Guide Gene

Gene ID
Mapoly0179s0014
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR11586:SF1] SUBFAMILY NOT NAMED; [KOG2241] tRNA-binding protein; [PF01588] Putative tRNA binding domain; [GO:0000049] tRNA binding; [PTHR11586] FAMILY NOT NAMED

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0179s0014 [PTHR11586:SF1] SUBFAMILY NOT NAMED; [KOG2241] tRNA-binding protein; [PF01588] Putative tRNA binding domain; [GO:0000049] tRNA binding; [PTHR11586] FAMILY NOT NAMED 0.00 1.0000
1 Mapoly0051s0054 -2.000.8430
2 Mapoly0139s0003 [PF11523] Protein of unknown function (DUF3223)3.000.8330
3 Mapoly0008s0078 [PF03966] Trm112p-like protein; [PTHR12773] UPF0315 PROTEIN-RELATED4.240.8268
4 Mapoly0162s0019 [GO:0005840] ribosome; [KOG1624] Mitochondrial/chloroplast ribosomal protein L4; [GO:0003735] structural constituent of ribosome; [K02926] large subunit ribosomal protein L4; [PF00573] Ribosomal protein L4/L1 family; [PTHR10746] 50S RIBOSOMAL PROTEIN L4; [GO:0006412] translation5.660.8283
5 Mapoly0001s0053 -5.830.8042
6 Mapoly0007s0156 [PTHR31745] FAMILY NOT NAMED; [PF08536] Whirly transcription factor5.920.8267
7 Mapoly0006s0190 [GO:0005840] ribosome; [GO:0003735] structural constituent of ribosome; [KOG3436] 60S ribosomal protein L35; [PTHR13872] 60S RIBOSOMAL PROTEIN L35; [GO:0005622] intracellular; [PF00831] Ribosomal L29 protein; [GO:0006412] translation; [K02918] large subunit ribosomal protein L35e6.160.8405
8 Mapoly0015s0123 [GO:0003723] RNA binding; [PF07541] Eukaryotic translation initiation factor 2 alpha subunit; [GO:0005850] eukaryotic translation initiation factor 2 complex; [PTHR10602] EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1; [K03237] translation initiation factor eIF-2 alpha subunit; [GO:0003743] translation initiation factor activity; [PTHR10602:SF0] EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1; [PF00575] S1 RNA binding domain; [KOG2916] Translation initiation factor 2, alpha subunit (eIF-2alpha)7.420.8131
9 Mapoly0083s0082 [PTHR15840] CGI-121 FAMILY MEMBER; [KOG4066] Cell growth regulatory protein CGR11; [PF08617] Kinase binding protein CGI-1217.750.8270
10 Mapoly0014s0105 -9.800.8189
11 Mapoly0026s0057 [PTHR23417] 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE; [PF02390] Putative methyltransferase; [GO:0008176] tRNA (guanine-N7-)-methyltransferase activity; [K03439] tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]; [2.1.1.33] tRNA (guanine(46)-N(7))-methyltransferase.; [KOG3115] Methyltransferase-like protein; [GO:0006400] tRNA modification10.250.7964
12 Mapoly0097s0065 [PTHR15350:SF2] COP9 SIGNALOSOME COMPLEX SUBUNIT 7; [GO:0005515] protein binding; [PF01399] PCI domain; [PTHR15350] COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17; [KOG2753] Uncharacterized conserved protein, contains PCI domain13.420.8164
13 Mapoly0027s0144 [GO:0016272] prefoldin complex; [KOG3501] Molecular chaperone Prefoldin, subunit 1; [PTHR20903] PREFOLDIN SUBUNIT 1-RELATED; [GO:0006457] protein folding; [GO:0051082] unfolded protein binding; [PF01920] Prefoldin subunit15.000.8085
14 Mapoly0048s0048 [PTHR31802] FAMILY NOT NAMED15.300.8179
15 Mapoly0005s0006 [GO:0003723] RNA binding; [GO:0005737] cytoplasm; [GO:0003743] translation initiation factor activity; [KOG1670] Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins; [K03259] translation initiation factor eIF-4E; [PF01652] Eukaryotic initiation factor 4E; [GO:0006413] translational initiation; [PTHR11960] EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED16.310.8018
16 Mapoly0083s0001 [GO:0008168] methyltransferase activity; [PF05891] AdoMet dependent proline di-methyltransferase; [PTHR12753] AD-003 - RELATED16.730.7820
17 Mapoly0014s0176 -17.440.7622
18 Mapoly0012s0108 [K03123] transcription initiation factor TFIIA small subunit; [PF02751] Transcription initiation factor IIA, gamma subunit; [PTHR10966] TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2; [KOG3463] Transcription initiation factor IIA, gamma subunit; [GO:0005672] transcription factor TFIIA complex; [GO:0006367] transcription initiation from RNA polymerase II promoter; [PF02268] Transcription initiation factor IIA, gamma subunit, helical domain17.660.7895
