Guide Gene
- Gene ID
- Mapoly0091s0083
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [GO:0003723] RNA binding; [PTHR13452:SF6] TRNA ACETYLTRANSFERASE TAN1; [PTHR13452] THUMP DOMAIN CONTAINING PROTEIN 1-RELATED; [PF02926] THUMP domain; [K06963] ribosomal RNA assembly protein
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0091s0083 [GO:0003723] RNA binding; [PTHR13452:SF6] TRNA ACETYLTRANSFERASE TAN1; [PTHR13452] THUMP DOMAIN CONTAINING PROTEIN 1-RELATED; [PF02926] THUMP domain; [K06963] ribosomal RNA assembly protein 0.00 1.0000 1 Mapoly0014s0105 - 2.83 0.8370 2 Mapoly0083s0082 [PTHR15840] CGI-121 FAMILY MEMBER; [KOG4066] Cell growth regulatory protein CGR11; [PF08617] Kinase binding protein CGI-121 4.47 0.8312 3 Mapoly0056s0020 [PF04548] AIG1 family; [PTHR10903] GTPASE, IMAP FAMILY MEMBER-RELATED; [GO:0005525] GTP binding 6.71 0.7939 4 Mapoly0007s0156 [PTHR31745] FAMILY NOT NAMED; [PF08536] Whirly transcription factor 9.22 0.7808 5 Mapoly0140s0003 [GO:0015099] nickel cation transmembrane transporter activity; [GO:0016021] integral to membrane; [GO:0035444] nickel cation transmembrane transport; [PF03824] High-affinity nickel-transport protein; [GO:0046872] metal ion binding 10.39 0.6916 6 Mapoly0028s0114 [K14565] nucleolar protein 58; [PF01798] Putative snoRNA binding domain; [PF08060] NOSIC (NUC001) domain; [PTHR10894:SF1] NUCLEOLAR PROTEIN NOP56-RELATED; [PF08156] NOP5NT (NUC127) domain; [KOG2572] Ribosome biogenesis protein - Nop58p/Nop5p; [PTHR10894] NUCLEOLAR PROTEIN 5 (NUCLEOLAR PROTEIN NOP5)(NOP58) 11.66 0.7813 7 Mapoly0086s0024 [GO:0001522] pseudouridine synthesis; [GO:0031429] box H/ACA snoRNP complex; [GO:0042254] ribosome biogenesis; [K11128] H/ACA ribonucleoprotein complex subunit 1; [KOG3262] H/ACA small nucleolar RNP component GAR1; [PF04410] Gar1/Naf1 RNA binding region; [PTHR23237] NUCLEOLAR PROTEIN FAMILY A MEMBER 1 (SNORNP PROTEIN GAR1) 13.67 0.7620 8 Mapoly0051s0054 - 16.73 0.7682 9 Mapoly0037s0133 - 17.66 0.7317 10 Mapoly0036s0111 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [PTHR12029] RNA METHYLTRANSFERASE; [PF00588] SpoU rRNA Methylase family; [GO:0008173] RNA methyltransferase activity; [KOG2506] SpoU rRNA Methylase family protein 17.75 0.7066 11 Mapoly0026s0057 [PTHR23417] 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE; [PF02390] Putative methyltransferase; [GO:0008176] tRNA (guanine-N7-)-methyltransferase activity; [K03439] tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]; [2.1.1.33] tRNA (guanine(46)-N(7))-methyltransferase.; [KOG3115] Methyltransferase-like protein; [GO:0006400] tRNA modification 18.49 0.7467 12 Mapoly0012s0036 [PF01926] 50S ribosome-binding GTPase; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [GO:0005525] GTP binding 18.73 0.7130 13 Mapoly0005s0125 [PF05383] La domain; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [PF08777] RNA binding motif; [K11090] lupus La protein; [KOG4213] RNA-binding protein La; [PTHR22792] LUPUS LA PROTEIN-RELATED 18.97 0.7664 14 Mapoly0179s0014 [PTHR11586:SF1] SUBFAMILY NOT NAMED; [KOG2241] tRNA-binding protein; [PF01588] Putative tRNA binding domain; [GO:0000049] tRNA binding; [PTHR11586] FAMILY NOT NAMED 19.24 0.7643 15 Mapoly0006s0190 [GO:0005840] ribosome; [GO:0003735] structural constituent of ribosome; [KOG3436] 60S ribosomal protein L35; [PTHR13872] 60S RIBOSOMAL PROTEIN L35; [GO:0005622] intracellular; [PF00831] Ribosomal L29 protein; [GO:0006412] translation; [K02918] large subunit ribosomal protein L35e 19.29 0.7769 16 Mapoly0109s0034 [K03246] translation initiation factor eIF-3 subunit 2; [GO:0005515] protein binding; [PTHR19877] WD40 REPEAT PROTEIN; [KOG0643] Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1); [PF00400] WD domain, G-beta repeat 19.42 0.7600 17 Mapoly0014s0176 - 21.42 0.7280 18 Mapoly0139s0003 [PF11523] Protein of unknown function (DUF3223) 22.18 0.7612 19 Mapoly0133s0052 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [K08851] TP53 regulating kinase [EC:2.7.11.1]; [PTHR12209] O-SIALOGLYCOPROTEIN ENDOPEPTIDASE; [GO:0006468] protein