Guide Gene

Gene ID
Mapoly0029s0063
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR20982:SF7] RIBOSOME RECYCLING FACTOR; [PTHR20982] RIBOSOME RECYCLING FACTOR; [KOG4759] Ribosome recycling factor; [PF01765] Ribosome recycling factor; [K02838] ribosome recycling factor; [GO:0006412] translation

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0029s0063 [PTHR20982:SF7] RIBOSOME RECYCLING FACTOR; [PTHR20982] RIBOSOME RECYCLING FACTOR; [KOG4759] Ribosome recycling factor; [PF01765] Ribosome recycling factor; [K02838] ribosome recycling factor; [GO:0006412] translation 0.00 1.0000
1 Mapoly0006s0155 [GO:0003723] RNA binding; [PTHR11078] N UTILIZATION SUBSTANCE PROTEIN B-RELATED; [GO:0006355] regulation of transcription, DNA-dependent; [PF01029] NusB family; [GO:0006353] DNA-dependent transcription, termination3.320.7990
2 Mapoly0006s0297 [KOG3377] Uncharacterized conserved protein; [PF05811] Eukaryotic protein of unknown function (DUF842); [PTHR21096] UNCHARACTERIZED5.920.7419
3 Mapoly0044s0034 [PF01259] SAICAR synthetase; [KOG2835] Phosphoribosylamidoimidazole-succinocarboxamide synthase; [K01923] phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]; [6.3.2.6] Phosphoribosylaminoimidazolesuccinocarboxamide synthase.; [PTHR11609] PURINE BIOSYNTHESIS PROTEIN 6/7, PUR6/7; [PTHR11609:SF1] PURINE BIOSYNTHESIS PROTEIN 7, PUR77.480.7986
4 Mapoly0048s0059 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [PF13086] AAA domain; [PF13087] AAA domain12.250.6752
5 Mapoly0002s0141 -13.110.7487
6 Mapoly0079s0016 [GO:0005515] protein binding; [KOG3881] Uncharacterized conserved protein; [PTHR16038] NOP SEVEN ASSOCIATED PROTEIN 1; [PTHR16038:SF4] SUBFAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat13.640.7559
7 Mapoly0059s0024 -13.750.6854
8 Mapoly0132s0009 -18.000.7237
9 Mapoly0218s0008 -18.550.7336
10 Mapoly0032s0026 [GO:0008270] zinc ion binding; [KOG3277] Uncharacterized conserved protein; [PF05180] DNL zinc finger19.050.6726
11 Mapoly0028s0040 [PF01702] Queuine tRNA-ribosyltransferase; [2.4.2.29] tRNA-guanine(34) transglycosylase.; [GO:0008479] queuine tRNA-ribosyltransferase activity; [PTHR11962] QUEUINE TRNA-RIBOSYLTRANSFERASE; [GO:0008616] queuosine biosynthetic process; [K00773] queuine tRNA-ribosyltransferase [EC:2.4.2.29]; [KOG3908] Queuine-tRNA ribosyltransferase; [GO:0006400] tRNA modification19.080.6847
12 Mapoly0014s0054 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family20.400.7072
13 Mapoly0125s0018 [K05545] tRNA-dihydrouridine synthase 4 [EC:1.-.-.-]; [GO:0050660] flavin adenine dinucleotide binding; [GO:0055114] oxidation-reduction process; [PTHR11082:SF5] TRNA-DIHYDROURIDINE SYNTHASE 1; [PF01207] Dihydrouridine synthase (Dus); [KOG2335] tRNA-dihydrouridine synthase; [GO:0008033] tRNA processing; [PTHR11082] TRNA-DIHYDROURIDINE SYNTHASE; [GO:0017150] tRNA dihydrouridine synthase activity; [1.-.-.-] Oxidoreductases.21.980.6909
14 Mapoly0016s0053 [K14191] 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183]; [2.1.1.183] 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase.; [PTHR11727] DIMETHYLADENOSINE TRANSFERASE; [GO:0000154] rRNA modification; [KOG0820] Ribosomal RNA adenine dimethylase; [GO:0000179] rRNA (adenine-N6,N6-)-dimethyltransferase activity; [PF00398] Ribosomal RNA adenine dimethylase; [GO:0008649] rRNA methyltransferase activity22.980.7359
