Guide Gene

Gene ID
Mapoly0001s0084
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF13424] Tetratricopeptide repeat; [PF13374] Tetratricopeptide repeat; [KOG1840] Kinesin light chain; [PTHR19959] KINESIN LIGHT CHAIN

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0001s0084 [PF13424] Tetratricopeptide repeat; [PF13374] Tetratricopeptide repeat; [KOG1840] Kinesin light chain; [PTHR19959] KINESIN LIGHT CHAIN 0.00 1.0000
1 Mapoly0054s0113 [GO:0006396] RNA processing; [2.1.1.-] Methyltransferases.; [PTHR11061] RNA M5U METHYLTRANSFERASE FAMILY; [K00599] trans-aconitate 2-methyltransferase [EC:2.1.1.144]; [GO:0008173] RNA methyltransferase activity; [PF05958] tRNA (Uracil-5-)-methyltransferase; [KOG2187] tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes2.830.8939
2 Mapoly0008s0120 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding3.160.8734
3 Mapoly0120s0021 -5.290.8871
4 Mapoly0145s0006 [PF00264] Common central domain of tyrosinase; [PF12142] Polyphenol oxidase middle domain; [GO:0055114] oxidation-reduction process; [PTHR11474] TYROSINASE; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [GO:0004097] catechol oxidase activity; [PF12143] Protein of unknown function (DUF_B2219)5.480.8371
5 Mapoly0074s0049 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [PF01926] 50S ribosome-binding GTPase; [KOG1249] Predicted GTPases; [GO:0005525] GTP binding5.660.8765
6 Mapoly0056s0018 [GO:0004222] metalloendopeptidase activity; [GO:0005524] ATP binding; [KOG0731] AAA+-type ATPase containing the peptidase M41 domain; [PF01434] Peptidase family M41; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis6.480.8704
7 Mapoly0037s0113 [GO:0003723] RNA binding; [PF07521] RNA-metabolising metallo-beta-lactamase; [PTHR11203] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; [PTHR11203:SF22] BETA-LACTAMASE DOMAIN PROTEIN; [PF00753] Metallo-beta-lactamase superfamily; [GO:0016788] hydrolase activity, acting on ester bonds; [PF13837] Myb/SANT-like DNA-binding domain; [GO:0046872] metal ion binding6.930.8768
8 Mapoly0056s0004 -8.370.8316
9 Mapoly0079s0067 [PF13450] NAD(P)-binding Rossmann-like domain; [PTHR16128] FAMILY NOT NAMED9.900.8602
10 Mapoly0008s0219 -10.390.8355
11 Mapoly0091s0043 [PF00264] Common central domain of tyrosinase; [PF12142] Polyphenol oxidase middle domain; [GO:0055114] oxidation-reduction process; [PTHR11474] TYROSINASE; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [GO:0004097] catechol oxidase activity; [PF12143] Protein of unknown function (DUF_B2219)10.910.8220
12 Mapoly0080s0087 [PF09285] Elongation factor P, C-terminal; [GO:0003746] translation elongation factor activity; [GO:0006414] translational elongation; [GO:0005737] cytoplasm; [GO:0043043] peptide biosynthetic process; [K02356] elongation factor EF-P; [PF08207] Elongation factor P (EF-P) KOW-like domain; [PF01132] Elongation factor P (EF-P) OB domain; [PTHR30053] ELONGATION FACTOR P14.970.8461
13 Mapoly0091s0082 [PF08245] Mur ligase middle domain; [GO:0005524] ATP binding; [PTHR23135:SF4] UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE; [GO:0016874] ligase activity; [GO:0009058] biosynthetic process; [PF01225] Mur ligase family, catalytic domain; [PF02875] Mur ligase family, glutamate ligase domain; [KOG2525] Folylpolyglutamate synthase; [PTHR23135] MUR LIGASE FAMILY MEMBER15.000.8426
14 Mapoly0048s0090 [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family15.970.8303
15 Mapoly0063s0074 [PTHR18952] CARBONIC ANHYDRASE; [PF00194] Eukaryotic-type carbonic anhydrase; [KOG0382] Carbonic anhydrase18.470.7814
16 Mapoly0009s0196 [GO:0000287] magnesium ion binding; [PF01926] 50S ribosome-binding GTPase; [PTHR11702] DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED; [PTHR11702:SF3] MITOCHONDRIAL GTPASE 2(YEAST)/OBG-RELATED; [PF01018] GTP1/OBG; [GO:0003924] GTPase activity; [KOG1489] Predicted GTP-binding protein (ODN superfamily); [GO:0005525] GTP binding18.650.7840
