Guide Gene

Gene ID
Mapoly0035s0067
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0050660] flavin adenine dinucleotide binding; [GO:0055114] oxidation-reduction process; [PTHR11082:SF4] TRNA-DIHYDROURIDINE SYNTHASE 2; [PF01207] Dihydrouridine synthase (Dus); [KOG2335] tRNA-dihydrouridine synthase; [GO:0008033] tRNA processing; [PTHR11082] TRNA-DIHYDROURIDINE SYNTHASE; [GO:0017150] tRNA dihydrouridine synthase activity; [K05543] tRNA-dihydrouridine synthase 2 [EC:1.-.-.-]; [1.-.-.-] Oxidoreductases.

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0035s0067 [GO:0050660] flavin adenine dinucleotide binding; [GO:0055114] oxidation-reduction process; [PTHR11082:SF4] TRNA-DIHYDROURIDINE SYNTHASE 2; [PF01207] Dihydrouridine synthase (Dus); [KOG2335] tRNA-dihydrouridine synthase; [GO:0008033] tRNA processing; [PTHR11082] TRNA-DIHYDROURIDINE SYNTHASE; [GO:0017150] tRNA dihydrouridine synthase activity; [K05543] tRNA-dihydrouridine synthase 2 [EC:1.-.-.-]; [1.-.-.-] Oxidoreductases. 0.00 1.0000
1 Mapoly0185s0018 [PF12171] Zinc-finger double-stranded RNA-binding; [PTHR20863] ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED; [KOG3408] U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing; [PTHR20863:SF2] ZINC FINGER PROTEIN 593-RELATED3.460.8704
2 Mapoly0008s0090 [GO:0003723] RNA binding; [KOG3273] Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly; [K11884] RNA-binding protein PNO1; [PF00013] KH domain; [PTHR12826] FAMILY NOT NAMED5.000.8534
3 Mapoly0032s0082 [PF00009] Elongation factor Tu GTP binding domain; [GO:0003924] GTPase activity; [PTHR23115:SF69] PREDICTED: SIMILAR TO EFTUD2 PROTEIN, PARTIAL; [PTHR23115] TRANSLATION FACTOR; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 25.660.8301
4 Mapoly0090s0083 [PF01585] G-patch domain; [GO:0003676] nucleic acid binding; [PTHR23149] G PATCH DOMAIN CONTAINING PROTEIN6.000.7816
5 Mapoly0001s0287 [KOG0645] WD40 repeat protein; [PTHR19920:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [PTHR19920] WD40 PROTEIN CIAO1; [PF00400] WD domain, G-beta repeat7.480.7641
6 Mapoly1100s0002 [GO:0042254] ribosome biogenesis; [KOG1723] 60s ribosomal protein L30 isolog; [K02896] large subunit ribosomal protein L24e; [PF01246] Ribosomal protein L24e; [PTHR10792] 60S RIBOSOMAL PROTEIN L247.550.8865
7 Mapoly0024s0084 [PTHR11711] ADP RIBOSYLATION FACTOR-RELATED; [PF00025] ADP-ribosylation factor family; [KOG0076] GTP-binding ADP-ribosylation factor-like protein yARL3; [PTHR11711:SF19] ARF-RELATED PROTEIN 1, ARFRP1; [GO:0005525] GTP binding8.060.8200
8 Mapoly0059s0023 [PTHR23365] POLY-A BINDING PROTEIN 2; [KOG4208] Nucleolar RNA-binding protein NIFK; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)9.700.8713
9 Mapoly0045s0142 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding11.140.8686
10 Mapoly0001s0306 [GO:0055114] oxidation-reduction process; [KOG0069] Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily); [PTHR10996] 2-HYDROXYACID DEHYDROGENASE-RELATED; [GO:0016616] oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; [GO:0008152] metabolic process; [GO:0051287] NAD binding; [PF02826] D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; [PF00389] D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain13.190.8532
11 Mapoly0068s0040 [PTHR23284] PROLACTIN REGULATORY ELEMENT BINDING PROTEIN; [K14003] prolactin regulatory element-binding protein; [GO:0005515] protein binding; [KOG0771] Prolactin regulatory element-binding protein/Protein transport protein SEC12p; [PF00400] WD domain, G-beta repeat13.710.7387
12 Mapoly0035s0075 -16.160.7942
13 Mapoly0117s0008 [GO:0016758] transferase activity, transferring hexosyl groups; [PF00201] UDP-glucoronosyl and UDP-glucosyl transferase; [PTHR11926] GLUCOSYL/GLUCURONOSYL TRANSFERASES; [GO:0008152] metabolic process; [KOG1192] UDP-glucuronosyl and UDP-glucosyl transferase24.600.7269
