Guide Gene

Gene ID
Mapoly0024s0031
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR11525:SF0] SUBFAMILY NOT NAMED; [PTHR11525] FARNESYL-PYROPHOSPHATE SYNTHETASE; [2.5.1.1] Dimethylallyltranstransferase.; [GO:0008299] isoprenoid biosynthetic process; [PF00348] Polyprenyl synthetase; [KOG0711] Polyprenyl synthetase; [2.5.1.10] (2E,6E)-farnesyl diphosphate synthase.; [K00787] farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0024s0031 [PTHR11525:SF0] SUBFAMILY NOT NAMED; [PTHR11525] FARNESYL-PYROPHOSPHATE SYNTHETASE; [2.5.1.1] Dimethylallyltranstransferase.; [GO:0008299] isoprenoid biosynthetic process; [PF00348] Polyprenyl synthetase; [KOG0711] Polyprenyl synthetase; [2.5.1.10] (2E,6E)-farnesyl diphosphate synthase.; [K00787] farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] 0.00 1.0000
1 Mapoly0066s0080 [GO:0004452] isopentenyl-diphosphate delta-isomerase activity; [PTHR10885] ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE; [PTHR10885:SF0] ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE 1; [GO:0016787] hydrolase activity; [5.3.3.2] Isopentenyl-diphosphate Delta-isomerase.; [GO:0008299] isoprenoid biosynthetic process; [K01823] isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2]; [KOG0142] Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase; [PF00293] NUDIX domain2.450.7868
2 Mapoly0081s0021 [GO:0005524] ATP binding; [KOG1187] Serine/threonine protein kinase; [PF07645] Calcium-binding EGF domain; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [PF13947] Wall-associated receptor kinase galacturonan-binding; [GO:0030247] polysaccharide binding; [GO:0006468] protein phosphorylation; [GO:0005509] calcium ion binding; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE12.850.7062
3 Mapoly0077s0002 -14.490.7043
4 Mapoly0068s0030 [PTHR31656] FAMILY NOT NAMED; [PTHR31656:SF0] SUBFAMILY NOT NAMED; [PF06830] Root cap16.250.6212
5 Mapoly0036s0153 [PTHR10971:SF5] MITOTIC CHECKPOINT PROTEIN BUB3; [PTHR10971] MRNA EXPORT FACTOR AND BUB3; [GO:0005515] protein binding; [K02180] cell cycle arrest protein BUB3; [KOG1036] Mitotic spindle checkpoint protein BUB3, WD repeat superfamily; [PF00400] WD domain, G-beta repeat18.550.7571
6 Mapoly0060s0047 [GO:0003723] RNA binding; [PTHR10288] KH DOMAIN CONTAINING RNA BINDING PROTEIN; [PF00013] KH domain; [KOG2191] RNA-binding protein NOVA1/PASILLA and related KH domain proteins19.420.6950
7 Mapoly0031s0122 [PF10151] Uncharacterised conserved protein (DUF2359); [PTHR13448] UNCHARACTERIZED; [KOG4467] Uncharacterized conserved protein23.410.7101
8 Mapoly0005s0021 [PF13266] Protein of unknown function (DUF4057); [PTHR31132] FAMILY NOT NAMED24.120.7428
9 Mapoly0012s0174 [PF00225] Kinesin motor domain; [KOG0239] Kinesin (KAR3 subfamily); [PTHR24115:SF162] PROTEIN F20C5.2B, PARTIALLY CONFIRMED BY TRANSCRIPT EVIDENCE; [GO:0005524] ATP binding; [PF00373] FERM central domain; [PTHR24115] FAMILY NOT NAMED; [GO:0005871] kinesin complex; [PF00784] MyTH4 domain; [GO:0005856] cytoskeleton; [GO:0007018] microtubule-based movement; [PF09379] FERM N-terminal domain; [GO:0008017] microtubule binding; [GO:0003777] microtubule motor activity30.200.6957