17 Mapoly0061s0053 -19.000.8160
18 Mapoly0005s0156 [GO:0005737] cytoplasm; [PF04055] Radical SAM superfamily; [PTHR30544] 23S RRNA METHYLTRANSFERASE; [GO:0008173] RNA methyltransferase activity; [GO:0003824] catalytic activity; [GO:0006364] rRNA processing; [GO:0051536] iron-sulfur cluster binding19.050.7780
19 Mapoly0092s0063 [PF03235] Protein of unknown function DUF26219.130.6952
20 Mapoly0040s0139 [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [PF10458] Valyl tRNA synthetase tRNA binding arm; [PF08264] Anticodon-binding domain of tRNA; [KOG0432] Valyl-tRNA synthetase; [6.1.1.9] Valine--tRNA ligase.; [GO:0004832] valine-tRNA ligase activity; [GO:0006438] valyl-tRNA aminoacylation; [K01873] valyl-tRNA synthetase [EC:6.1.1.9]; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [PF00133] tRNA synthetases class I (I, L, M and V); [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity20.170.8362
21 Mapoly0125s0038 -20.350.8180
22 Mapoly0021s0085 [GO:0055114] oxidation-reduction process; [PF01266] FAD dependent oxidoreductase; [PF01494] FAD binding domain; [GO:0016491] oxidoreductase activity; [PTHR10617] ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE21.350.8012
23 Mapoly0022s0147 [KOG1191] Mitochondrial GTPase; [PF01926] 50S ribosome-binding GTPase; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [PF14714] KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; [GO:0005525] GTP binding21.630.7962
24 Mapoly0048s0045 [GO:0006355] regulation of transcription, DNA-dependent; [PF00847] AP2 domain; [GO:0003700] sequence-specific DNA binding transcription factor activity; [PTHR32467] FAMILY NOT NAMED22.090.7460
25 Mapoly0014s0025 [KOG2854] Possible pfkB family carbohydrate kinase; [PF00294] pfkB family carbohydrate kinase; [PTHR10584] SUGAR KINASE23.070.7851
26 Mapoly0141s0001 [PTHR12770] FAMILY NOT NAMED; [PF04884] Vitamin B6 photo-protection and homoeostasis; [KOG4249] Uncharacterized conserved protein; [PTHR12770:SF7] SUBFAMILY NOT NAMED25.300.7791
27 Mapoly0003s0152 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family26.380.7480
28 Mapoly0051s0001 [GO:0006433] prolyl-tRNA aminoacylation; [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [GO:0000166] nucleotide binding; [PTHR11451:SF6] PROLYL-TRNA SYNTHETASE; [GO:0004827] proline-tRNA ligase activity; [KOG4163] Prolyl-tRNA synthetase; [PTHR11451] TRNA SYNTHETASE-RELATED; [PF03129] Anticodon binding domain; [6.1.1.15] Proline--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF09180] Prolyl-tRNA synthetase, C-terminal; [K01881] prolyl-tRNA synthetase [EC:6.1.1.15]26.530.8263
29 Mapoly0026s0053 [PF00190] Cupin; [GO:0045735] nutrient reservoir activity; [PTHR31238] FAMILY NOT NAMED26.980.7168
30 Mapoly0136s0003 [PF01926] 50S ribosome-binding GTPase; [PTHR11702] DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED; [GO:0000166] nucleotide binding; [PTHR11702:SF20] GTP-BINDING PROTEIN; [PF09269] Domain of unknown function (DUF1967); [PF01018] GTP1/OBG; [KOG1489] Predicted GTP-binding protein (ODN superfamily); [GO:0005525] GTP binding28.840.8336
31 Mapoly0114s0038 [PF13812] Pentatricopeptide repeat domain; [PTHR13547] UNCHARACTERIZED; [PTHR13547:SF2] gb def: hypothetical protein [arabidopsis thaliana]; [PF11977] Zc3h12a-like Ribonuclease NYN domain29.170.8051
32 Mapoly0006s0098 [GO:0003723] RNA binding; [KOG1990] Poly(A)-specific exoribonuclease PARN; [PF01985] CRS1 / YhbY (CRM) domain; [PTHR31846] FAMILY NOT NAMED29.390.7751
33 Mapoly0047s0104 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family30.660.8140
34 Mapoly0080s0050 [GO:0003723] RNA binding; [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [GO:0006355] regulation of transcription, DNA-dependent; [PF01029] NusB family; [2.1.1.-] Methyltransferases.; [KOG1122] tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2); [PF01189] NOL1/NOP2/sun family; [K03500] ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]30.980.7399