15 Mapoly0001s0503 [PF04117] Mpv17 / PMP22 family; [GO:0016021] integral to membrane; [PTHR11266] PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 (MPV17); [KOG1944] Peroxisomal membrane protein MPV17 and related proteins25.100.6014
16 Mapoly0122s0043 [PF02810] SEC-C motif26.060.7356
17 Mapoly0136s0020 [PTHR23290] UNCHARACTERIZED; [PF13659] Methyltransferase domain; [KOG3420] Predicted RNA methylase; [K07579] putative methylase26.720.6709
18 Mapoly0027s0128 [GO:0006260] DNA replication; [PTHR10302] SINGLE-STRANDED DNA-BINDING PROTEIN; [GO:0003697] single-stranded DNA binding; [PTHR10302:SF0] SINGLE-STRANDED DNA-BINDING PROTEIN; [PF00436] Single-strand binding protein family27.420.7022
19 Mapoly0005s0190 [PF06969] HemN C-terminal domain; [PF04055] Radical SAM superfamily; [1.3.99.22] Coproporphyrinogen dehydrogenase.; [PTHR13932] COPROPORPHYRINIGEN III OXIDASE; [GO:0003824] catalytic activity; [GO:0051536] iron-sulfur cluster binding; [K02495] oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]31.750.6907
20 Mapoly0021s0161 [KOG0331] ATP-dependent RNA helicase; [GO:0003723] RNA binding; [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PF08152] GUCT (NUC152) domain; [GO:0005634] nucleus; [PTHR24031:SF136] PREDICTED PROTEIN (FRAGMENT); [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding32.620.6414
21 Mapoly0051s0108 [PF11152] Protein of unknown function (DUF2930)32.830.6914
22 Mapoly0051s0025 [PF00505] HMG (high mobility group) box34.150.5906
23 Mapoly0053s0018 -34.600.6965
24 Mapoly0076s0035 [PF05773] RWD domain; [GO:0005515] protein binding; [PTHR12292] RWD DOMAIN-CONTAINING PROTEIN; [KOG4018] Uncharacterized conserved protein, contains RWD domain36.660.6463
25 Mapoly0082s0028 [K00620] glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]; [GO:0006526] arginine biosynthetic process; [2.3.1.1] Amino-acid N-acetyltransferase.; [PTHR23100:SF0] SUBFAMILY NOT NAMED; [GO:0004358] glutamate N-acetyltransferase activity; [PTHR23100] ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ; [PF01960] ArgJ family; [2.3.1.35] Glutamate N-acetyltransferase.; [KOG2786] Putative glutamate/ornithine acetyltransferase36.850.7063
26 Mapoly0072s0022 [GO:0003746] translation elongation factor activity; [GO:0006414] translational elongation; [PTHR11741] ELONGATION FACTOR TS; [GO:0005622] intracellular; [PF00889] Elongation factor TS; [KOG1071] Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt37.880.6560
27 Mapoly0049s0044 [PTHR18838:SF16] UNCHARACTERIZED; [PF00581] Rhodanese-like domain; [KOG1530] Rhodanese-related sulfurtransferase; [PTHR18838] RHODANESE-LIKE DOMAIN-CONTAINING39.240.7180
28 Mapoly0085s0072 [KOG2703] C4-type Zn-finger protein; [PTHR10876] ZINC FINGER PROTEIN ZPR1; [PF03367] ZPR1 zinc-finger domain; [GO:0008270] zinc ion binding; [PTHR10876:SF0] ZINC FINGER PROTEIN ZPR1; [K06874] Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73]40.250.5487
29 Mapoly0001s0539 -40.300.6837
30 Mapoly0033s0099 [PF00929] Exonuclease; [KOG2248] 3'-5' exonuclease; [PTHR12801:SF45] EXONUCLEASE; [PTHR12801] EXONUCLEASE41.750.6916
