Guide Gene

Gene ID
Mapoly0125s0018
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[K05545] tRNA-dihydrouridine synthase 4 [EC:1.-.-.-]; [GO:0050660] flavin adenine dinucleotide binding; [GO:0055114] oxidation-reduction process; [PTHR11082:SF5] TRNA-DIHYDROURIDINE SYNTHASE 1; [PF01207] Dihydrouridine synthase (Dus); [KOG2335] tRNA-dihydrouridine synthase; [GO:0008033] tRNA processing; [PTHR11082] TRNA-DIHYDROURIDINE SYNTHASE; [GO:0017150] tRNA dihydrouridine synthase activity; [1.-.-.-] Oxidoreductases.

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0125s0018 [K05545] tRNA-dihydrouridine synthase 4 [EC:1.-.-.-]; [GO:0050660] flavin adenine dinucleotide binding; [GO:0055114] oxidation-reduction process; [PTHR11082:SF5] TRNA-DIHYDROURIDINE SYNTHASE 1; [PF01207] Dihydrouridine synthase (Dus); [KOG2335] tRNA-dihydrouridine synthase; [GO:0008033] tRNA processing; [PTHR11082] TRNA-DIHYDROURIDINE SYNTHASE; [GO:0017150] tRNA dihydrouridine synthase activity; [1.-.-.-] Oxidoreductases. 0.00 1.0000
1 Mapoly0021s0161 [KOG0331] ATP-dependent RNA helicase; [GO:0003723] RNA binding; [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PF08152] GUCT (NUC152) domain; [GO:0005634] nucleus; [PTHR24031:SF136] PREDICTED PROTEIN (FRAGMENT); [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding5.290.7071
2 Mapoly0001s0182 [PTHR32133] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF00646] F-box domain5.570.7978
3 Mapoly0130s0041 [PF13768] von Willebrand factor type A domain; [PF08487] Vault protein inter-alpha-trypsin domain; [PTHR10338] VON WILLEBRAND FACTOR, TYPE A DOMAIN CONTAINING7.420.7125
4 Mapoly0061s0125 [PTHR11158] MSF1/PX19 RELATED; [KOG3336] Predicted member of the intramitochondrial sorting protein family; [PTHR11158:SF17] SUBFAMILY NOT NAMED; [PF04707] PRELI-like family9.380.7215
5 Mapoly0005s0190 [PF06969] HemN C-terminal domain; [PF04055] Radical SAM superfamily; [1.3.99.22] Coproporphyrinogen dehydrogenase.; [PTHR13932] COPROPORPHYRINIGEN III OXIDASE; [GO:0003824] catalytic activity; [GO:0051536] iron-sulfur cluster binding; [K02495] oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]10.000.7331
6 Mapoly0005s0033 [PTHR12695] GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2; [GO:0006289] nucleotide-excision repair; [PTHR12695:SF2] GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2; [PF07975] TFIIH C1-like domain; [GO:0008270] zinc ion binding; [GO:0006281] DNA repair; [GO:0006351] transcription, DNA-dependent; [GO:0000439] core TFIIH complex; [KOG2807] RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1; [PF04056] Ssl1-like; [K03142] transcription initiation factor TFIIH subunit 210.390.7724
7 Mapoly0044s0034 [PF01259] SAICAR synthetase; [KOG2835] Phosphoribosylamidoimidazole-succinocarboxamide synthase; [K01923] phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]; [6.3.2.6] Phosphoribosylaminoimidazolesuccinocarboxamide synthase.; [PTHR11609] PURINE BIOSYNTHESIS PROTEIN 6/7, PUR6/7; [PTHR11609:SF1] PURINE BIOSYNTHESIS PROTEIN 7, PUR713.530.7658
8 Mapoly0014s0054 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family14.700.7168
9 Mapoly0029s0063 [PTHR20982:SF7] RIBOSOME RECYCLING FACTOR; [PTHR20982] RIBOSOME RECYCLING FACTOR; [KOG4759] Ribosome recycling factor; [PF01765] Ribosome recycling factor; [K02838] ribosome recycling factor; [GO:0006412] translation21.980.6909
10 Mapoly0028s0040 [PF01702] Queuine tRNA-ribosyltransferase; [2.4.2.29] tRNA-guanine(34) transglycosylase.; [GO:0008479] queuine tRNA-ribosyltransferase activity; [PTHR11962] QUEUINE TRNA-RIBOSYLTRANSFERASE; [GO:0008616] queuosine biosynthetic process; [K00773] queuine tRNA-ribosyltransferase [EC:2.4.2.29]; [KOG3908] Queuine-tRNA ribosyltransferase; [GO:0006400] tRNA modification22.960.6688