10 Mapoly0001s0238 [PF02978] Signal peptide binding domain; [GO:0048500] signal recognition particle; [PF00448] SRP54-type protein, GTPase domain; [GO:0008312] 7S RNA binding; [K03106] signal recognition particle subunit SRP54; [KOG0780] Signal recognition particle, subunit Srp54; [GO:0006614] SRP-dependent cotranslational protein targeting to membrane; [PF02881] SRP54-type protein, helical bundle domain; [GO:0005525] GTP binding; [PTHR11564:SF5] SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN; [PTHR11564] GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS35.240.6714
11 Mapoly0126s0007 [KOG1187] Serine/threonine protein kinase; [PF07714] Protein tyrosine kinase; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PF00139] Legume lectin domain; [GO:0030246] carbohydrate binding; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE35.670.6700
12 Mapoly0027s0010 [K12580] CCR4-NOT transcription complex subunit 3; [PTHR23326:SF1] CCR4 NOT-RELATED; [GO:0006355] regulation of transcription, DNA-dependent; [PF04153] NOT2 / NOT3 / NOT5 family; [GO:0005634] nucleus; [PTHR23326] CCR4 NOT-RELATED; [PF04065] Not1 N-terminal domain, CCR4-Not complex component36.630.6734
13 Mapoly0109s0044 [GO:0003677] DNA binding; [GO:0006260] DNA replication; [PF04057] Replication factor-A protein 1, N-terminal domain; [GO:0005634] nucleus; [KOG0851] Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins; [PF08646] Replication factor-A C terminal domain; [GO:0003676] nucleic acid binding; [K07466] replication factor A1; [PTHR23273] REPLICATION FACTOR A 1, RFA1; [PF01336] OB-fold nucleic acid binding domain38.110.6963
14 Mapoly0060s0013 [6.3.4.14] Biotin carboxylase.; [GO:0005524] ATP binding; [GO:0016874] ligase activity; [PF02785] Biotin carboxylase C-terminal domain; [PF00289] Carbamoyl-phosphate synthase L chain, N-terminal domain; [6.4.1.2] Acetyl-CoA carboxylase.; [GO:0008152] metabolic process; [PTHR18866] CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE; [GO:0003824] catalytic activity; [K01961] acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]; [PF02786] Carbamoyl-phosphate synthase L chain, ATP binding domain39.870.6874
15 Mapoly0011s0101 -40.250.7053
16 Mapoly0011s0080 [KOG2315] Predicted translation initiation factor related to eIF-3a; [PTHR13227] NUCLEASE-RELATED; [PF08662] Eukaryotic translation initiation factor eIF2A40.300.6911
17 Mapoly0083s0062 [K09553] stress-induced-phosphoprotein 1; [GO:0005515] protein binding; [PF13414] TPR repeat; [KOG0548] Molecular co-chaperone STI1; [PF00515] Tetratricopeptide repeat; [PTHR22904] TPR REPEAT CONTAINING PROTEIN41.230.6687
18 Mapoly0061s0132 [PF00225] Kinesin motor domain; [GO:0005524] ATP binding; [PTHR24115] FAMILY NOT NAMED; [GO:0005871] kinesin complex; [GO:0007018] microtubule-based movement; [GO:0008017] microtubule binding; [GO:0003777] microtubule motor activity; [KOG0246] Kinesin-like protein; [K10393] kinesin family member 2/2441.500.6747
19 Mapoly0041s0078 [GO:0045454] cell redox homeostasis; [5.3.4.1] Protein disulfide-isomerase.; [KOG0191] Thioredoxin/protein disulfide isomerase; [PTHR18929:SF38] PREDICTED: SIMILAR TO PROTEIN DISULFIDE ISOMERASE-ASSOCIATED 6; [K09584] protein disulfide-isomerase A6 [EC:5.3.4.1]; [PF00085] Thioredoxin; [PTHR18929] PROTEIN DISULFIDE ISOMERASE42.640.7027
20 Mapoly0023s0050 [PF11559] Afadin- and alpha -actinin-Binding; [PTHR21736] VERNALIZATION-INSENSITIVE PROTEIN 343.930.6986
21 Mapoly0048s0104 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [GO:0005634] nucleus; [PF04689] DNA binding protein S1FA44.720.7039