31 Mapoly0088s0092 [GO:0000287] magnesium ion binding; [KOG4166] Thiamine pyrophosphate-requiring enzyme; [PF02775] Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; [PTHR18968] THIAMINE PYROPHOSPHATE ENZYMES; [2.2.1.6] Acetolactate synthase.; [GO:0030976] thiamine pyrophosphate binding; [PF00205] Thiamine pyrophosphate enzyme, central domain; [GO:0003824] catalytic activity; [K01652] acetolactate synthase I/II/III large subunit [EC:2.2.1.6]; [PF02776] Thiamine pyrophosphate enzyme, N-terminal TPP binding domain41.950.5894
32 Mapoly0066s0058 [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [KOG0330] ATP-dependent RNA helicase42.600.7041
33 Mapoly0110s0009 -42.950.5397
34 Mapoly0001s0479 [GO:0005759] mitochondrial matrix; [KOG2536] MAM33, mitochondrial matrix glycoprotein; [PTHR10826] COMPLEMENT COMPONENT 1; [PF02330] Mitochondrial glycoprotein43.470.6517
35 Mapoly0006s0193 [PTHR13370:SF3] gb def: expressed protein [arabidopsis thaliana]; [KOG2671] Putative RNA methylase; [PTHR13370] RNA METHYLASE-RELATED; [PF01170] Putative RNA methylase family UPF002045.110.7131
36 Mapoly0040s0029 [PTHR22840] FAMILY NOT NAMED; [GO:0005515] protein binding; [KOG2444] WD40 repeat protein; [PF00400] WD domain, G-beta repeat45.300.6131
37 Mapoly0108s0056 -45.960.6731
38 Mapoly0188s0014 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [KOG0750] Mitochondrial solute carrier protein47.960.6485
39 Mapoly0141s0032 [GO:0003723] RNA binding; [PF01985] CRS1 / YhbY (CRM) domain; [PTHR31846] FAMILY NOT NAMED49.840.6971
40 Mapoly0087s0082 [PF12298] Eukaryotic mitochondrial regulator protein51.120.6576
41 Mapoly0001s0165 -55.640.7110
42 Mapoly0027s0150 [PF04031] Las1-like; [PTHR15002] UNCHARACTERIZED59.600.5890
43 Mapoly0187s0002 [GO:0006396] RNA processing; [PF01137] RNA 3'-terminal phosphate cyclase; [PF05189] RNA 3'-terminal phosphate cyclase (RTC), insert domain; [KOG3980] RNA 3'-terminal phosphate cyclase; [PTHR11096:SF1] RNA 3-TERMINAL PHOSPHATE CYCLASE-RELATED; [PTHR11096] RNA 3' TERMINAL PHOSPHATE CYCLASE; [K11108] RNA 3'-terminal phosphate cyclase-like protein61.640.6917
44 Mapoly0061s0136 [PTHR11807] ATPASES OF THE PP SUPERFAMILY-RELATED; [PF01171] PP-loop family62.890.5886
45 Mapoly0062s0076 [PF00687] Ribosomal protein L1p/L10e family; [GO:0055114] oxidation-reduction process; [KOG2451] Aldehyde dehydrogenase; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [PTHR11699] ALDEHYDE DEHYDROGENASE-RELATED; [PF00171] Aldehyde dehydrogenase family66.410.6266
46 Mapoly2831s0001 [PTHR11599:SF10] PROTEASOME SUBUNIT ALPHA TYPE 3; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA70.920.4597
47 Mapoly0102s0026 [GO:0003677] DNA binding; [GO:0000786] nucleosome; [GO:0005634] nucleus; [KOG1744] Histone H2B; [PF00125] Core histone H2A/H2B/H3/H4; [K11252] histone H2B; [PTHR23428] HISTONE H2B72.830.6435
48 Mapoly0019s0020 [KOG3928] Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3; [PTHR12810] MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29; [PTHR12810:SF0] SUBFAMILY NOT NAMED; [PF10236] Mitochondrial ribosomal death-associated protein 373.820.6898
49 Mapoly0108s0064 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [GO:0005515] protein binding; [PF00856] SET domain; [KOG1337] N-methyltransferase; [PF09273] Rubisco LSMT substrate-binding74.740.6449
50 Mapoly0128s0017 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [KOG1919] RNA pseudouridylate synthases; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase75.350.7002
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