19 Mapoly0134s0022 [PF01926] 50S ribosome-binding GTPase; [KOG1491] Predicted GTP-binding protein (ODN superfamily); [PF06071] Protein of unknown function (DUF933); [K06942] ribosomal RNA large subunit methyltransferase N [EC:2.1.1.-]; [PTHR23305] GTP-BINDING PROTEIN-RELATED; [GO:0005525] GTP binding18.710.7889
20 Mapoly0091s0083 [GO:0003723] RNA binding; [PTHR13452:SF6] TRNA ACETYLTRANSFERASE TAN1; [PTHR13452] THUMP DOMAIN CONTAINING PROTEIN 1-RELATED; [PF02926] THUMP domain; [K06963] ribosomal RNA assembly protein19.240.7643
21 Mapoly0047s0069 [GO:0005524] ATP binding; [GO:0044267] cellular protein metabolic process; [PTHR11353] CHAPERONIN; [PF00118] TCP-1/cpn60 chaperonin family; [KOG0358] Chaperonin complex component, TCP-1 delta subunit (CCT4)19.800.8099
22 Mapoly0092s0049 [PTHR10501] U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B; [K11094] U2 small nuclear ribonucleoprotein B''; [GO:0000398] mRNA splicing, via spliceosome; [KOG4206] Spliceosomal protein snRNP-U1A/U2B; [GO:0003676] nucleic acid binding; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [GO:0017069] snRNA binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)20.400.8077
23 Mapoly0133s0052 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [K08851] TP53 regulating kinase [EC:2.7.11.1]; [PTHR12209] O-SIALOGLYCOPROTEIN ENDOPEPTIDASE; [GO:0006468] protein phosphorylation; [KOG3087] Serine/threonine protein kinase; [GO:0004674] protein serine/threonine kinase activity21.020.8112
24 Mapoly0001s0201 [GO:0005840] ribosome; [KOG3449] 60S acidic ribosomal protein P2; [GO:0006414] translational elongation; [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [GO:0003735] structural constituent of ribosome; [K02943] large subunit ribosomal protein LP2; [GO:0005622] intracellular; [PF00428] 60s Acidic ribosomal protein21.910.7996
25 Mapoly0077s0014 [PTHR21148:SF12] PHOSDUCIN; [KOG1672] ATP binding protein; [GO:0045454] cell redox homeostasis; [PTHR21148] PHOSDUCIN-RELATED; [PF00085] Thioredoxin22.630.7229
26 Mapoly0005s0125 [PF05383] La domain; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [PF08777] RNA binding motif; [K11090] lupus La protein; [KOG4213] RNA-binding protein La; [PTHR22792] LUPUS LA PROTEIN-RELATED23.000.7911
27 Mapoly0123s0035 [PTHR14614] HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN; [PF10294] Putative methyltransferase; [KOG3201] Uncharacterized conserved protein24.600.6877
28 Mapoly0071s0007 [GO:0005524] ATP binding; [GO:0044267] cellular protein metabolic process; [PTHR11353] CHAPERONIN; [PF00118] TCP-1/cpn60 chaperonin family; [K09494] T-complex protein 1 subunit beta; [KOG0363] Chaperonin complex component, TCP-1 beta subunit (CCT2)24.740.8023
29 Mapoly0009s0030 [PF06984] Mitochondrial 39-S ribosomal protein L47 (MRP-L47); [GO:0005761] mitochondrial ribosome; [GO:0003735] structural constituent of ribosome; [PTHR21183] RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED; [GO:0006412] translation26.120.7923
30 Mapoly0109s0034 [K03246] translation initiation factor eIF-3 subunit 2; [GO:0005515] protein binding; [PTHR19877] WD40 REPEAT PROTEIN; [KOG0643] Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1); [PF00400] WD domain, G-beta repeat26.320.7701
31 Mapoly0005s0217 [KOG3428] Small nuclear ribonucleoprotein SMD1 and related snRNPs; [K11087] small nuclear ribonucleoprotein D1; [PTHR23338] SMALL NUCLEAR RIBONUCLEOPROTEIN SM; [PF01423] LSM domain26.380.8116
32 Mapoly0020s0168 [PTHR10898] MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9; [KOG3479] Mitochondrial import inner membrane translocase, subunit TIM9; [PF02953] Tim10/DDP family zinc finger26.500.7874
33 Mapoly0071s0017 [GO:0005838] proteasome regulatory particle; [PTHR12387] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8; [K03031] 26S proteasome regulatory subunit N12; [GO:0006508] proteolysis; [KOG3151] 26S proteasome regulatory complex, subunit RPN12/PSMD8; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family27.170.7541
34 Mapoly0043s0090 [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [6.1.1.22] Asparagine--tRNA ligase.; [KOG0554] Asparaginyl-tRNA synthetase (mitochondrial); [K01893] asparaginyl-tRNA synthetase [EC:6.1.1.22]; [GO:0003676] nucleic acid binding; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N)27.960.7688