35 Mapoly0031s0123 [PF13812] Pentatricopeptide repeat domain; [PTHR31407] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF02037] SAP domain31.420.8139
36 Mapoly0074s0047 [GO:0006355] regulation of transcription, DNA-dependent; [PTHR10071] TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR); [GO:0008270] zinc ion binding; [GO:0043565] sequence-specific DNA binding; [GO:0003700] sequence-specific DNA binding transcription factor activity; [PF00320] GATA zinc finger33.260.7264
37 Mapoly0056s0075 -37.520.8069
38 Mapoly0054s0048 [KOG3217] Protein tyrosine phosphatase; [PTHR11717] LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE; [PTHR11717:SF12] LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE 1; [PF01451] Low molecular weight phosphotyrosine protein phosphatase37.950.7683
39 Mapoly0101s0005 [K01883] cysteinyl-tRNA synthetase [EC:6.1.1.16]; [PTHR10890] CYSTEINYL-TRNA SYNTHETASE; [PF01406] tRNA synthetases class I (C) catalytic domain; [6.1.1.16] Cysteine--tRNA ligase.; [KOG2007] Cysteinyl-tRNA synthetase38.830.7551
40 Mapoly0006s0155 [GO:0003723] RNA binding; [PTHR11078] N UTILIZATION SUBSTANCE PROTEIN B-RELATED; [GO:0006355] regulation of transcription, DNA-dependent; [PF01029] NusB family; [GO:0006353] DNA-dependent transcription, termination39.600.7484
41 Mapoly0052s0067 [GO:0004222] metalloendopeptidase activity; [GO:0005524] ATP binding; [PF01434] Peptidase family M41; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis40.250.7830
42 Mapoly0002s0312 [PTHR11712] POLYKETIDE SYNTHASE-RELATED; [PF00109] Beta-ketoacyl synthase, N-terminal domain; [PF02801] Beta-ketoacyl synthase, C-terminal domain; [KOG1394] 3-oxoacyl-(acyl-carrier-protein) synthase (I and II)40.470.7655
43 Mapoly0109s0052 [4.1.2.25] Dihydroneopterin aldolase.; [PTHR20941] FOLATE SYNTHESIS PROTEINS; [PF02152] Dihydroneopterin aldolase; [K01633] dihydroneopterin aldolase [EC:4.1.2.25]; [GO:0004150] dihydroneopterin aldolase activity; [GO:0006760] folic acid-containing compound metabolic process40.500.6729
44 Mapoly0003s0096 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [GO:0005515] protein binding; [PF00856] SET domain; [PF09273] Rubisco LSMT substrate-binding41.830.7767
45 Mapoly0060s0041 [PF05303] Protein of unknown function (DUF727); [PF12807] Translation initiation factor eIF3 subunit 135; [PF13236] Clustered mitochondria; [PF13424] Tetratricopeptide repeat; [PTHR12601] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT (EIF-3); [PF15044] Mitochondrial function, CLU-N-term42.430.7614
46 Mapoly0001s0095 -44.620.6650
47 Mapoly0113s0060 [GO:0003723] RNA binding; [K07574] RNA-binding protein; [PF01985] CRS1 / YhbY (CRM) domain; [PTHR31846] FAMILY NOT NAMED45.730.7562
48 Mapoly0094s0038 [KOG1401] Acetylornithine aminotransferase; [K01845] glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]; [PTHR11986] AMINOTRANSFERASE CLASS III; [GO:0030170] pyridoxal phosphate binding; [GO:0008483] transaminase activity; [5.4.3.8] Glutamate-1-semialdehyde 2,1-aminomutase.; [PF00202] Aminotransferase class-III49.820.7773
49 Mapoly0214s0004 [PF04539] Sigma-70 region 3; [GO:0003677] DNA binding; [PTHR30603] RNA POLYMERASE SIGMA FACTOR RPO; [GO:0006355] regulation of transcription, DNA-dependent; [GO:0006352] DNA-dependent transcription, initiation; [PF00140] Sigma-70 factor, region 1.2; [GO:0003700] sequence-specific DNA binding transcription factor activity; [PF04542] Sigma-70 region 2; [PF04545] Sigma-70, region 4; [GO:0016987] sigma factor activity50.010.7679
50 Mapoly0142s0042 [PF01255] Putative undecaprenyl diphosphate synthase; [KOG1602] Cis-prenyltransferase; [GO:0016765] transferase activity, transferring alkyl or aryl (other than methyl) groups; [PTHR10291] DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE50.200.6928
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