14 Mapoly0160s0020 [KOG1404] Alanine-glyoxylate aminotransferase AGT2; [PTHR11986] AMINOTRANSFERASE CLASS III; [GO:0030170] pyridoxal phosphate binding; [GO:0008483] transaminase activity; [PTHR11986:SF49] 4-AMINOBUTYRATE AMINOTRANSFERASE; [PF00202] Aminotransferase class-III27.200.7801
15 Mapoly0001s0189 [PF06799] Protein of unknown function (DUF1230)30.170.8194
16 Mapoly0124s0041 [GO:0005840] ribosome; [PF00416] Ribosomal protein S13/S18; [GO:0003723] RNA binding; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [KOG3311] Ribosomal protein S18; [PTHR10871] 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18; [GO:0006412] translation; [K02964] small subunit ribosomal protein S18e30.510.8330
17 Mapoly0039s0072 -30.850.7959
18 Mapoly0143s0026 [PF12681] Glyoxalase-like domain; [PTHR31071] FAMILY NOT NAMED33.090.8189
19 Mapoly0076s0047 [GO:0008124] 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; [KOG4073] Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1; [GO:0006729] tetrahydrobiopterin biosynthetic process; [PTHR12599] PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE; [PF01329] Pterin 4 alpha carbinolamine dehydratase33.410.7406
20 Mapoly0510s0001 -36.000.7962
21 Mapoly0026s0068 [PTHR24414] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF01344] Kelch motif; [PF00646] F-box domain36.860.6061
22 Mapoly0016s0091 [GO:0005840] ribosome; [K02949] small subunit ribosomal protein S11e; [KOG1728] 40S ribosomal protein S11; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PF00366] Ribosomal protein S17; [GO:0006412] translation; [PTHR10744] 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER37.590.8256
23 Mapoly0055s0060 [GO:0003743] translation initiation factor activity; [PF01253] Translation initiation factor SUI1; [GO:0006413] translational initiation38.160.8187
24 Mapoly0033s0159 [GO:0008080] N-acetyltransferase activity; [PF00583] Acetyltransferase (GNAT) family; [PTHR23091] N-TERMINAL ACETYLTRANSFERASE38.570.7602
25 Mapoly0071s0098 [GO:0005840] ribosome; [PTHR12010] 40S RIBOSOMAL PROTEIN S29; [KOG3506] 40S ribosomal protein S29; [K02980] small subunit ribosomal protein S29e; [PF00253] Ribosomal protein S14p/S29e; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [GO:0006412] translation38.860.8234
26 Mapoly0043s0113 [KOG4771] Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis; [PTHR13243] HSPC111 PROTEIN-RELATED; [PF09420] Ribosome biogenesis protein Nop1640.120.7700
27 Mapoly0078s0013 [PTHR11721:SF3] SUBFAMILY NOT NAMED; [PF00828] Ribosomal protein L18e/L15; [PTHR11721] 60S RIBOSOMAL PROTEIN L27A; [K02900] large subunit ribosomal protein L27Ae; [KOG1742] 60s ribosomal protein L15/L2740.990.8206
28 Mapoly0095s0001 [GO:0005840] ribosome; [PTHR11517] 60S RIBOSOMAL PROTEIN L37A; [GO:0003735] structural constituent of ribosome; [PF01780] Ribosomal L37ae protein family; [GO:0005622] intracellular; [K02921] large subunit ribosomal protein L37Ae; [KOG0402] 60S ribosomal protein L37; [GO:0006412] translation41.690.8209
29 Mapoly0020s0058 [PF05383] La domain; [KOG1855] Predicted RNA-binding protein; [PTHR22792] LUPUS LA PROTEIN-RELATED42.140.7132
30 Mapoly0053s0061 -48.000.7380
31 Mapoly0127s0012 [PTHR13557:SF1] gb def: hypothetical protein xp_167260 [homo sapiens]; [PTHR13557] UNCHARACTERIZED48.960.8171
32 Mapoly0020s0123 [PTHR12642] FAMILY NOT NAMED; [PTHR12642:SF0] SUBFAMILY NOT NAMED; [KOG3163] Uncharacterized conserved protein related to ribosomal protein S8E; [PF01201] Ribosomal protein S8e51.440.8156
33 Mapoly0009s0032 [PF04278] Tic22-like family52.650.7483
34 Mapoly0095s0009 [GO:0005840] ribosome; [PF01667] Ribosomal protein S27; [GO:0003735] structural constituent of ribosome; [PTHR11594] 40S RIBOSOMAL PROTEIN S27; [GO:0005622] intracellular; [KOG1779] 40s ribosomal protein S27; [K02978] small subunit ribosomal protein S27e; [GO:0006412] translation53.670.8028