phosphorylation; [KOG3087] Serine/threonine protein kinase; [GO:0004674] protein serine/threonine kinase activity 23.66 0.7715 20 Mapoly0051s0110 [KOG2855] Ribokinase; [PF00294] pfkB family carbohydrate kinase; [PTHR10584] SUGAR KINASE 26.08 0.6752 21 Mapoly0007s0280 [GO:0005737] cytoplasm; [KOG3677] RNA polymerase I-associated factor - PAF67; [GO:0003743] translation initiation factor activity; [GO:0005852] eukaryotic translation initiation factor 3 complex; [PF10255] RNA polymerase I-associated factor PAF67; [PTHR13242] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 26.27 0.7039 22 Mapoly0003s0247 [K12845] U4/U6 small nuclear ribonucleoprotein SNU13; [KOG3387] 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing; [PTHR23105] RIBOSOMAL PROTEIN L7AE FAMILY MEMBER; [PF01248] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27.24 0.7597 23 Mapoly0084s0048 [PTHR10516] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [KOG0552] FKBP-type peptidyl-prolyl cis-trans isomerase; [GO:0006457] protein folding; [K01802] peptidylprolyl isomerase [EC:5.2.1.8]; [PF00254] FKBP-type peptidyl-prolyl cis-trans isomerase; [5.2.1.8] Peptidylprolyl isomerase.; [PF03066] Nucleoplasmin 27.87 0.7420 24 Mapoly0001s0201 [GO:0005840] ribosome; [KOG3449] 60S acidic ribosomal protein P2; [GO:0006414] translational elongation; [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [GO:0003735] structural constituent of ribosome; [K02943] large subunit ribosomal protein LP2; [GO:0005622] intracellular; [PF00428] 60s Acidic ribosomal protein 29.12 0.7561 25 Mapoly0132s0028 [GO:0006260] DNA replication; [PTHR10302] SINGLE-STRANDED DNA-BINDING PROTEIN; [GO:0003697] single-stranded DNA binding; [KOG1653] Single-stranded DNA-binding protein; [PF00436] Single-strand binding protein family; [K03111] single-strand DNA-binding protein 31.18 0.7515 26 Mapoly0048s0048 [PTHR31802] FAMILY NOT NAMED 33.32 0.7589 27 Mapoly0097s0065 [PTHR15350:SF2] COP9 SIGNALOSOME COMPLEX SUBUNIT 7; [GO:0005515] protein binding; [PF01399] PCI domain; [PTHR15350] COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17; [KOG2753] Uncharacterized conserved protein, contains PCI domain 34.00 0.7517 28 Mapoly0026s0084 [GO:0003723] RNA binding; [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [KOG1596] Fibrillarin and related nucleolar RNA-binding proteins; [PF01269] Fibrillarin; [GO:0006364] rRNA processing; [GO:0008033] tRNA processing; [K14563] rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]; [PTHR10335] RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 34.64 0.7426 29 Mapoly0036s0058 [GO:0008652] cellular amino acid biosynthetic process; [KOG4354] N-acetyl-gamma-glutamyl-phosphate reductase; [PF01118] Semialdehyde dehydrogenase, NAD binding domain; [GO:0005737] cytoplasm; [GO:0055114] oxidation-reduction process; [GO:0046983] protein dimerization activity; [PF02774] Semialdehyde dehydrogenase, dimerisation domain; [1.2.1.-] With NAD(+) or NADP(+) as acceptor.; [GO:0016620] oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; [PTHR32338] FAMILY NOT NAMED; [K00145] N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-aminoadipyl-phosphate reductase [EC:1.2.1.38 1.2.1.-]; [GO:0051287] NAD binding; [GO:0003942] N-acetyl-gamma-glutamyl-phosphate reductase activity; [1.2.1.38] N-acetyl-gamma-glutamyl-phosphate reductase. 35.41 0.7141 30 Mapoly0028s0045 - 35.92 0.7099 31 Mapoly0151s0030 [PF00557] Metallopeptidase family M24; [PTHR10804:SF11] PROLIFERATION-ASSOCIATED PROTEIN 2G4; [PTHR10804] PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P); [KOG2776] Metallopeptidase 41.16 0.7409 32 Mapoly0008s0078 [PF03966] Trm112p-like protein; [PTHR12773] UPF0315 PROTEIN-RELATED 42.71 0.7202 33 Mapoly0022s0159 - 43.30 0.6416 34 Mapoly0022s0038 [4.2.1.