35 Mapoly0056s0020 [PF04548] AIG1 family; [PTHR10903] GTPASE, IMAP FAMILY MEMBER-RELATED; [GO:0005525] GTP binding29.390.7726
36 Mapoly0003s0247 [K12845] U4/U6 small nuclear ribonucleoprotein SNU13; [KOG3387] 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing; [PTHR23105] RIBOSOMAL PROTEIN L7AE FAMILY MEMBER; [PF01248] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family29.980.7782
37 Mapoly0152s0024 [PTHR21026:SF2] gb def: Putative 39S ribosomal protein L32, mitochondrial precursor; [GO:0003735] structural constituent of ribosome; [GO:0015934] large ribosomal subunit; [PTHR21026] 39S RIBOSOMAL PROTEIN L32, MITOCHONDRIAL; [GO:0006412] translation; [PF01783] Ribosomal L32p protein family30.850.7365
38 Mapoly0114s0041 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [KOG0879] U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [K09567] peptidyl-prolyl isomerase H (cyclophilin H) [EC:5.2.1.8]; [PTHR11071:SF58] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H, PPIH32.250.7398
39 Mapoly0066s0106 [PTHR15588] LSM1; [KOG1784] Small Nuclear ribonucleoprotein splicing factor; [K12627] U6 snRNA-associated Sm-like protein LSm8; [PF01423] LSM domain33.410.7666
40 Mapoly0151s0030 [PF00557] Metallopeptidase family M24; [PTHR10804:SF11] PROLIFERATION-ASSOCIATED PROTEIN 2G4; [PTHR10804] PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P); [KOG2776] Metallopeptidase36.330.7751
41 Mapoly0006s0112 [K09613] COP9 signalosome complex subunit 5 [EC:3.4.-.-]; [GO:0005515] protein binding; [PTHR10410:SF6] COP9 SIGNALOSOME COMPLEX SUBUNIT 5; [PF01398] JAB1/Mov34/MPN/PAD-1 ubiquitin protease; [3.4.-.-] Acting on peptide bonds (peptide hydrolases).; [PTHR10410] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED; [KOG1554] COP9 signalosome, subunit CSN538.170.7730
42 Mapoly0029s0022 [PTHR23002] ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN; [PF06273] Plant specific eukaryotic initiation factor 4B; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [GO:0003676] nucleic acid binding38.730.7401
43 Mapoly0028s0114 [K14565] nucleolar protein 58; [PF01798] Putative snoRNA binding domain; [PF08060] NOSIC (NUC001) domain; [PTHR10894:SF1] NUCLEOLAR PROTEIN NOP56-RELATED; [PF08156] NOP5NT (NUC127) domain; [KOG2572] Ribosome biogenesis protein - Nop58p/Nop5p; [PTHR10894] NUCLEOLAR PROTEIN 5 (NUCLEOLAR PROTEIN NOP5)(NOP58)38.790.7671
44 Mapoly0031s0028 -38.880.7239
45 Mapoly0012s0036 [PF01926] 50S ribosome-binding GTPase; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [GO:0005525] GTP binding39.060.6962
46 Mapoly0036s0058 [GO:0008652] cellular amino acid biosynthetic process; [KOG4354] N-acetyl-gamma-glutamyl-phosphate reductase; [PF01118] Semialdehyde dehydrogenase, NAD binding domain; [GO:0005737] cytoplasm; [GO:0055114] oxidation-reduction process; [GO:0046983] protein dimerization activity; [PF02774] Semialdehyde dehydrogenase, dimerisation domain; [1.2.1.-] With NAD(+) or NADP(+) as acceptor.; [GO:0016620] oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; [PTHR32338] FAMILY NOT NAMED; [K00145] N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-aminoadipyl-phosphate reductase [EC:1.2.1.38 1.2.1.-]; [GO:0051287] NAD binding; [GO:0003942] N-acetyl-gamma-glutamyl-phosphate reductase activity; [1.2.1.38] N-acetyl-gamma-glutamyl-phosphate reductase.43.310.7206
47 Mapoly0037s0133 -43.500.7093
48 Mapoly0014s0106 [KOG3172] Small nuclear ribonucleoprotein Sm D3; [PTHR23338] SMALL NUCLEAR RIBONUCLEOPROTEIN SM; [PF01423] LSM domain44.400.7873
49 Mapoly0022s0038 [4.2.1.-] Hydro-lyases.; [K02372] 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-]; [PTHR30272] (3R)-HYDROXYMYRISTOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE; [PF07977] FabA-like domain45.460.7622
50 Mapoly0015s0017 [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [GO:0042254] ribosome biogenesis; [GO:0005622] intracellular; [PF00466] Ribosomal protein L10; [KOG0816] Protein involved in mRNA turnover46.280.7533
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