11 Mapoly0061s0021 [KOG3978] Predicted membrane protein; [PF10268] Predicted transmembrane protein 161AB24.450.6499
12 Mapoly0059s0084 [PF04389] Peptidase family M28; [PF02225] PA domain; [KOG2195] Transferrin receptor and related proteins containing the protease-associated (PA) domain; [PTHR10404] N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE; [PF04253] Transferrin receptor-like dimerisation domain25.690.6294
13 Mapoly0051s0036 [PF09790] Hyccin; [KOG4688] Putative beta-catenin-Tcf/Lef signaling pathway component DRCTNNB1A; [PTHR31220] FAMILY NOT NAMED26.080.6572
14 Mapoly0001s0418 -26.150.6606
15 Mapoly0006s0155 [GO:0003723] RNA binding; [PTHR11078] N UTILIZATION SUBSTANCE PROTEIN B-RELATED; [GO:0006355] regulation of transcription, DNA-dependent; [PF01029] NusB family; [GO:0006353] DNA-dependent transcription, termination27.220.7093
16 Mapoly0024s0063 -27.750.6904
17 Mapoly0049s0044 [PTHR18838:SF16] UNCHARACTERIZED; [PF00581] Rhodanese-like domain; [KOG1530] Rhodanese-related sulfurtransferase; [PTHR18838] RHODANESE-LIKE DOMAIN-CONTAINING28.460.7274
18 Mapoly0128s0017 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [KOG1919] RNA pseudouridylate synthases; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase28.770.7408
19 Mapoly0027s0051 -31.370.7106
20 Mapoly0003s0073 [PF00226] DnaJ domain; [PTHR24077] FAMILY NOT NAMED; [PF09320] Domain of unknown function (DUF1977)34.800.7216
21 Mapoly0001s0539 -35.570.6853
22 Mapoly0068s0002 [GO:0003676] nucleic acid binding; [PF01844] HNH endonuclease; [GO:0004519] endonuclease activity35.780.7166
23 Mapoly0001s0222 -36.820.5905
24 Mapoly0061s0039 [GO:0016020] membrane; [PF02517] CAAX protease self-immunity; [PTHR10794] ABHYDROLASE DOMAIN-CONTAINING PROTEIN38.180.6809
25 Mapoly0132s0009 -42.140.6830
26 Mapoly0037s0051 [PF12937] F-box-like; [GO:0005515] protein binding; [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN44.120.6362
27 Mapoly0001s0503 [PF04117] Mpv17 / PMP22 family; [GO:0016021] integral to membrane; [PTHR11266] PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 (MPV17); [KOG1944] Peroxisomal membrane protein MPV17 and related proteins52.640.5712
28 Mapoly0060s0074 -54.230.6984
29 Mapoly0001s0142 [PF08238] Sel1 repeat; [PTHR12298] PCDC2 (PROGRAMMED CELL DEATH PROTEIN 2)-RELATED; [PF01753] MYND finger55.500.6758
30 Mapoly0042s0041 [GO:0016020] membrane; [KOG0809] SNARE protein TLG2/Syntaxin 16; [GO:0005515] protein binding; [PTHR19957] SYNTAXIN; [PF00804] Syntaxin; [K08489] syntaxin 16; [PF05739] SNARE domain56.230.6056
31 Mapoly0006s0193 [PTHR13370:SF3] gb def: expressed protein [arabidopsis thaliana]; [KOG2671] Putative RNA methylase; [PTHR13370] RNA METHYLASE-RELATED; [PF01170] Putative RNA methylase family UPF002056.790.7035
32 Mapoly0051s0108 [PF11152] Protein of unknown function (DUF2930)59.740.6543
33 Mapoly0056s0118 [KOG1490] GTP-binding protein CRFG/NOG1 (ODN superfamily); [PTHR11702] DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED; [PF06858] Nucleolar GTP-binding protein 1 (NOG1); [PTHR11702:SF23] GTP-BINDING PROTEIN-RELATED; [PF08155] NOGCT (NUC087) domain; [K06943] nucleolar GTP-binding protein; [GO:0005525] GTP binding60.210.5845
34 Mapoly0187s0002 [GO:0006396] RNA processing; [PF01137] RNA 3'-terminal phosphate cyclase; [PF05189] RNA 3'-terminal phosphate cyclase (RTC), insert domain; [KOG3980] RNA 3'-terminal phosphate cyclase; [PTHR11096:SF1] RNA 3-TERMINAL PHOSPHATE CYCLASE-RELATED; [PTHR11096] RNA 3' TERMINAL PHOSPHATE CYCLASE; [K11108] RNA 3'-terminal phosphate cyclase-like protein60.240.6917
