Guide Gene

Gene ID
Mapoly0060s0011
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0034314] Arp2/3 complex-mediated actin nucleation; [KOG1876] Actin-related protein Arp2/3 complex, subunit ARPC4; [GO:0030041] actin filament polymerization; [GO:0005856] cytoskeleton; [GO:0005885] Arp2/3 protein complex; [PTHR22629] ARP2/3 COMPLEX 20 KD SUBUNIT; [PF05856] ARP2/3 complex 20 kDa subunit (ARPC4); [K05755] actin related protein 2/3 complex, subunit 4

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0060s0011 [GO:0034314] Arp2/3 complex-mediated actin nucleation; [KOG1876] Actin-related protein Arp2/3 complex, subunit ARPC4; [GO:0030041] actin filament polymerization; [GO:0005856] cytoskeleton; [GO:0005885] Arp2/3 protein complex; [PTHR22629] ARP2/3 COMPLEX 20 KD SUBUNIT; [PF05856] ARP2/3 complex 20 kDa subunit (ARPC4); [K05755] actin related protein 2/3 complex, subunit 4 0.00 1.0000
1 Mapoly0071s0062 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [KOG0880] Peptidyl-prolyl cis-trans isomerase; [PTHR11071:SF17] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE3.870.6826
2 Mapoly0068s0081 [KOG1692] Putative cargo transport protein EMP24 (p24 protein family); [GO:0016021] integral to membrane; [GO:0006810] transport; [PF01105] emp24/gp25L/p24 family/GOLD; [PTHR22811] TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN4.240.6998
3 Mapoly0169s0017 -7.870.6954
4 Mapoly0102s0010 [PF10235] Microtubule-associated protein CRIPT; [KOG3476] Microtubule-associated protein CRIPT; [PTHR11800] DNA-DIRECTED RNA POLYMERASE12.170.6786
5 Mapoly0175s0005 [GO:0008152] metabolic process; [KOG4192] Uncharacterized conserved protein; [GO:0016846] carbon-sulfur lyase activity; [PF04828] Glutathione-dependent formaldehyde-activating enzyme12.850.6364
6 Mapoly0020s0022 [PTHR15414] OS-9-RELATED; [K10088] protein OS-9; [PF07915] Glucosidase II beta subunit-like protein12.960.6415
7 Mapoly0006s0265 -13.750.6164
8 Mapoly0031s0139 [GO:0005524] ATP binding; [PTHR23073] 26S PROTEASE REGULATORY SUBUNIT; [KOG0729] 26S proteasome regulatory complex, ATPase RPT1; [PF00004] ATPase family associated with various cellular activities (AAA); [K03061] 26S proteasome regulatory subunit T1; [PTHR23073:SF13] 26S PROTEASE REGULATORY SUBUNIT 718.490.6549
9 Mapoly0041s0098 [PTHR21354] UNCHARACTERIZED; [PTHR21354:SF0] SUBFAMILY NOT NAMED18.970.6414
10 Mapoly0051s0089 [GO:0003677] DNA binding; [K03013] DNA-directed RNA polymerases I, II, and III subunit RPABC1; [PF03871] RNA polymerase Rpb5, N-terminal domain; [PTHR10535] FAMILY NOT NAMED; [GO:0005634] nucleus; [GO:0006351] transcription, DNA-dependent; [PF01191] RNA polymerase Rpb5, C-terminal domain; [GO:0003899] DNA-directed RNA polymerase activity; [KOG3218] RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)22.580.6569
11 Mapoly0033s0006 -23.920.6157
12 Mapoly0003s0306 [3.4.16.-] Serine-type carboxypeptidases.; [PF00450] Serine carboxypeptidase; [K09646] serine carboxypeptidase 1 [EC:3.4.16.-]; [KOG1283] Serine carboxypeptidases; [PTHR11802] SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE; [GO:0004185] serine-type carboxypeptidase activity; [GO:0006508] proteolysis; [PTHR11802:SF3] RETINOID-INDUCIBLE SERINE CARBOXYPEPTIDASE (SERINE CARBOXYPEPTIDASE 1)30.400.5808
13 Mapoly0011s0025 [PTHR31592] FAMILY NOT NAMED; [PF14802] TMEM192 family32.590.5866
14 Mapoly0093s0047 [PF01239] Protein prenyltransferase alpha subunit repeat; [2.5.1.58] Protein farnesyltransferase.; [GO:0008318] protein prenyltransferase activity; [GO:0018342] protein prenylation; [2.5.1.59] Protein geranylgeranyltransferase type I.; [K05955] protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [EC:2.5.1.58 2.5.1.59]; [PTHR11129] PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT; [KOG0530] Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit; [PTHR11129:SF1] PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT32.940.6074