22 Mapoly0095s0018 [KOG4840] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); [PF08538] Protein of unknown function (DUF1749); [PTHR31591] FAMILY NOT NAMED45.960.6432
23 Mapoly0007s0128 [GO:0005524] ATP binding; [4.1.1.33] Diphosphomevalonate decarboxylase.; [PTHR10977:SF2] DIPHOSPHOMEVALONATE DECARBOXYLASE; [GO:0008299] isoprenoid biosynthetic process; [K01597] diphosphomevalonate decarboxylase [EC:4.1.1.33]; [PF00288] GHMP kinases N terminal domain; [KOG2833] Mevalonate pyrophosphate decarboxylase; [PTHR10977] DIPHOSPHOMEVALONATE DECARBOXYLASE; [GO:0016831] carboxy-lyase activity47.670.6016
24 Mapoly0078s0045 [KOG3534] p53 inducible protein PIR121; [PF05994] Cytoplasmic Fragile-X interacting family; [K05749] cytoplasmic FMR1 interacting protein; [PTHR12195:SF0] SUBFAMILY NOT NAMED; [PTHR12195] P53 INDUCIBLE PROTEIN-RELATED49.800.6463
25 Mapoly0126s0039 [PF11209] Protein of unknown function (DUF2993)51.630.6535
26 Mapoly0009s0115 [PF03018] Dirigent-like protein; [PTHR21495] NUCLEOPORIN-RELATED53.400.6427
27 Mapoly0005s0178 [GO:0005524] ATP binding; [K03066] 26S proteasome regulatory subunit T6; [PTHR23073] 26S PROTEASE REGULATORY SUBUNIT; [KOG0728] 26S proteasome regulatory complex, ATPase RPT6; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23073:SF12] 26S PROTEASE REGULATORY SUBUNIT 853.960.6381
28 Mapoly0027s0071 [K08679] UDP-glucuronate 4-epimerase [EC:5.1.3.6]; [PF01370] NAD dependent epimerase/dehydratase family; [GO:0003824] catalytic activity; [KOG1371] UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase; [5.1.3.6] UDP-glucuronate 4-epimerase.; [GO:0050662] coenzyme binding; [PTHR10366] NAD DEPENDENT EPIMERASE/DEHYDRATASE55.480.6377
29 Mapoly0183s0009 [KOG4245] Predicted metal-dependent hydrolase of the TIM-barrel fold; [PTHR21240:SF5] SUBFAMILY NOT NAMED; [PF04909] Amidohydrolase; [GO:0008152] metabolic process; [PTHR21240] 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE; [GO:0003824] catalytic activity57.690.6398
30 Mapoly0019s0062 -62.030.6137
31 Mapoly0115s0071 [GO:0005515] protein binding; [PF13414] TPR repeat; [PF00226] DnaJ domain; [PF00515] Tetratricopeptide repeat; [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER; [KOG0550] Molecular chaperone (DnaJ superfamily)62.120.5749
32 Mapoly0056s0086 -65.950.6214
33 Mapoly2351s0001 [GO:0005506] iron ion binding; [GO:0055114] oxidation-reduction process; [GO:0016705] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; [GO:0020037] heme binding; [PTHR24298] FAMILY NOT NAMED; [PF00067] Cytochrome P45067.460.6457
34 Mapoly0010s0153 [KOG1390] Acetyl-CoA acetyltransferase; [PTHR18919] ACETYL-COA C-ACYLTRANSFERASE; [K00626] acetyl-CoA C-acetyltransferase [EC:2.3.1.9]; [GO:0016747] transferase activity, transferring acyl groups other than amino-acyl groups; [PF00108] Thiolase, N-terminal domain; [GO:0008152] metabolic process; [2.3.1.9] Acetyl-CoA C-acetyltransferase.; [PF02803] Thiolase, C-terminal domain67.530.6783
35 Mapoly0048s0065 [KOG1672] ATP binding protein; [GO:0045454] cell redox homeostasis; [PTHR21148] PHOSDUCIN-RELATED; [PF00085] Thioredoxin68.350.6300
36 Mapoly0001s0011 [K02219] cyclin-dependent kinase regulatory subunit CKS1; [KOG3484] Cyclin-dependent protein kinase CDC28, regulatory subunit CKS1, and related proteins; [PF01111] Cyclin-dependent kinase regulatory subunit; [GO:0016538] cyclin-dependent protein serine/threonine kinase regulator activity; [GO:0007049] cell cycle; [PTHR23415] CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP772.110.6672