35 Mapoly0122s0043 [PF02810] SEC-C motif60.500.6910
36 Mapoly0032s0102 [GO:0008760] UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity; [GO:0016765] transferase activity, transferring alkyl or aryl (other than methyl) groups; [GO:0019277] UDP-N-acetylgalactosamine biosynthetic process; [PTHR21090] AROM/DEHYDROQUINATE SYNTHASE; [PF00275] EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); [PTHR21090:SF4] UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE61.610.6437
37 Mapoly0014s0151 [PTHR31096] FAMILY NOT NAMED61.850.5760
38 Mapoly0032s0026 [GO:0008270] zinc ion binding; [KOG3277] Uncharacterized conserved protein; [PF05180] DNL zinc finger65.050.6059
39 Mapoly2831s0001 [PTHR11599:SF10] PROTEASOME SUBUNIT ALPHA TYPE 3; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA70.260.4709
40 Mapoly0020s0029 [KOG1985] Vesicle coat complex COPII, subunit SEC24/subunit SFB2; [PF04815] Sec23/Sec24 helical domain; [GO:0008270] zinc ion binding; [PF08033] Sec23/Sec24 beta-sandwich domain; [PF04811] Sec23/Sec24 trunk domain; [GO:0006886] intracellular protein transport; [PF04810] Sec23/Sec24 zinc finger; [GO:0030127] COPII vesicle coat; [PTHR13803] SEC24-RELATED PROTEIN; [GO:0006888] ER to Golgi vesicle-mediated transport72.000.6126
41 Mapoly0130s0010 [GO:0016020] membrane; [GO:0030001] metal ion transport; [PF01544] CorA-like Mg2+ transporter protein; [GO:0055085] transmembrane transport; [GO:0046873] metal ion transmembrane transporter activity; [PTHR21535] MAGNESIUM AND COBALT TRANSPORT PROTEIN/MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM872.660.5824
42 Mapoly0012s0025 [PF01453] D-mannose binding lectin72.940.6593
43 Mapoly0138s0031 [PTHR32133] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF00646] F-box domain73.860.5682
44 Mapoly0066s0060 [GO:0005515] protein binding; [GO:0005730] nucleolus; [KOG0310] Conserved WD40 repeat-containing protein; [PF09384] UTP15 C terminal; [GO:0006364] rRNA processing; [K14549] U3 small nucleolar RNA-associated protein 15; [PTHR19924] FAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat74.620.7006
45 Mapoly0123s0005 [PTHR14614] HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN; [PF10294] Putative methyltransferase78.990.6823
46 Mapoly0036s0042 -79.900.5760
47 Mapoly0088s0019 [PTHR21392:SF2] gb def: Hypothetical protein At2g41750 (At2g41750/T11A7.15); [PTHR21392] UNCHARACTERIZED; [PF03942] DTW domain80.460.6585
48 Mapoly0050s0105 [PF02698] DUF218 domain; [KOG4533] Uncharacterized conserved protein80.500.5955
49 Mapoly0023s0020 [2.5.1.-] Transferring alkyl or aryl groups, other than methyl groups.; [PF01255] Putative undecaprenyl diphosphate synthase; [GO:0016765] transferase activity, transferring alkyl or aryl (other than methyl) groups; [PTHR10291] DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE; [K11778] cis-prenyltransferase, dehydrodolichyl diphosphate synthase [EC:2.5.1.-]; [PTHR10291:SF0] DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE83.350.6961
50 Mapoly0019s0065 [GO:0008652] cellular amino acid biosynthetic process; [GO:0055114] oxidation-reduction process; [GO:0009082] branched-chain amino acid biosynthetic process; [GO:0016491] oxidoreductase activity; [PF07991] Acetohydroxy acid isomeroreductase, catalytic domain; [1.1.1.86] Ketol-acid reductoisomerase.; [GO:0004455] ketol-acid reductoisomerase activity; [PTHR21371] FAMILY NOT NAMED; [K00053] ketol-acid reductoisomerase [EC:1.1.1.86]; [PTHR21371:SF1] SUBFAMILY NOT NAMED; [PF01450] Acetohydroxy acid isomeroreductase, catalytic domain85.900.6633
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