-] Hydro-lyases.; [K02372] 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-]; [PTHR30272] (3R)-HYDROXYMYRISTOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE; [PF07977] FabA-like domain 43.54 0.7332 35 Mapoly0015s0017 [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [GO:0042254] ribosome biogenesis; [GO:0005622] intracellular; [PF00466] Ribosomal protein L10; [KOG0816] Protein involved in mRNA turnover 44.59 0.7263 36 Mapoly0054s0063 [PTHR24012] FAMILY NOT NAMED; [KOG0107] Alternative splicing factor SRp20/9G8 (RRM superfamily); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45.44 0.6841 37 Mapoly0012s0108 [K03123] transcription initiation factor TFIIA small subunit; [PF02751] Transcription initiation factor IIA, gamma subunit; [PTHR10966] TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2; [KOG3463] Transcription initiation factor IIA, gamma subunit; [GO:0005672] transcription factor TFIIA complex; [GO:0006367] transcription initiation from RNA polymerase II promoter; [PF02268] Transcription initiation factor IIA, gamma subunit, helical domain 49.14 0.7173 38 Mapoly0145s0029 - 51.03 0.7205 39 Mapoly0109s0052 [4.1.2.25] Dihydroneopterin aldolase.; [PTHR20941] FOLATE SYNTHESIS PROTEINS; [PF02152] Dihydroneopterin aldolase; [K01633] dihydroneopterin aldolase [EC:4.1.2.25]; [GO:0004150] dihydroneopterin aldolase activity; [GO:0006760] folic acid-containing compound metabolic process 51.81 0.6433 40 Mapoly0092s0049 [PTHR10501] U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B; [K11094] U2 small nuclear ribonucleoprotein B''; [GO:0000398] mRNA splicing, via spliceosome; [KOG4206] Spliceosomal protein snRNP-U1A/U2B; [GO:0003676] nucleic acid binding; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [GO:0017069] snRNA binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52.97 0.7401 41 Mapoly0005s0203 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PF00313] 'Cold-shock' DNA-binding domain; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [PTHR11544] COLD SHOCK DOMAIN CONTAINING PROTEINS; [K09250] cellular nucleic acid-binding protein; [GO:0003676] nucleic acid binding; [KOG3070] Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing 56.12 0.7320 42 Mapoly0001s0474 [PTHR24012] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [K11294] nucleolin; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [KOG0148] Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) 56.20 0.6705 43 Mapoly0162s0019 [GO:0005840] ribosome; [KOG1624] Mitochondrial/chloroplast ribosomal protein L4; [GO:0003735] structural constituent of ribosome; [K02926] large subunit ribosomal protein L4; [PF00573] Ribosomal protein L4/L1 family; [PTHR10746] 50S RIBOSOMAL PROTEIN L4; [GO:0006412] translation 57.83 0.7069 44 Mapoly0001s0053 - 59.87 0.6806 45 Mapoly0068s0043 [PF05899] Protein of unknown function (DUF861) 66.11 0.7026 46 Mapoly0010s0212 [KOG3467] Histone H4; [GO:0003677] DNA binding; [PTHR10484] HISTONE H4; [K11254] histone H4; [PF00125] Core histone H2A/H2B/H3/H4 66.23 0.7183 47 Mapoly0003s0042 [GO:0016597] amino acid binding; [PF02729] Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; [2.1.3.3] Ornithine carbamoyltransferase.; [GO:0016743] carboxyl- or carbamoyltransferase activity; [K00611] ornithine carbamoyltransferase [EC:2.1.3.3]; [GO:0006520] cellular amino acid metabolic process; [PTHR11405] CARBAMOYLTRANSFERASE RELATED; [KOG1504] Ornithine carbamoyltransferase OTC/ARG3; [PF00185] Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 68.38 0.6237 48 Mapoly0014s0080 [PF03587] EMG1/NEP1 methyltransferase; [GO:0008168] methyltransferase activity; [PTHR12636:SF5] SUBFAMILY NOT NAMED; [KOG3073] Protein required for 18S rRNA maturation and 40S ribosome biogenesis; [K14568] essential for mitotic growth 1; [PTHR12636] NEP1/MRA1 69.54 0.6827 49 Mapoly0013s0016 [GO:0003677] DNA binding; [GO:0006260] DNA replication; [PTHR31614] FAMILY NOT NAMED; [GO:0005634] nucleus; [GO:0006281] DNA repair; [PF08661] Replication factor A protein 3; [GO:0006310] DNA recombination 70.36 0.7200 50 Mapoly0013s0057 [PTHR23105] RIBOSOMAL PROTEIN L7AE FAMILY MEMBER; [KOG3167] Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation; [PF01248] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; [K11129] H/ACA ribonucleoprotein complex subunit 2; [PTHR23105:SF12] NUCLEOLAR PROTEIN FAMILY A MEMBER 2 70.40 0.7100