37 Mapoly0078s0003 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [PTHR12029] RNA METHYLTRANSFERASE; [PF00588] SpoU rRNA Methylase family; [GO:0008173] RNA methyltransferase activity72.750.6821
38 Mapoly0006s0226 [K09422] myb proto-oncogene protein, plant; [PF00249] Myb-like DNA-binding domain; [PTHR10641] MYB-LIKE DNA-BINDING PROTEIN MYB; [GO:0003682] chromatin binding; [PTHR10641:SF203] SUBFAMILY NOT NAMED74.580.6388
39 Mapoly0066s0078 [GO:0034453] microtubule anchoring; [PTHR15431:SF3] FGFR1 ONCOGENE PARTNER; [PTHR15431] FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN; [GO:0005815] microtubule organizing center; [PF09398] FOP N terminal dimerisation domain76.220.6491
40 Mapoly0001s0009 [PTHR10540:SF7] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7; [GO:0005515] protein binding; [PF13012] Maintenance of mitochondrial structure and function; [PTHR10540] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED; [PF01398] JAB1/Mov34/MPN/PAD-1 ubiquitin protease; [KOG1556] 26S proteasome regulatory complex, subunit RPN8/PSMD7; [K03038] 26S proteasome regulatory subunit N876.730.6868
41 Mapoly0085s0083 -77.030.6039
42 Mapoly0013s0048 [KOG0381] HMG box-containing protein; [PF00505] HMG (high mobility group) box; [PTHR13711] SWI/SNF-RELATED CHROMATIN BINDING PROTEIN79.310.6854
43 Mapoly0081s0019 [PF00083] Sugar (and other) transporter; [GO:0016021] integral to membrane; [GO:0055085] transmembrane transport; [KOG0255] Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily); [PTHR24064] FAMILY NOT NAMED; [GO:0022857] transmembrane transporter activity81.880.5994
44 Mapoly0127s0051 [GO:0045454] cell redox homeostasis; [5.3.4.1] Protein disulfide-isomerase.; [PF13848] Thioredoxin-like domain; [KOG0190] Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit); [PF00085] Thioredoxin; [K09580] protein disulfide-isomerase A1 [EC:5.3.4.1]; [PTHR18929] PROTEIN DISULFIDE ISOMERASE81.980.5315
45 Mapoly0015s0079 [GO:0016020] membrane; [PTHR21257] STEROL REDUCTASE/LAMIN B RECEPTOR; [PTHR21257:SF22] SUBFAMILY NOT NAMED; [1.3.1.21] 7-dehydrocholesterol reductase.; [KOG1435] Sterol reductase/lamin B receptor; [K00213] 7-dehydrocholesterol reductase [EC:1.3.1.21]; [PF01222] Ergosterol biosynthesis ERG4/ERG24 family82.020.6607
46 Mapoly0040s0140 [K14500] BR-signaling kinase [EC:2.7.11.1]; [KOG1187] Serine/threonine protein kinase; [PF07714] Protein tyrosine kinase; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [GO:0006468] protein phosphorylation; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE83.120.6421
47 Mapoly0005s0205 [PF00226] DnaJ domain; [KOG0719] Molecular chaperone (DnaJ superfamily); [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER83.500.6812
48 Mapoly0033s0168 [GO:0008168] methyltransferase activity; [PF03141] Putative S-adenosyl-L-methionine-dependent methyltransferase86.160.5741
49 Mapoly0030s0151 [PF14368] Probable lipid transfer86.750.6397
50 Mapoly0003s0088 [GO:0003677] DNA binding; [KOG1745] Histones H3 and H4; [GO:0000786] nucleosome; [K11253] histone H3; [PTHR11426] HISTONE H3; [PF00125] Core histone H2A/H2B/H3/H489.080.6532
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