35 Mapoly0093s0077 [GO:0016020] membrane; [GO:0017004] cytochrome complex assembly; [GO:0055114] oxidation-reduction process; [PTHR31272] FAMILY NOT NAMED; [PF02683] Cytochrome C biogenesis protein transmembrane region54.390.7347
36 Mapoly0007s0088 [K08360] cytochrome b-561; [GO:0016021] integral to membrane; [KOG1619] Cytochrome b; [PTHR10106] CYTOCHROME B561-RELATED; [PF03188] Eukaryotic cytochrome b56154.660.7079
37 Mapoly0006s0241 [PF00687] Ribosomal protein L1p/L10e family; [K02865] large subunit ribosomal protein L10Ae; [PTHR23105] RIBOSOMAL PROTEIN L7AE FAMILY MEMBER; [KOG1570] 60S ribosomal protein L10A54.800.8123
38 Mapoly0029s0027 [GO:0000287] magnesium ion binding; [PF00719] Inorganic pyrophosphatase; [3.6.1.1] Inorganic diphosphatase.; [GO:0004427] inorganic diphosphatase activity; [GO:0005737] cytoplasm; [K01507] inorganic pyrophosphatase [EC:3.6.1.1]; [GO:0006796] phosphate-containing compound metabolic process; [KOG1626] Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38; [PTHR10286] INORGANIC PYROPHOSPHATASE56.410.7438
39 Mapoly0108s0049 [PF01585] G-patch domain; [GO:0003676] nucleic acid binding56.750.7088
40 Mapoly0128s0004 -57.340.7198
41 Mapoly0001s0282 [PTHR20836] DIHYDRODIPICOLINATE REDUCTASE; [GO:0055114] oxidation-reduction process; [GO:0070402] NADPH binding; [PF01113] Dihydrodipicolinate reductase, N-terminus; [K00215] dihydrodipicolinate reductase [EC:1.3.1.26]; [PF05173] Dihydrodipicolinate reductase, C-terminus; [1.3.1.26] Transferred entry: 1.17.1.8.; [GO:0009089] lysine biosynthetic process via diaminopimelate; [GO:0008839] 4-hydroxy-tetrahydrodipicolinate reductase57.970.6881
42 Mapoly0003s0161 [GO:0005840] ribosome; [PTHR11843] 40S RIBOSOMAL PROTEIN S12; [GO:0003735] structural constituent of ribosome; [KOG3406] 40S ribosomal protein S12; [GO:0005622] intracellular; [PF01248] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; [GO:0006412] translation; [K02951] small subunit ribosomal protein S12e58.990.8125
43 Mapoly0069s0078 [GO:0005840] ribosome; [PF04758] Ribosomal protein S30; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PTHR12650] 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI; [GO:0006412] translation; [KOG0009] Ubiquitin-like/40S ribosomal S30 protein fusion60.420.8025
44 Mapoly0083s0020 [GO:0005840] ribosome; [KOG1754] 40S ribosomal protein S15/S22; [PTHR11758] 30S RIBOSOMAL PROTEIN S8; [GO:0003735] structural constituent of ribosome; [K02957] small subunit ribosomal protein S15Ae; [PF00410] Ribosomal protein S8; [GO:0006412] translation60.560.8147
45 Mapoly0066s0071 -63.060.6564
46 Mapoly0008s0132 [GO:0005840] ribosome; [K02955] small subunit ribosomal protein S14e; [GO:0003735] structural constituent of ribosome; [KOG0407] 40S ribosomal protein S14; [PTHR11759] 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11; [GO:0006412] translation; [PF00411] Ribosomal protein S1166.090.7988
47 Mapoly0064s0119 [GO:0005840] ribosome; [GO:0005515] protein binding; [K02927] large subunit ribosomal protein L40e; [GO:0003735] structural constituent of ribosome; [KOG0003] Ubiquitin/60s ribosomal protein L40 fusion; [PF00240] Ubiquitin family; [PTHR10666] UBIQUITIN; [GO:0006412] translation; [PF01020] Ribosomal L40e family66.280.8029
48 Mapoly0068s0048 [PF02617] ATP-dependent Clp protease adaptor protein ClpS; [GO:0030163] protein catabolic process; [K06891] ATP-dependent Clp protease adaptor protein ClpS67.260.7434
49 Mapoly0026s0092 [PTHR24193] ANKYRIN REPEAT PROTEIN; [KOG4214] Myotrophin and similar proteins; [PF12796] Ankyrin repeats (3 copies)68.590.7696
50 Mapoly0002s0208 [PF05207] CSL zinc finger; [KOG2923] Uncharacterized conserved protein; [PTHR21454] FAMILY NOT NAMED70.650.7104
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