21399] CHLORIDE CONDUCTANCE REGULATORY PROTEIN ICLN; [GO:0000387] spliceosomal snRNP assembly23.490.7504
27 Mapoly0148s0020 [GO:0016758] transferase activity, transferring hexosyl groups; [PF00201] UDP-glucoronosyl and UDP-glucosyl transferase; [K12356] coniferyl-alcohol glucosyltransferase [EC:2.4.1.111]; [PTHR11926] GLUCOSYL/GLUCURONOSYL TRANSFERASES; [GO:0008152] metabolic process; [2.4.1.111] Coniferyl-alcohol glucosyltransferase.; [KOG1192] UDP-glucuronosyl and UDP-glucosyl transferase23.620.6613
28 Mapoly0001s0139 [K06694] 26S proteasome non-ATPase regulatory subunit 10; [GO:0005515] protein binding; [PF00023] Ankyrin repeat; [KOG4412] 26S proteasome regulatory complex, subunit PSMD10; [PF12796] Ankyrin repeats (3 copies); [PTHR24198] ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN26.150.6850
29 Mapoly0004s0118 [KOG0121] Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily); [PTHR15241] TRANSFORMER-2-RELATED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)26.700.7064
30 Mapoly0004s0132 -26.700.7189
31 Mapoly0085s0078 [GO:0005524] ATP binding; [PTHR23073] 26S PROTEASE REGULATORY SUBUNIT; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23073:SF7] 26S PROTEASE REGULATORY SUBUNIT 6A; [K03065] 26S proteasome regulatory subunit T5; [KOG0652] 26S proteasome regulatory complex, ATPase RPT530.740.7042
32 Mapoly0001s0421 [KOG4178] Soluble epoxide hydrolase; [PTHR10992] ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN; [PF12697] Alpha/beta hydrolase family32.190.7006
33 Mapoly0051s0070 [PF13920] Zinc finger, C3HC4 type (RING finger)32.730.6432
34 Mapoly0031s0139 [GO:0005524] ATP binding; [PTHR23073] 26S PROTEASE REGULATORY SUBUNIT; [KOG0729] 26S proteasome regulatory complex, ATPase RPT1; [PF00004] ATPase family associated with various cellular activities (AAA); [K03061] 26S proteasome regulatory subunit T1; [PTHR23073:SF13] 26S PROTEASE REGULATORY SUBUNIT 733.940.7020
35 Mapoly0004s0134 -34.790.6513
36 Mapoly0075s0017 [GO:0006825] copper ion transport; [PF05051] Cytochrome C oxidase copper chaperone (COX17); [PTHR16719] CYTOCHROME C OXIDASE COPPER CHAPERONE; [GO:0005507] copper ion binding; [GO:0005758] mitochondrial intermembrane space; [K02260] cytochrome c oxidase subunit XVII assembly protein; [GO:0016531] copper chaperone activity35.500.6706
37 Mapoly0071s0062 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [KOG0880] Peptidyl-prolyl cis-trans isomerase; [PTHR11071:SF17] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE36.660.6606
38 Mapoly0001s0062 [KOG3385] V-SNARE; [K08506] syntaxin of plants SYP7; [GO:0005515] protein binding; [PTHR12380:SF19] SUBFAMILY NOT NAMED; [PTHR12380] SYNTAXIN; [PF05739] SNARE domain37.340.7368
39 Mapoly0065s0031 [GO:0042393] histone binding; [PF12165] Domain of unknown function (DUF3594); [GO:0006355] regulation of transcription, DNA-dependent; [PTHR12321] CPG BINDING PROTEIN38.390.6713
40 Mapoly0140s0033 [GO:0005524] ATP binding; [KOG1187] Serine/threonine protein kinase; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE39.500.7065
41 Mapoly0037s0122 [PTHR12777] SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2; [KOG3459] Small nuclear ribonucleoprotein (snRNP) Sm core protein; [GO:0030532] small nuclear ribonucleoprotein complex; [K11096] small nuclear ribonucleoprotein D2; [PF01423] LSM domain; [GO:0008380] RNA splicing39.770.7445
42 Mapoly0029s0049 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0016602] CCAAT-binding factor complex; [KOG1657] CCAAT-binding factor, subunit C (HAP5); [GO:0043565] sequence-specific DNA binding; [PF00808] Histone-like transcription factor (CBF/NF-Y) and archaeal histone; [GO:0003700] sequence-specific DNA binding transcription factor activity; [PTHR10252:SF8] TRANSCRIPTIONAL ACTIVATOR HAP5; [GO:0005622] intracellular; [PTHR10252] HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED40.000.7405
43 Mapoly0162s0020 -40.190.6641
44 Mapoly0189s0018 -41.950.6993
45 Mapoly0019s0015 [GO:0051603] proteolysis involved in cellular protein catabolic process; [K02732] 20S proteasome subunit beta 6 [EC:3.4.25.1]; [GO:0004298] threonine-type endopeptidase activity; [KOG0179] 20S proteasome, regulatory subunit beta type PSMB1/PRE7; [GO:0005839] proteasome core complex; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA42.050.7135
46 Mapoly0076s0002 [PTHR14854] NIF3L1BP1 PROTEIN-RELATED; [KOG3215] Uncharacterized conserved protein; [GO:0000445] THO complex part of transcription export complex; [GO:0006397] mRNA processing; [K13176] THO complex subunit 7; [PF05615] Tho complex subunit 742.360.6993
47 Mapoly0144s0007 [GO:0005515] protein binding; [PTHR31718] FAMILY NOT NAMED; [PF01477] PLAT/LH2 domain43.080.6750
48 Mapoly0047s0084 [PTHR22939] SERINE PROTEASE FAMILY S1C HTRA-RELATED; [3.4.21.-] Serine endopeptidases.; [K01362] lactocepin [EC:3.4.21.96]; [GO:0005515] protein binding; [PF13180] PDZ domain; [KOG1320] Serine protease; [PF13365] Trypsin-like peptidase domain45.560.5632
49 Mapoly0053s0095 [GO:0019773] proteasome core complex, alpha-subunit complex; [GO:0051603] proteolysis involved in cellular protein catabolic process; [PTHR11599:SF15] PROTEASOME SUBUNIT ALPHA TYPE 7; [KOG0183] 20S proteasome, regulatory subunit alpha type PSMA7/PRE6; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0004175] endopeptidase activity; [GO:0004298] threonine-type endopeptidase activity; [PF10584] Proteasome subunit A N-terminal signature; [GO:0005839] proteasome core complex; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [K02731] 20S proteasome subunit alpha 4 [EC:3.4.25.1]; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA45.960.6978
50 Mapoly0138s0042 [GO:0019773] proteasome core complex, alpha-subunit complex; [GO:0051603] proteolysis involved in cellular protein catabolic process; [K02725] 20S proteasome subunit alpha 6 [EC:3.4.25.1]; [KOG0863] 20S proteasome, regulatory subunit alpha type PSMA1/PRE5; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0004175] endopeptidase activity; [GO:0004298] threonine-type endopeptidase activity; [PTHR11599:SF12] PROTEASOME SUBUNIT ALPHA TYPE 1; [PF10584] Proteasome subunit A N-terminal signature; [GO:0005839] proteasome core complex; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA46.370.6938
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