15 Mapoly0029s0150 [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0417] Ubiquitin-protein ligase; [K10689] peroxin-4 [EC:6.3.2.19]; [PTHR24067:SF56] UBIQUITIN CARRIER PROTEIN; [PF00179] Ubiquitin-conjugating enzyme33.170.6147
16 Mapoly0015s0116 [PTHR15858] UNCHARACTERIZED; [PTHR15858:SF0] SUBFAMILY NOT NAMED; [PF08571] Yos1-like; [KOG4779] Predicted membrane protein34.070.6117
17 Mapoly0006s0079 [K04798] prefoldin beta subunit; [GO:0016272] prefoldin complex; [PTHR21431] PREFOLDIN SUBUNIT 6; [PTHR21431:SF0] SUBFAMILY NOT NAMED; [GO:0006457] protein folding; [KOG3478] Prefoldin subunit 6, KE2 family; [GO:0051082] unfolded protein binding; [PF01920] Prefoldin subunit37.420.6524
18 Mapoly0080s0030 [KOG1532] GTPase XAB1, interacts with DNA repair protein XPA; [GO:0000166] nucleotide binding; [K06883] 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]; [PTHR21231] XPA-BINDING PROTEIN 1-RELATED; [PF03029] Conserved hypothetical ATP binding protein41.580.5402
19 Mapoly0024s0086 [PTHR21022:SF1] PREPHENATE DEHYDRATASE (P PROTEIN); [KOG2797] Prephenate dehydratase; [GO:0004664] prephenate dehydratase activity; [GO:0009094] L-phenylalanine biosynthetic process; [PF00800] Prephenate dehydratase; [PTHR21022] PREPHENATE DEHYDRATASE (P PROTEIN)42.850.6011
20 Mapoly0001s0053 -43.710.6279
21 Mapoly0013s0171 [PTHR30603] RNA POLYMERASE SIGMA FACTOR RPO; [PF03661] Uncharacterised protein family (UPF0121); [GO:0016021] integral to membrane46.580.6272
22 Mapoly0030s0026 [GO:0005840] ribosome; [GO:0003735] structural constituent of ribosome; [PTHR11545:SF6] MITOCHONDRIAL RIBOSOMAL PROTEIN L13; [KOG3203] Mitochondrial/chloroplast ribosomal protein L13; [PTHR11545] RIBOSOMAL PROTEIN L13; [GO:0006412] translation; [PF00572] Ribosomal protein L13; [K02871] large subunit ribosomal protein L1346.960.6269
23 Mapoly0003s0072 [K06693] 26S proteasome non-ATPase regulatory subunit 9; [PTHR12651] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9; [PTHR12651:SF1] 26S PROTEASOME REGULATORY SUBUNIT P27; [KOG3129] 26S proteasome regulatory complex, subunit PSMD947.010.6387
24 Mapoly0005s0148 [PTHR21250:SF0] SUBFAMILY NOT NAMED; [KOG4032] Uncharacterized conserved protein; [PTHR21250] UNCHARACTERIZED; [PF10273] Pre-rRNA-processing protein TSR247.910.5397
25 Mapoly0026s0018 [GO:0016787] hydrolase activity; [3.6.1.19] Nucleoside-triphosphate diphosphatase.; [PF01725] Ham1 family; [KOG3222] Inosine triphosphate pyrophosphatase; [PTHR11067] INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN; [K01519] nucleoside-triphosphate pyrophosphatase [EC:3.6.1.19]49.190.5962
26 Mapoly0011s0153 [PTHR21181] FAMILY NOT NAMED; [KOG3918] Predicted membrane protein; [PF10270] Membrane magnesium transporter49.700.6201
27 Mapoly0084s0063 -50.750.5616
28 Mapoly0005s0226 [PTHR11043:SF1] ZETA-COAT PROTEIN; [PTHR11043] ZETA-COAT PROTEIN; [PF01217] Clathrin adaptor complex small chain52.150.5700
29 Mapoly0033s0042 [PTHR13281:SF0] SUBFAMILY NOT NAMED; [KOG4478] Uncharacterized membrane protein; [PTHR13281] UNCHARACTERIZED; [PF06979] Protein of unknown function (DUF1301)53.570.5679
30 Mapoly0061s0091 [PTHR10229:SF1] GTP-BINDING PROTEIN HFLX; [PF01926] 50S ribosome-binding GTPase; [KOG0410] Predicted GTP binding protein; [PTHR10229] GTP-BINDING PROTEIN HFLX; [GO:0005525] GTP binding55.700.5515
31 Mapoly0019s0015 [GO:0051603] proteolysis involved in cellular protein catabolic process; [K02732] 20S proteasome subunit beta 6 [EC:3.4.25.1]; [GO:0004298] threonine-type endopeptidase activity; [KOG0179] 20S proteasome, regulatory subunit beta type PSMB1/PRE7; [GO:0005839] proteasome core complex; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA56.530.6232
32 Mapoly0036s0156 [PTHR15857] COMM DOMAIN CONTAINING PROTEIN 2; [PF07258] HCaRG protein58.970.5878
33 Mapoly0012s0096 -59.130.5998
34 Mapoly0031s0028 -61.600.6157
35 Mapoly0091s0034 [PF13516] Leucine Rich repeat; [PTHR24106] FAMILY NOT NAMED62.050.5735
36 Mapoly0066s0045 [PF05773] RWD domain; [PTHR21275] UNCHARACTERIZED; [GO:0005515] protein binding; [KOG4018] Uncharacterized conserved protein, contains RWD domain64.500.5532
37 Mapoly0073s0081 [K11876] proteasome assembly chaperone 2; [KOG3112] Uncharacterized conserved protein; [PF09754] PAC2 family; [PTHR12970] TUMOR NECROSIS FACTOR SUPERFAMILY, MEMBER 5-INDUCED PROTEIN 1 (CLAST3)65.540.6309
38 Mapoly0061s0032 [GO:0016020] membrane; [PF07933] Protein of unknown function (DUF1681); [PTHR12847:SF4] SUBFAMILY NOT NAMED; [KOG2500] Uncharacterized conserved protein; [GO:0006897] endocytosis; [PTHR12847] ATP-BINDING CASSETTE (ABC) TRANSPORTER-RELATED67.750.6212
39 Mapoly0048s0027 [PF12681] Glyoxalase-like domain67.840.5998
40 Mapoly0020s0171 [KOG2388] UDP-N-acetylglucosamine pyrophosphorylase; [GO:0070569] uridylyltransferase activity; [GO:0008152] metabolic process; [K12447] UDP-sugar pyrophosphorylase [EC:2.7.7.64]; [PF01704] UTP--glucose-1-phosphate uridylyltransferase; [PTHR11952] UDP- GLUCOSE PYROPHOSPHORYLASE; [2.7.7.64] UTP-monosaccharide-1-phosphate uridylyltransferase.68.060.5117
41 Mapoly0072s0010 [KOG1575] Voltage-gated shaker-like K+ channel, subunit beta/KCNAB; [PTHR11732:SF14] POTASSIUM CHANNEL BETA; [PTHR11732] ALDO/KETO REDUCTASE; [PF00248] Aldo/keto reductase family71.250.5613
42 Mapoly0011s0013 [PTHR13264:SF5] SUBFAMILY NOT NAMED; [K12868] pre-mRNA-splicing factor SYF2; [PTHR13264] GCIP-INTERACTING PROTEIN P29; [KOG2609] Cyclin D-interacting protein GCIP; [PF08231] SYF2 splicing factor71.460.5729
43 Mapoly0028s0032 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [K12733] peptidyl-prolyl cis-trans isomerase-like 1 [EC:5.2.1.8]; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [KOG0881] Cyclophilin type peptidyl-prolyl cis-trans isomerase76.370.6153
44 Mapoly0029s0123 [PTHR14269] CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED; [KOG1618] Predicted phosphatase; [PTHR14269:SF4] UNCHARACTERIZED; [PF13344] Haloacid dehalogenase-like hydrolase; [PF13242] HAD-hyrolase-like79.180.5885
45 Mapoly0092s0011 [PF06093] Spt4/RpoE2 zinc finger; [KOG3490] Transcription elongation factor SPT4; [PTHR12882:SF0] SUBFAMILY NOT NAMED; [PTHR12882] SUPPRESSOR OF TY 479.620.6167
46 Mapoly0034s0060 [4.4.1.14] 1-aminocyclopropane-1-carboxylate synthase.; [GO:0009058] biosynthetic process; [GO:0030170] pyridoxal phosphate binding; [KOG0256] 1-aminocyclopropane-1-carboxylate synthase, and related proteins; [K01762] 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14]; [PF00155] Aminotransferase class I and II; [PTHR11751] SUBGROUP I AMINOTRANSFERASE RELATED80.110.5614
47 Mapoly0005s0254 [GO:0051603] proteolysis involved in cellular protein catabolic process; [KOG0173] 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1; [PTHR11599:SF44] SUBFAMILY NOT NAMED; [GO:0004298] threonine-type endopeptidase activity; [GO:0005839] proteasome core complex; [K02739] 20S proteasome subunit beta 2 [EC:3.4.25.1]; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA80.800.5933
48 Mapoly0006s0175 [PF13233] Complex1_LYR-like81.140.6093
49 Mapoly0043s0065 [KOG1534] Putative transcription factor FET5; [GO:0000166] nucleotide binding; [K06883] 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]; [PTHR21231] XPA-BINDING PROTEIN 1-RELATED; [PTHR21231:SF4] PRYA1876; [PF03029] Conserved hypothetical ATP binding protein81.380.5973
50 Mapoly0073s0075 [KOG4624] Uncharacterized conserved protein; [PF08583] Cytochrome c oxidase biogenesis protein Cmc1 like84.990.5674
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